data_3LPU # _entry.id 3LPU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LPU pdb_00003lpu 10.2210/pdb3lpu/pdb RCSB RCSB057579 ? ? WWPDB D_1000057579 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HYV 'HIV integrase core domain bound to tetraphenylarsenium' unspecified PDB 3LPT . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LPU _pdbx_database_status.recvd_initial_deposition_date 2010-02-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nicolet, S.' 1 'Christ, F.' 2 'Voet, A.' 3 'Marchand, A.' 4 'Strelkov, S.V.' 5 'de Maeyer, M.' 6 'Chaltin, P.' 7 'Debyzer, Z.' 8 # _citation.id primary _citation.title 'Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 6 _citation.page_first 442 _citation.page_last 448 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20473303 _citation.pdbx_database_id_DOI 10.1038/nchembio.370 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Christ, F.' 1 ? primary 'Voet, A.' 2 ? primary 'Marchand, A.' 3 ? primary 'Nicolet, S.' 4 ? primary 'Desimmie, B.A.' 5 ? primary 'Marchand, D.' 6 ? primary 'Bardiot, D.' 7 ? primary 'Van der Veken, N.J.' 8 ? primary 'Van Remoortel, B.' 9 ? primary 'Strelkov, S.V.' 10 ? primary 'De Maeyer, M.' 11 ? primary 'Chaltin, P.' 12 ? primary 'Debyser, Z.' 13 ? # _cell.entry_id 3LPU _cell.length_a 72.050 _cell.length_b 72.050 _cell.length_c 66.350 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LPU _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Integrase 18434.723 1 ? F185K 'HIV integrase core domain' ? 2 non-polymer syn '(2S)-2-(6-chloro-2-methyl-4-phenylquinolin-3-yl)pentanoic acid' 353.842 1 ? ? ? ? 3 non-polymer syn '2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanol' 222.279 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 6 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 7 water nat water 18.015 125 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSHMHGQVDCSPGIWQLD(CAF)THLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFT STTVKAA(CAF)WWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGE RIVDIIATDIQTKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT DIQTKE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 HIS n 1 6 GLY n 1 7 GLN n 1 8 VAL n 1 9 ASP n 1 10 CYS n 1 11 SER n 1 12 PRO n 1 13 GLY n 1 14 ILE n 1 15 TRP n 1 16 GLN n 1 17 LEU n 1 18 ASP n 1 19 CAF n 1 20 THR n 1 21 HIS n 1 22 LEU n 1 23 GLU n 1 24 GLY n 1 25 LYS n 1 26 VAL n 1 27 ILE n 1 28 LEU n 1 29 VAL n 1 30 ALA n 1 31 VAL n 1 32 HIS n 1 33 VAL n 1 34 ALA n 1 35 SER n 1 36 GLY n 1 37 TYR n 1 38 ILE n 1 39 GLU n 1 40 ALA n 1 41 GLU n 1 42 VAL n 1 43 ILE n 1 44 PRO n 1 45 ALA n 1 46 GLU n 1 47 THR n 1 48 GLY n 1 49 GLN n 1 50 GLU n 1 51 THR n 1 52 ALA n 1 53 TYR n 1 54 PHE n 1 55 LEU n 1 56 LEU n 1 57 LYS n 1 58 LEU n 1 59 ALA n 1 60 GLY n 1 61 ARG n 1 62 TRP n 1 63 PRO n 1 64 VAL n 1 65 LYS n 1 66 THR n 1 67 VAL n 1 68 HIS n 1 69 THR n 1 70 ASP n 1 71 ASN n 1 72 GLY n 1 73 SER n 1 74 ASN n 1 75 PHE n 1 76 THR n 1 77 SER n 1 78 THR n 1 79 THR n 1 80 VAL n 1 81 LYS n 1 82 ALA n 1 83 ALA n 1 84 CAF n 1 85 TRP n 1 86 TRP n 1 87 ALA n 1 88 GLY n 1 89 ILE n 1 90 LYS n 1 91 GLN n 1 92 GLU n 1 93 PHE n 1 94 GLY n 1 95 ILE n 1 96 PRO n 1 97 TYR n 1 98 ASN n 1 99 PRO n 1 100 GLN n 1 101 SER n 1 102 GLN n 1 103 GLY n 1 104 VAL n 1 105 ILE n 1 106 GLU n 1 107 SER n 1 108 MET n 1 109 ASN n 1 110 LYS n 1 111 GLU n 1 112 LEU n 1 113 LYS n 1 114 LYS n 1 115 ILE n 1 116 ILE n 1 117 GLY n 1 118 GLN n 1 119 VAL n 1 120 ARG n 1 121 ASP n 1 122 GLN n 1 123 ALA n 1 124 GLU n 1 125 HIS n 1 126 LEU n 1 127 LYS n 1 128 THR n 1 129 ALA n 1 130 VAL n 1 131 GLN n 1 132 MET n 1 133 ALA n 1 134 VAL n 1 135 PHE n 1 136 ILE n 1 137 HIS n 1 138 ASN n 1 139 LYS n 1 140 LYS n 1 141 ARG n 1 142 LYS n 1 143 GLY n 1 144 GLY n 1 145 ILE n 1 146 GLY n 1 147 GLY n 1 148 TYR n 1 149 SER n 1 150 ALA n 1 151 GLY n 1 152 GLU n 1 153 ARG n 1 154 ILE n 1 155 VAL n 1 156 ASP n 1 157 ILE n 1 158 ILE n 1 159 ALA n 1 160 THR n 1 161 ASP n 1 162 ILE n 1 163 GLN n 1 164 THR n 1 165 LYS n 1 166 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q76353_9HIV1 _struct_ref.pdbx_db_accession Q76353 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIAT DIQTKE ; _struct_ref.pdbx_align_begin 47 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LPU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q76353 _struct_ref_seq.db_align_beg 50 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 50 _struct_ref_seq.pdbx_auth_seq_align_end 212 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LPU GLY A 1 ? UNP Q76353 ? ? 'expression tag' 47 1 1 3LPU SER A 2 ? UNP Q76353 ? ? 'expression tag' 48 2 1 3LPU HIS A 3 ? UNP Q76353 ? ? 'expression tag' 49 3 1 3LPU LYS A 139 ? UNP Q76353 PHE 185 'engineered mutation' 185 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 976 non-polymer . '(2S)-2-(6-chloro-2-methyl-4-phenylquinolin-3-yl)pentanoic acid' ? 'C21 H20 Cl N O2' 353.842 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CAF 'L-peptide linking' n S-DIMETHYLARSINOYL-CYSTEINE 'CYSTEIN-S-YL CACODYLATE' 'C5 H12 As N O3 S' 241.140 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P03 non-polymer . '2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanol' ? 'C10 H22 O5' 222.279 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LPU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_percent_sol 54.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '10% (w/v) PEG 8000, 0.1M Na cacodylate pH 6.5, 0.1M (NH4)2SO4, 5mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-08-08 _diffrn_detector.details 'Dynamically bendable mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'LN2 cooled fixed-exit Si(111) monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3LPU _reflns.observed_criterion_sigma_I 1.8 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.17 _reflns.d_resolution_high 1.9 _reflns.number_obs 14135 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_netI_over_sigmaI 17.9 _reflns.B_iso_Wilson_estimate 30.9 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.0 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3LPU _refine.ls_number_reflns_obs 14135 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 1.9 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.20 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 99.95 _refine.ls_R_factor_obs 0.20425 _refine.ls_R_factor_all 0.20425 _refine.ls_R_factor_R_work 0.20340 _refine.ls_R_factor_R_free 0.22053 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 746 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 30.895 _refine.aniso_B[1][1] 0.70 _refine.aniso_B[2][2] 0.70 _refine.aniso_B[3][3] -1.05 _refine.aniso_B[1][2] 0.35 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct DIRECT _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.158 _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.088 _refine.overall_SU_B 3.037 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1129 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 70 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1324 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 31.20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 1235 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.184 1.993 ? 1665 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.691 5.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.062 24.490 ? 49 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.566 15.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.559 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.078 0.200 ? 180 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 884 'X-RAY DIFFRACTION' ? r_mcbond_it 0.734 1.500 ? 722 'X-RAY DIFFRACTION' ? r_mcangle_it 1.386 2.000 ? 1167 'X-RAY DIFFRACTION' ? r_scbond_it 1.674 3.000 ? 513 'X-RAY DIFFRACTION' ? r_scangle_it 2.821 4.500 ? 497 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.001 _refine_ls_shell.number_reflns_R_work 1035 _refine_ls_shell.R_factor_R_work 0.242 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.245 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LPU _struct.title 'HIV integrase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LPU _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'HIV, integrase, LEDGF/p75 small molecule, inhibitor, Endonuclease, Hydrolase, Nuclease, Transferase, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 47 ? TRP A 62 ? THR A 93 TRP A 108 1 ? 16 HELX_P HELX_P2 2 ASN A 71 ? THR A 76 ? ASN A 117 THR A 122 5 ? 6 HELX_P HELX_P3 3 SER A 77 ? GLY A 88 ? SER A 123 GLY A 134 1 ? 12 HELX_P HELX_P4 4 SER A 107 ? ARG A 120 ? SER A 153 ARG A 166 1 ? 14 HELX_P HELX_P5 5 ASP A 121 ? ALA A 123 ? ASP A 167 ALA A 169 5 ? 3 HELX_P HELX_P6 6 HIS A 125 ? LYS A 140 ? HIS A 171 LYS A 186 1 ? 16 HELX_P HELX_P7 7 SER A 149 ? GLN A 163 ? SER A 195 GLN A 209 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 18 C ? ? ? 1_555 A CAF 19 N ? ? A ASP 64 A CAF 65 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A CAF 19 C ? ? ? 1_555 A THR 20 N ? ? A CAF 65 A THR 66 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A ALA 83 C ? ? ? 1_555 A CAF 84 N ? ? A ALA 129 A CAF 130 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A CAF 84 C ? ? ? 1_555 A TRP 85 N ? ? A CAF 130 A TRP 131 1_555 ? ? ? ? ? ? ? 1.326 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 38 ? ILE A 43 ? ILE A 84 ILE A 89 A 2 LYS A 25 ? HIS A 32 ? LYS A 71 HIS A 78 A 3 ILE A 14 ? LEU A 22 ? ILE A 60 LEU A 68 A 4 THR A 66 ? HIS A 68 ? THR A 112 HIS A 114 A 5 LYS A 90 ? GLN A 91 ? LYS A 136 GLN A 137 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 39 ? O GLU A 85 N ALA A 30 ? N ALA A 76 A 2 3 O VAL A 29 ? O VAL A 75 N ASP A 18 ? N ASP A 64 A 3 4 N TRP A 15 ? N TRP A 61 O HIS A 68 ? O HIS A 114 A 4 5 N VAL A 67 ? N VAL A 113 O LYS A 90 ? O LYS A 136 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 976 1 ? 10 'BINDING SITE FOR RESIDUE 976 A 1' AC2 Software A P03 213 ? 8 'BINDING SITE FOR RESIDUE P03 A 213' AC3 Software A PEG 2 ? 4 'BINDING SITE FOR RESIDUE PEG A 2' AC4 Software A PEG 3 ? 3 'BINDING SITE FOR RESIDUE PEG A 3' AC5 Software A SO4 497 ? 3 'BINDING SITE FOR RESIDUE SO4 A 497' AC6 Software A SO4 498 ? 7 'BINDING SITE FOR RESIDUE SO4 A 498' AC7 Software A SO4 499 ? 7 'BINDING SITE FOR RESIDUE SO4 A 499' AC8 Software A CA 500 ? 3 'BINDING SITE FOR RESIDUE CA A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 THR A 78 ? THR A 124 . ? 1_555 ? 2 AC1 10 THR A 79 ? THR A 125 . ? 1_555 ? 3 AC1 10 ALA A 82 ? ALA A 128 . ? 1_555 ? 4 AC1 10 ALA A 83 ? ALA A 129 . ? 1_555 ? 5 AC1 10 ALA A 123 ? ALA A 169 . ? 4_555 ? 6 AC1 10 GLU A 124 ? GLU A 170 . ? 4_555 ? 7 AC1 10 HIS A 125 ? HIS A 171 . ? 4_555 ? 8 AC1 10 THR A 128 ? THR A 174 . ? 4_555 ? 9 AC1 10 MET A 132 ? MET A 178 . ? 4_555 ? 10 AC1 10 HOH J . ? HOH A 456 . ? 1_555 ? 11 AC2 8 GLN A 49 ? GLN A 95 . ? 1_555 ? 12 AC2 8 GLU A 50 ? GLU A 96 . ? 1_555 ? 13 AC2 8 TYR A 53 ? TYR A 99 . ? 1_555 ? 14 AC2 8 HIS A 125 ? HIS A 171 . ? 4_555 ? 15 AC2 8 LYS A 127 ? LYS A 173 . ? 4_555 ? 16 AC2 8 HOH J . ? HOH A 425 . ? 1_555 ? 17 AC2 8 HOH J . ? HOH A 427 . ? 1_555 ? 18 AC2 8 SO4 H . ? SO4 A 499 . ? 4_555 ? 19 AC3 4 TRP A 85 ? TRP A 131 . ? 1_555 ? 20 AC3 4 ILE A 95 ? ILE A 141 . ? 2_655 ? 21 AC3 4 TYR A 97 ? TYR A 143 . ? 2_655 ? 22 AC3 4 HOH J . ? HOH A 474 . ? 1_555 ? 23 AC4 3 VAL A 33 ? VAL A 79 . ? 1_555 ? 24 AC4 3 SER A 35 ? SER A 81 . ? 1_555 ? 25 AC4 3 MET A 108 ? MET A 154 . ? 1_555 ? 26 AC5 3 THR A 20 ? THR A 66 . ? 1_555 ? 27 AC5 3 HIS A 21 ? HIS A 67 . ? 1_555 ? 28 AC5 3 LYS A 113 ? LYS A 159 . ? 1_555 ? 29 AC6 7 GLY A 48 ? GLY A 94 . ? 1_555 ? 30 AC6 7 SER A 77 ? SER A 123 . ? 1_555 ? 31 AC6 7 THR A 78 ? THR A 124 . ? 1_555 ? 32 AC6 7 THR A 79 ? THR A 125 . ? 1_555 ? 33 AC6 7 LYS A 140 ? LYS A 186 . ? 5_664 ? 34 AC6 7 HOH J . ? HOH A 402 . ? 1_555 ? 35 AC6 7 HOH J . ? HOH A 429 . ? 1_555 ? 36 AC7 7 LYS A 25 ? LYS A 71 . ? 1_555 ? 37 AC7 7 HIS A 125 ? HIS A 171 . ? 1_555 ? 38 AC7 7 LEU A 126 ? LEU A 172 . ? 1_555 ? 39 AC7 7 P03 C . ? P03 A 213 . ? 4_555 ? 40 AC7 7 HOH J . ? HOH A 322 . ? 1_555 ? 41 AC7 7 HOH J . ? HOH A 412 . ? 1_555 ? 42 AC7 7 HOH J . ? HOH A 477 . ? 1_555 ? 43 AC8 3 THR A 78 ? THR A 124 . ? 1_555 ? 44 AC8 3 LYS A 114 ? LYS A 160 . ? 5_664 ? 45 AC8 3 GLN A 118 ? GLN A 164 . ? 5_664 ? # _database_PDB_matrix.entry_id 3LPU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LPU _atom_sites.fract_transf_matrix[1][1] 0.013879 _atom_sites.fract_transf_matrix[1][2] 0.008013 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016026 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015072 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C CA CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 47 ? ? ? A . n A 1 2 SER 2 48 ? ? ? A . n A 1 3 HIS 3 49 ? ? ? A . n A 1 4 MET 4 50 ? ? ? A . n A 1 5 HIS 5 51 ? ? ? A . n A 1 6 GLY 6 52 ? ? ? A . n A 1 7 GLN 7 53 ? ? ? A . n A 1 8 VAL 8 54 ? ? ? A . n A 1 9 ASP 9 55 55 ASP ASP A . n A 1 10 CYS 10 56 56 CYS CYS A . n A 1 11 SER 11 57 57 SER SER A . n A 1 12 PRO 12 58 58 PRO PRO A . n A 1 13 GLY 13 59 59 GLY GLY A . n A 1 14 ILE 14 60 60 ILE ILE A . n A 1 15 TRP 15 61 61 TRP TRP A . n A 1 16 GLN 16 62 62 GLN GLN A . n A 1 17 LEU 17 63 63 LEU LEU A . n A 1 18 ASP 18 64 64 ASP ASP A . n A 1 19 CAF 19 65 65 CAF CAF A . n A 1 20 THR 20 66 66 THR THR A . n A 1 21 HIS 21 67 67 HIS HIS A . n A 1 22 LEU 22 68 68 LEU LEU A . n A 1 23 GLU 23 69 69 GLU GLU A . n A 1 24 GLY 24 70 70 GLY GLY A . n A 1 25 LYS 25 71 71 LYS LYS A . n A 1 26 VAL 26 72 72 VAL VAL A . n A 1 27 ILE 27 73 73 ILE ILE A . n A 1 28 LEU 28 74 74 LEU LEU A . n A 1 29 VAL 29 75 75 VAL VAL A . n A 1 30 ALA 30 76 76 ALA ALA A . n A 1 31 VAL 31 77 77 VAL VAL A . n A 1 32 HIS 32 78 78 HIS HIS A . n A 1 33 VAL 33 79 79 VAL VAL A . n A 1 34 ALA 34 80 80 ALA ALA A . n A 1 35 SER 35 81 81 SER SER A . n A 1 36 GLY 36 82 82 GLY GLY A . n A 1 37 TYR 37 83 83 TYR TYR A . n A 1 38 ILE 38 84 84 ILE ILE A . n A 1 39 GLU 39 85 85 GLU GLU A . n A 1 40 ALA 40 86 86 ALA ALA A . n A 1 41 GLU 41 87 87 GLU GLU A . n A 1 42 VAL 42 88 88 VAL VAL A . n A 1 43 ILE 43 89 89 ILE ILE A . n A 1 44 PRO 44 90 90 PRO PRO A . n A 1 45 ALA 45 91 91 ALA ALA A . n A 1 46 GLU 46 92 92 GLU GLU A . n A 1 47 THR 47 93 93 THR THR A . n A 1 48 GLY 48 94 94 GLY GLY A . n A 1 49 GLN 49 95 95 GLN GLN A . n A 1 50 GLU 50 96 96 GLU GLU A . n A 1 51 THR 51 97 97 THR THR A . n A 1 52 ALA 52 98 98 ALA ALA A . n A 1 53 TYR 53 99 99 TYR TYR A . n A 1 54 PHE 54 100 100 PHE PHE A . n A 1 55 LEU 55 101 101 LEU LEU A . n A 1 56 LEU 56 102 102 LEU LEU A . n A 1 57 LYS 57 103 103 LYS LYS A . n A 1 58 LEU 58 104 104 LEU LEU A . n A 1 59 ALA 59 105 105 ALA ALA A . n A 1 60 GLY 60 106 106 GLY GLY A . n A 1 61 ARG 61 107 107 ARG ARG A . n A 1 62 TRP 62 108 108 TRP TRP A . n A 1 63 PRO 63 109 109 PRO PRO A . n A 1 64 VAL 64 110 110 VAL VAL A . n A 1 65 LYS 65 111 111 LYS LYS A . n A 1 66 THR 66 112 112 THR THR A . n A 1 67 VAL 67 113 113 VAL VAL A . n A 1 68 HIS 68 114 114 HIS HIS A . n A 1 69 THR 69 115 115 THR THR A . n A 1 70 ASP 70 116 116 ASP ASP A . n A 1 71 ASN 71 117 117 ASN ASN A . n A 1 72 GLY 72 118 118 GLY GLY A . n A 1 73 SER 73 119 119 SER SER A . n A 1 74 ASN 74 120 120 ASN ASN A . n A 1 75 PHE 75 121 121 PHE PHE A . n A 1 76 THR 76 122 122 THR THR A . n A 1 77 SER 77 123 123 SER SER A . n A 1 78 THR 78 124 124 THR THR A . n A 1 79 THR 79 125 125 THR THR A . n A 1 80 VAL 80 126 126 VAL VAL A . n A 1 81 LYS 81 127 127 LYS LYS A . n A 1 82 ALA 82 128 128 ALA ALA A . n A 1 83 ALA 83 129 129 ALA ALA A . n A 1 84 CAF 84 130 130 CAF CAF A . n A 1 85 TRP 85 131 131 TRP TRP A . n A 1 86 TRP 86 132 132 TRP TRP A . n A 1 87 ALA 87 133 133 ALA ALA A . n A 1 88 GLY 88 134 134 GLY GLY A . n A 1 89 ILE 89 135 135 ILE ILE A . n A 1 90 LYS 90 136 136 LYS LYS A . n A 1 91 GLN 91 137 137 GLN GLN A . n A 1 92 GLU 92 138 138 GLU GLU A . n A 1 93 PHE 93 139 139 PHE PHE A . n A 1 94 GLY 94 140 140 GLY GLY A . n A 1 95 ILE 95 141 141 ILE ILE A . n A 1 96 PRO 96 142 142 PRO PRO A . n A 1 97 TYR 97 143 143 TYR TYR A . n A 1 98 ASN 98 144 144 ASN ASN A . n A 1 99 PRO 99 145 145 PRO PRO A . n A 1 100 GLN 100 146 ? ? ? A . n A 1 101 SER 101 147 ? ? ? A . n A 1 102 GLN 102 148 ? ? ? A . n A 1 103 GLY 103 149 ? ? ? A . n A 1 104 VAL 104 150 ? ? ? A . n A 1 105 ILE 105 151 ? ? ? A . n A 1 106 GLU 106 152 ? ? ? A . n A 1 107 SER 107 153 153 SER SER A . n A 1 108 MET 108 154 154 MET MET A . n A 1 109 ASN 109 155 155 ASN ASN A . n A 1 110 LYS 110 156 156 LYS LYS A . n A 1 111 GLU 111 157 157 GLU GLU A . n A 1 112 LEU 112 158 158 LEU LEU A . n A 1 113 LYS 113 159 159 LYS LYS A . n A 1 114 LYS 114 160 160 LYS LYS A . n A 1 115 ILE 115 161 161 ILE ILE A . n A 1 116 ILE 116 162 162 ILE ILE A . n A 1 117 GLY 117 163 163 GLY GLY A . n A 1 118 GLN 118 164 164 GLN GLN A . n A 1 119 VAL 119 165 165 VAL VAL A . n A 1 120 ARG 120 166 166 ARG ARG A . n A 1 121 ASP 121 167 167 ASP ASP A . n A 1 122 GLN 122 168 168 GLN GLN A . n A 1 123 ALA 123 169 169 ALA ALA A . n A 1 124 GLU 124 170 170 GLU GLU A . n A 1 125 HIS 125 171 171 HIS HIS A . n A 1 126 LEU 126 172 172 LEU LEU A . n A 1 127 LYS 127 173 173 LYS LYS A . n A 1 128 THR 128 174 174 THR THR A . n A 1 129 ALA 129 175 175 ALA ALA A . n A 1 130 VAL 130 176 176 VAL VAL A . n A 1 131 GLN 131 177 177 GLN GLN A . n A 1 132 MET 132 178 178 MET MET A . n A 1 133 ALA 133 179 179 ALA ALA A . n A 1 134 VAL 134 180 180 VAL VAL A . n A 1 135 PHE 135 181 181 PHE PHE A . n A 1 136 ILE 136 182 182 ILE ILE A . n A 1 137 HIS 137 183 183 HIS HIS A . n A 1 138 ASN 138 184 184 ASN ASN A . n A 1 139 LYS 139 185 185 LYS LYS A . n A 1 140 LYS 140 186 186 LYS LYS A . n A 1 141 ARG 141 187 187 ARG ARG A . n A 1 142 LYS 142 188 188 LYS LYS A . n A 1 143 GLY 143 189 ? ? ? A . n A 1 144 GLY 144 190 ? ? ? A . n A 1 145 ILE 145 191 ? ? ? A . n A 1 146 GLY 146 192 ? ? ? A . n A 1 147 GLY 147 193 193 GLY GLY A . n A 1 148 TYR 148 194 194 TYR TYR A . n A 1 149 SER 149 195 195 SER SER A . n A 1 150 ALA 150 196 196 ALA ALA A . n A 1 151 GLY 151 197 197 GLY GLY A . n A 1 152 GLU 152 198 198 GLU GLU A . n A 1 153 ARG 153 199 199 ARG ARG A . n A 1 154 ILE 154 200 200 ILE ILE A . n A 1 155 VAL 155 201 201 VAL VAL A . n A 1 156 ASP 156 202 202 ASP ASP A . n A 1 157 ILE 157 203 203 ILE ILE A . n A 1 158 ILE 158 204 204 ILE ILE A . n A 1 159 ALA 159 205 205 ALA ALA A . n A 1 160 THR 160 206 206 THR THR A . n A 1 161 ASP 161 207 207 ASP ASP A . n A 1 162 ILE 162 208 208 ILE ILE A . n A 1 163 GLN 163 209 209 GLN GLN A . n A 1 164 THR 164 210 ? ? ? A . n A 1 165 LYS 165 211 ? ? ? A . n A 1 166 GLU 166 212 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 976 1 1 1 976 976 A . C 3 P03 1 213 1 P03 P03 A . D 4 PEG 1 2 2 PEG P01 A . E 4 PEG 1 3 3 PEG P01 A . F 5 SO4 1 497 497 SO4 SO4 A . G 5 SO4 1 498 498 SO4 SO4 A . H 5 SO4 1 499 499 SO4 SO4 A . I 6 CA 1 500 500 CA CA A . J 7 HOH 1 304 304 HOH HOH A . J 7 HOH 2 305 305 HOH HOH A . J 7 HOH 3 306 306 HOH HOH A . J 7 HOH 4 307 307 HOH HOH A . J 7 HOH 5 308 308 HOH HOH A . J 7 HOH 6 309 309 HOH HOH A . J 7 HOH 7 310 310 HOH HOH A . J 7 HOH 8 312 312 HOH HOH A . J 7 HOH 9 313 313 HOH HOH A . J 7 HOH 10 314 314 HOH HOH A . J 7 HOH 11 315 315 HOH HOH A . J 7 HOH 12 316 316 HOH HOH A . J 7 HOH 13 317 317 HOH HOH A . J 7 HOH 14 320 320 HOH HOH A . J 7 HOH 15 321 321 HOH HOH A . J 7 HOH 16 322 322 HOH HOH A . J 7 HOH 17 324 324 HOH HOH A . J 7 HOH 18 326 326 HOH HOH A . J 7 HOH 19 327 327 HOH HOH A . J 7 HOH 20 330 330 HOH HOH A . J 7 HOH 21 333 333 HOH HOH A . J 7 HOH 22 336 336 HOH HOH A . J 7 HOH 23 339 339 HOH HOH A . J 7 HOH 24 341 341 HOH HOH A . J 7 HOH 25 344 344 HOH HOH A . J 7 HOH 26 345 345 HOH HOH A . J 7 HOH 27 347 347 HOH HOH A . J 7 HOH 28 349 349 HOH HOH A . J 7 HOH 29 350 350 HOH HOH A . J 7 HOH 30 351 351 HOH HOH A . J 7 HOH 31 352 352 HOH HOH A . J 7 HOH 32 354 354 HOH HOH A . J 7 HOH 33 356 356 HOH HOH A . J 7 HOH 34 358 358 HOH HOH A . J 7 HOH 35 360 360 HOH HOH A . J 7 HOH 36 361 361 HOH HOH A . J 7 HOH 37 362 362 HOH HOH A . J 7 HOH 38 363 363 HOH HOH A . J 7 HOH 39 366 366 HOH HOH A . J 7 HOH 40 371 371 HOH HOH A . J 7 HOH 41 373 373 HOH HOH A . J 7 HOH 42 377 377 HOH HOH A . J 7 HOH 43 379 379 HOH HOH A . J 7 HOH 44 381 381 HOH HOH A . J 7 HOH 45 384 384 HOH HOH A . J 7 HOH 46 386 386 HOH HOH A . J 7 HOH 47 388 388 HOH HOH A . J 7 HOH 48 389 389 HOH HOH A . J 7 HOH 49 390 390 HOH HOH A . J 7 HOH 50 392 392 HOH HOH A . J 7 HOH 51 394 394 HOH HOH A . J 7 HOH 52 395 395 HOH HOH A . J 7 HOH 53 396 396 HOH HOH A . J 7 HOH 54 397 397 HOH HOH A . J 7 HOH 55 400 400 HOH HOH A . J 7 HOH 56 401 401 HOH HOH A . J 7 HOH 57 402 402 HOH HOH A . J 7 HOH 58 403 403 HOH HOH A . J 7 HOH 59 404 404 HOH HOH A . J 7 HOH 60 405 405 HOH HOH A . J 7 HOH 61 406 406 HOH HOH A . J 7 HOH 62 407 407 HOH HOH A . J 7 HOH 63 408 408 HOH HOH A . J 7 HOH 64 410 410 HOH HOH A . J 7 HOH 65 411 411 HOH HOH A . J 7 HOH 66 412 412 HOH HOH A . J 7 HOH 67 413 413 HOH HOH A . J 7 HOH 68 414 414 HOH HOH A . J 7 HOH 69 415 415 HOH HOH A . J 7 HOH 70 416 416 HOH HOH A . J 7 HOH 71 418 418 HOH HOH A . J 7 HOH 72 420 420 HOH HOH A . J 7 HOH 73 421 421 HOH HOH A . J 7 HOH 74 423 423 HOH HOH A . J 7 HOH 75 425 425 HOH HOH A . J 7 HOH 76 427 427 HOH HOH A . J 7 HOH 77 428 428 HOH HOH A . J 7 HOH 78 429 429 HOH HOH A . J 7 HOH 79 430 430 HOH HOH A . J 7 HOH 80 431 431 HOH HOH A . J 7 HOH 81 432 432 HOH HOH A . J 7 HOH 82 434 434 HOH HOH A . J 7 HOH 83 435 435 HOH HOH A . J 7 HOH 84 441 441 HOH HOH A . J 7 HOH 85 449 449 HOH HOH A . J 7 HOH 86 450 450 HOH HOH A . J 7 HOH 87 451 451 HOH HOH A . J 7 HOH 88 452 452 HOH HOH A . J 7 HOH 89 453 453 HOH HOH A . J 7 HOH 90 454 454 HOH HOH A . J 7 HOH 91 455 455 HOH HOH A . J 7 HOH 92 456 456 HOH HOH A . J 7 HOH 93 457 457 HOH HOH A . J 7 HOH 94 458 458 HOH HOH A . J 7 HOH 95 459 459 HOH HOH A . J 7 HOH 96 460 460 HOH HOH A . J 7 HOH 97 461 461 HOH HOH A . J 7 HOH 98 462 462 HOH HOH A . J 7 HOH 99 463 463 HOH HOH A . J 7 HOH 100 464 464 HOH HOH A . J 7 HOH 101 465 465 HOH HOH A . J 7 HOH 102 466 466 HOH HOH A . J 7 HOH 103 467 467 HOH HOH A . J 7 HOH 104 468 468 HOH HOH A . J 7 HOH 105 470 470 HOH HOH A . J 7 HOH 106 471 471 HOH HOH A . J 7 HOH 107 472 472 HOH HOH A . J 7 HOH 108 473 473 HOH HOH A . J 7 HOH 109 474 474 HOH HOH A . J 7 HOH 110 476 476 HOH HOH A . J 7 HOH 111 477 477 HOH HOH A . J 7 HOH 112 478 478 HOH HOH A . J 7 HOH 113 479 479 HOH HOH A . J 7 HOH 114 480 480 HOH HOH A . J 7 HOH 115 481 481 HOH HOH A . J 7 HOH 116 482 482 HOH HOH A . J 7 HOH 117 483 483 HOH HOH A . J 7 HOH 118 484 484 HOH HOH A . J 7 HOH 119 485 485 HOH HOH A . J 7 HOH 120 486 486 HOH HOH A . J 7 HOH 121 487 487 HOH HOH A . J 7 HOH 122 492 492 HOH HOH A . J 7 HOH 123 494 494 HOH HOH A . J 7 HOH 124 495 495 HOH HOH A . J 7 HOH 125 496 496 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CAF 19 A CAF 65 ? CYS S-DIMETHYLARSINOYL-CYSTEINE 2 A CAF 84 A CAF 130 ? CYS S-DIMETHYLARSINOYL-CYSTEINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2990 ? 1 MORE -19 ? 1 'SSA (A^2)' 13800 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2015-12-09 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 REFMAC refinement 5.4.0073 ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 85 ? ? NH1 A ARG 107 ? C 1.78 2 1 OE2 A GLU 85 ? ? NH1 A ARG 107 ? C 2.08 3 1 CD A GLU 85 ? ? NH1 A ARG 107 ? C 2.10 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id CYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 56 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -178.04 _pdbx_validate_torsion.psi -3.50 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A CAF 65 ? CE2 ? A CAF 19 CE2 2 1 Y 1 A CAF 130 ? CE2 ? A CAF 84 CE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 47 ? A GLY 1 2 1 Y 1 A SER 48 ? A SER 2 3 1 Y 1 A HIS 49 ? A HIS 3 4 1 Y 1 A MET 50 ? A MET 4 5 1 Y 1 A HIS 51 ? A HIS 5 6 1 Y 1 A GLY 52 ? A GLY 6 7 1 Y 1 A GLN 53 ? A GLN 7 8 1 Y 1 A VAL 54 ? A VAL 8 9 1 Y 1 A GLN 146 ? A GLN 100 10 1 Y 1 A SER 147 ? A SER 101 11 1 Y 1 A GLN 148 ? A GLN 102 12 1 Y 1 A GLY 149 ? A GLY 103 13 1 Y 1 A VAL 150 ? A VAL 104 14 1 Y 1 A ILE 151 ? A ILE 105 15 1 Y 1 A GLU 152 ? A GLU 106 16 1 Y 1 A GLY 189 ? A GLY 143 17 1 Y 1 A GLY 190 ? A GLY 144 18 1 Y 1 A ILE 191 ? A ILE 145 19 1 Y 1 A GLY 192 ? A GLY 146 20 1 Y 1 A THR 210 ? A THR 164 21 1 Y 1 A LYS 211 ? A LYS 165 22 1 Y 1 A GLU 212 ? A GLU 166 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2S)-2-(6-chloro-2-methyl-4-phenylquinolin-3-yl)pentanoic acid' 976 3 '2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanol' P03 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'SULFATE ION' SO4 6 'CALCIUM ION' CA 7 water HOH #