HEADER TRANSFERASE 05-FEB-10 3LPM TITLE CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE SMALL DOMAIN PROTEIN TITLE 2 FROM LISTERIA MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 8-257; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 634178; SOURCE 4 STRAIN: CLIP81459, CLIP80459; SOURCE 5 GENE: CAC98380.1, LM4B_00166; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 2 STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, METHYLTRANSFERASE, KEYWDS 3 TRANSFERASE, PSI-2, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 10-FEB-21 3LPM 1 AUTHOR JRNL SEQADV LINK REVDAT 4 21-NOV-18 3LPM 1 AUTHOR REVDAT 3 01-NOV-17 3LPM 1 REMARK REVDAT 2 13-JUL-11 3LPM 1 VERSN REVDAT 1 23-FEB-10 3LPM 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE SMALL DOMAIN JRNL TITL 2 PROTEIN FROM LISTERIA MONOCYTOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 30634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1543 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3603 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4866 ; 1.399 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 6.943 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;37.552 ;23.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 705 ;19.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;23.478 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 573 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2606 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2221 ; 0.951 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3628 ; 4.574 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1382 ;11.234 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1237 ; 0.846 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 249 REMARK 3 RESIDUE RANGE : A 260 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 55.3270 27.6165 90.4094 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.0493 REMARK 3 T33: 0.1497 T12: -0.0228 REMARK 3 T13: -0.0194 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.0344 L22: 1.8189 REMARK 3 L33: 3.6721 L12: -0.4199 REMARK 3 L13: 0.3145 L23: 0.3530 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: -0.0710 S13: -0.0340 REMARK 3 S21: -0.1150 S22: 0.0083 S23: 0.3092 REMARK 3 S31: 0.0557 S32: -0.1834 S33: 0.0574 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 249 REMARK 3 RESIDUE RANGE : B 260 B 322 REMARK 3 ORIGIN FOR THE GROUP (A): 51.3153 23.7127 51.0902 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0292 REMARK 3 T33: 0.1583 T12: 0.0102 REMARK 3 T13: -0.0587 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.2705 L22: 1.5491 REMARK 3 L33: 3.5087 L12: 0.5121 REMARK 3 L13: 0.2422 L23: -0.2678 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.0794 S13: -0.0589 REMARK 3 S21: 0.2005 S22: -0.0120 S23: -0.2705 REMARK 3 S31: 0.1252 S32: 0.2041 S33: 0.0441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3LPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000,0.1 M CHESS, 0.2 M NACL, REMARK 280 PH 9.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.62500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.70450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.13850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.70450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.62500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.13850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 TYR A 129 REMARK 465 PHE A 130 REMARK 465 ALA A 131 REMARK 465 THR A 132 REMARK 465 PRO A 133 REMARK 465 ASP A 134 REMARK 465 THR A 135 REMARK 465 SER A 136 REMARK 465 LEU A 137 REMARK 465 LYS A 138 REMARK 465 ASN A 139 REMARK 465 THR A 140 REMARK 465 ASN A 141 REMARK 465 GLU A 142 REMARK 465 HIS A 143 REMARK 465 PHE A 144 REMARK 465 ARG A 145 REMARK 465 ILE A 146 REMARK 465 ALA A 147 REMARK 465 ARG A 148 REMARK 465 HIS A 149 REMARK 465 GLU A 150 REMARK 465 VAL A 151 REMARK 465 GLU A 250 REMARK 465 SER A 251 REMARK 465 GLU A 252 REMARK 465 GLY A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 GLU B 4 REMARK 465 TYR B 129 REMARK 465 PHE B 130 REMARK 465 ALA B 131 REMARK 465 THR B 132 REMARK 465 PRO B 133 REMARK 465 ASP B 134 REMARK 465 THR B 135 REMARK 465 SER B 136 REMARK 465 LEU B 137 REMARK 465 LYS B 138 REMARK 465 ASN B 139 REMARK 465 THR B 140 REMARK 465 ASN B 141 REMARK 465 GLU B 142 REMARK 465 HIS B 143 REMARK 465 PHE B 144 REMARK 465 ARG B 145 REMARK 465 ILE B 146 REMARK 465 ALA B 147 REMARK 465 ARG B 148 REMARK 465 HIS B 149 REMARK 465 GLU B 150 REMARK 465 VAL B 151 REMARK 465 GLU B 250 REMARK 465 SER B 251 REMARK 465 GLU B 252 REMARK 465 GLY B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 146.42 -24.19 REMARK 500 LYS A 50 -152.26 69.67 REMARK 500 THR A 112 0.54 -69.23 REMARK 500 LYS B 50 -157.17 74.64 REMARK 500 ARG B 192 22.21 84.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13835A RELATED DB: TARGETDB DBREF 3LPM A 3 252 UNP C1KXY4 C1KXY4_LISMC 8 257 DBREF 3LPM B 3 252 UNP C1KXY4 C1KXY4_LISMC 8 257 SEQADV 3LPM MSE A 1 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM SER A 2 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM LYS A 7 UNP C1KXY4 GLU 12 CONFLICT SEQADV 3LPM GLY A 253 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS A 254 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS A 255 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS A 256 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS A 257 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS A 258 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS A 259 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM MSE B 1 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM SER B 2 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM LYS B 7 UNP C1KXY4 GLU 12 CONFLICT SEQADV 3LPM GLY B 253 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS B 254 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS B 255 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS B 256 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS B 257 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS B 258 UNP C1KXY4 EXPRESSION TAG SEQADV 3LPM HIS B 259 UNP C1KXY4 EXPRESSION TAG SEQRES 1 A 259 MSE SER LEU GLU LYS LEU LYS LEU ILE GLY ASP GLU ARG SEQRES 2 A 259 LEU ASP TYR LEU LEU ALA GLU ASN LEU ARG ILE ILE GLN SEQRES 3 A 259 SER PRO SER VAL PHE SER PHE SER ILE ASP ALA VAL LEU SEQRES 4 A 259 LEU ALA LYS PHE SER TYR LEU PRO ILE ARG LYS GLY LYS SEQRES 5 A 259 ILE ILE ASP LEU CYS SER GLY ASN GLY ILE ILE PRO LEU SEQRES 6 A 259 LEU LEU SER THR ARG THR LYS ALA LYS ILE VAL GLY VAL SEQRES 7 A 259 GLU ILE GLN GLU ARG LEU ALA ASP MSE ALA LYS ARG SER SEQRES 8 A 259 VAL ALA TYR ASN GLN LEU GLU ASP GLN ILE GLU ILE ILE SEQRES 9 A 259 GLU TYR ASP LEU LYS LYS ILE THR ASP LEU ILE PRO LYS SEQRES 10 A 259 GLU ARG ALA ASP ILE VAL THR CYS ASN PRO PRO TYR PHE SEQRES 11 A 259 ALA THR PRO ASP THR SER LEU LYS ASN THR ASN GLU HIS SEQRES 12 A 259 PHE ARG ILE ALA ARG HIS GLU VAL MSE CYS THR LEU GLU SEQRES 13 A 259 ASP THR ILE ARG VAL ALA ALA SER LEU LEU LYS GLN GLY SEQRES 14 A 259 GLY LYS ALA ASN PHE VAL HIS ARG PRO GLU ARG LEU LEU SEQRES 15 A 259 ASP ILE ILE ASP ILE MSE ARG LYS TYR ARG LEU GLU PRO SEQRES 16 A 259 LYS ARG ILE GLN PHE VAL HIS PRO ARG SER ASP ARG GLU SEQRES 17 A 259 ALA ASN THR VAL LEU VAL GLU GLY ILE LYS ASP GLY LYS SEQRES 18 A 259 PRO GLY VAL LYS TYR VAL PRO PRO VAL ILE VAL TYR ASP SEQRES 19 A 259 GLU LEU GLY GLU TYR THR PRO VAL ILE LYS GLU ILE LEU SEQRES 20 A 259 TYR GLY GLU SER GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 259 MSE SER LEU GLU LYS LEU LYS LEU ILE GLY ASP GLU ARG SEQRES 2 B 259 LEU ASP TYR LEU LEU ALA GLU ASN LEU ARG ILE ILE GLN SEQRES 3 B 259 SER PRO SER VAL PHE SER PHE SER ILE ASP ALA VAL LEU SEQRES 4 B 259 LEU ALA LYS PHE SER TYR LEU PRO ILE ARG LYS GLY LYS SEQRES 5 B 259 ILE ILE ASP LEU CYS SER GLY ASN GLY ILE ILE PRO LEU SEQRES 6 B 259 LEU LEU SER THR ARG THR LYS ALA LYS ILE VAL GLY VAL SEQRES 7 B 259 GLU ILE GLN GLU ARG LEU ALA ASP MSE ALA LYS ARG SER SEQRES 8 B 259 VAL ALA TYR ASN GLN LEU GLU ASP GLN ILE GLU ILE ILE SEQRES 9 B 259 GLU TYR ASP LEU LYS LYS ILE THR ASP LEU ILE PRO LYS SEQRES 10 B 259 GLU ARG ALA ASP ILE VAL THR CYS ASN PRO PRO TYR PHE SEQRES 11 B 259 ALA THR PRO ASP THR SER LEU LYS ASN THR ASN GLU HIS SEQRES 12 B 259 PHE ARG ILE ALA ARG HIS GLU VAL MSE CYS THR LEU GLU SEQRES 13 B 259 ASP THR ILE ARG VAL ALA ALA SER LEU LEU LYS GLN GLY SEQRES 14 B 259 GLY LYS ALA ASN PHE VAL HIS ARG PRO GLU ARG LEU LEU SEQRES 15 B 259 ASP ILE ILE ASP ILE MSE ARG LYS TYR ARG LEU GLU PRO SEQRES 16 B 259 LYS ARG ILE GLN PHE VAL HIS PRO ARG SER ASP ARG GLU SEQRES 17 B 259 ALA ASN THR VAL LEU VAL GLU GLY ILE LYS ASP GLY LYS SEQRES 18 B 259 PRO GLY VAL LYS TYR VAL PRO PRO VAL ILE VAL TYR ASP SEQRES 19 B 259 GLU LEU GLY GLU TYR THR PRO VAL ILE LYS GLU ILE LEU SEQRES 20 B 259 TYR GLY GLU SER GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3LPM MSE A 87 MET SELENOMETHIONINE MODRES 3LPM MSE A 152 MET SELENOMETHIONINE MODRES 3LPM MSE A 188 MET SELENOMETHIONINE MODRES 3LPM MSE B 87 MET SELENOMETHIONINE MODRES 3LPM MSE B 152 MET SELENOMETHIONINE MODRES 3LPM MSE B 188 MET SELENOMETHIONINE HET MSE A 87 8 HET MSE A 152 8 HET MSE A 188 8 HET MSE B 87 8 HET MSE B 152 8 HET MSE B 188 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HOH *128(H2 O) HELIX 1 1 SER A 34 SER A 44 1 11 HELIX 2 2 GLY A 61 THR A 69 1 9 HELIX 3 3 GLN A 81 ASN A 95 1 15 HELIX 4 4 ASP A 107 LEU A 114 5 8 HELIX 5 5 MSE A 152 LEU A 165 1 14 HELIX 6 6 ARG A 180 TYR A 191 1 12 HELIX 7 7 THR A 240 GLY A 249 1 10 HELIX 8 8 SER B 34 SER B 44 1 11 HELIX 9 9 GLY B 61 THR B 69 1 9 HELIX 10 10 GLN B 81 GLN B 96 1 16 HELIX 11 11 ASP B 107 LEU B 114 5 8 HELIX 12 12 CYS B 153 LEU B 165 1 13 HELIX 13 13 ARG B 177 GLU B 179 5 3 HELIX 14 14 ARG B 180 TYR B 191 1 12 HELIX 15 15 THR B 240 GLY B 249 1 10 SHEET 1 A 2 ARG A 13 LEU A 17 0 SHEET 2 A 2 LEU A 22 GLN A 26 -1 O GLN A 26 N ARG A 13 SHEET 1 B 8 ILE A 101 ILE A 104 0 SHEET 2 B 8 LYS A 74 VAL A 78 1 N GLY A 77 O GLU A 102 SHEET 3 B 8 LYS A 52 ASP A 55 1 N ILE A 53 O LYS A 74 SHEET 4 B 8 ALA A 120 CYS A 125 1 O ILE A 122 N ILE A 54 SHEET 5 B 8 LEU A 166 HIS A 176 1 O LYS A 171 N VAL A 123 SHEET 6 B 8 THR A 211 LYS A 218 -1 O LYS A 218 N GLY A 170 SHEET 7 B 8 LEU A 193 HIS A 202 -1 N GLN A 199 O LEU A 213 SHEET 8 B 8 LYS A 225 ILE A 231 1 O VAL A 230 N HIS A 202 SHEET 1 C 2 ARG B 13 LEU B 17 0 SHEET 2 C 2 LEU B 22 GLN B 26 -1 O LEU B 22 N LEU B 17 SHEET 1 D 8 ILE B 101 ILE B 104 0 SHEET 2 D 8 LYS B 74 VAL B 78 1 N ILE B 75 O GLU B 102 SHEET 3 D 8 LYS B 52 ASP B 55 1 N ASP B 55 O VAL B 78 SHEET 4 D 8 ALA B 120 CYS B 125 1 O ILE B 122 N ILE B 54 SHEET 5 D 8 LEU B 166 HIS B 176 1 O ASN B 173 N VAL B 123 SHEET 6 D 8 THR B 211 LYS B 218 -1 O LYS B 218 N GLY B 170 SHEET 7 D 8 LEU B 193 HIS B 202 -1 N GLN B 199 O LEU B 213 SHEET 8 D 8 LYS B 225 TYR B 226 1 O LYS B 225 N LYS B 196 SHEET 1 E 8 ILE B 101 ILE B 104 0 SHEET 2 E 8 LYS B 74 VAL B 78 1 N ILE B 75 O GLU B 102 SHEET 3 E 8 LYS B 52 ASP B 55 1 N ASP B 55 O VAL B 78 SHEET 4 E 8 ALA B 120 CYS B 125 1 O ILE B 122 N ILE B 54 SHEET 5 E 8 LEU B 166 HIS B 176 1 O ASN B 173 N VAL B 123 SHEET 6 E 8 THR B 211 LYS B 218 -1 O LYS B 218 N GLY B 170 SHEET 7 E 8 LEU B 193 HIS B 202 -1 N GLN B 199 O LEU B 213 SHEET 8 E 8 VAL B 230 ILE B 231 1 O VAL B 230 N HIS B 202 LINK C ASP A 86 N MSE A 87 1555 1555 1.31 LINK C MSE A 87 N ALA A 88 1555 1555 1.31 LINK C MSE A 152 N CYS A 153 1555 1555 1.34 LINK C ILE A 187 N MSE A 188 1555 1555 1.32 LINK C MSE A 188 N ARG A 189 1555 1555 1.31 LINK C ASP B 86 N MSE B 87 1555 1555 1.31 LINK C MSE B 87 N ALA B 88 1555 1555 1.31 LINK C MSE B 152 N CYS B 153 1555 1555 1.34 LINK C ILE B 187 N MSE B 188 1555 1555 1.31 LINK C MSE B 188 N ARG B 189 1555 1555 1.32 CRYST1 71.250 76.277 143.409 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014035 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006973 0.00000