data_3LPV # _entry.id 3LPV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LPV pdb_00003lpv 10.2210/pdb3lpv/pdb NDB NA0453 ? ? RCSB RCSB057580 ? ? WWPDB D_1000057580 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1AIO _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3LPV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-02-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Todd, R.C.' 1 'Lippard, S.J.' 2 # _citation.id primary _citation.title 'Structure of duplex DNA containing the cisplatin 1,2-{Pt(NH(3))(2)}(2+)-d(GpG) cross-link at 1.77A resolution.' _citation.journal_abbrev J.Inorg.Biochem. _citation.journal_volume 104 _citation.page_first 902 _citation.page_last 908 _citation.year 2010 _citation.journal_id_ASTM JIBIDJ _citation.country US _citation.journal_id_ISSN 0162-0134 _citation.journal_id_CSD 0525 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20541266 _citation.pdbx_database_id_DOI 10.1016/j.jinorgbio.2010.04.005 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Todd, R.C.' 1 ? primary 'Lippard, S.J.' 2 ? # _cell.entry_id 3LPV _cell.length_a 31.303 _cell.length_b 35.425 _cell.length_c 45.128 _cell.angle_alpha 80.06 _cell.angle_beta 84.09 _cell.angle_gamma 81.77 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LPV _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3'" 3565.316 2 ? ? ? ? 2 polymer syn "5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3'" 3761.468 2 ? ? ? ? 3 non-polymer syn Cisplatin 300.045 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 5 water nat water 18.015 148 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DC)(DT)(DG)(DG)(DT)(DC)(DT)(DC)(DC)' CCTCTGGTCTCC A,C ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DG)(DA)(DC)(DC)(DA)(DG)(DA)(DG)(DG)' GGAGACCAGAGG B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DT n 1 11 DC n 1 12 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DC n 2 7 DC n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DG n 2 12 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Synthetic Oligonucleotide' 2 1 sample ? ? ? ? ? 'Synthetic Oligonucleotide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3LPV 3LPV 1 ? CCTCTGGTCTCC ? 2 PDB 3LPV 3LPV 2 ? GGAGACCAGAGG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LPV A 1 ? 12 ? 3LPV 1 ? 12 ? 1 12 2 1 3LPV C 1 ? 12 ? 3LPV 25 ? 36 ? 25 36 3 2 3LPV B 1 ? 12 ? 3LPV 13 ? 24 ? 13 24 4 2 3LPV D 1 ? 12 ? 3LPV 37 ? 48 ? 37 48 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CPT non-polymer . Cisplatin 'diammine(dichloro)platinum' 'Cl2 H6 N2 Pt' 300.045 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 3LPV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.32 _exptl_crystal.density_percent_sol 62.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;120 mM Magnesium Acetate, 50 mM Sodium Cacodylate pH 6.5, 28% w/v PEG-4000, 1 mM spermine, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2009-05-30 _diffrn_detector.details 'Rh coated flat mirror, toroidal focusing mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 3LPV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.770 _reflns.number_obs 17639 _reflns.number_all 17639 _reflns.percent_possible_obs 96.000 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.600 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.900 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.77 1.83 85.20 0.389 ? ? 2.50 ? ? ? ? ? ? ? 1 1.83 1.91 95.00 0.351 ? ? 2.70 ? ? ? ? ? ? ? 2 1.91 1.99 96.50 0.333 ? ? 2.90 ? ? ? ? ? ? ? 3 1.99 2.10 97.20 0.229 ? ? 3.00 ? ? ? ? ? ? ? 4 2.10 2.23 97.70 0.175 ? ? 3.00 ? ? ? ? ? ? ? 5 2.23 2.40 97.50 0.140 ? ? 3.00 ? ? ? ? ? ? ? 6 2.40 2.64 97.90 0.101 ? ? 3.00 ? ? ? ? ? ? ? 7 2.64 3.03 98.20 0.093 ? ? 3.00 ? ? ? ? ? ? ? 8 3.03 3.81 98.20 0.068 ? ? 3.00 ? ? ? ? ? ? ? 9 3.81 50.00 96.50 0.090 ? ? 2.90 ? ? ? ? ? ? ? 10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3LPV _refine.ls_number_reflns_obs 16745 _refine.ls_number_reflns_all 17624 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.31 _refine.ls_d_res_high 1.77 _refine.ls_percent_reflns_obs 96.25 _refine.ls_R_factor_obs 0.17342 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17212 _refine.ls_R_factor_R_free 0.19788 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 891 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.B_iso_mean 39.042 _refine.aniso_B[1][1] -0.53 _refine.aniso_B[2][2] -0.34 _refine.aniso_B[3][3] 0.03 _refine.aniso_B[1][2] 0.09 _refine.aniso_B[1][3] 1.75 _refine.aniso_B[2][3] 1.31 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1AIO _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.096 _refine.pdbx_overall_ESU_R_Free 0.094 _refine.overall_SU_ML 0.069 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.234 _refine.overall_SU_R_Cruickshank_DPI 0.097 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 972 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 1130 _refine_hist.d_res_high 1.77 _refine_hist.d_res_low 44.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1105 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.883 3.000 ? 1704 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.080 0.200 ? 188 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 504 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 96 'X-RAY DIFFRACTION' ? r_nbd_refined 0.105 0.200 ? 131 'X-RAY DIFFRACTION' ? r_nbd_other 0.265 0.200 ? 485 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.263 0.200 ? 360 'X-RAY DIFFRACTION' ? r_nbtor_other 0.074 0.200 ? 231 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.161 0.200 ? 103 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.041 0.200 ? 3 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.146 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.166 0.200 ? 56 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.216 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.315 1.500 ? 1 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.895 3.000 ? 1104 'X-RAY DIFFRACTION' ? r_scangle_it 2.840 4.500 ? 1704 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.772 _refine_ls_shell.d_res_low 1.817 _refine_ls_shell.number_reflns_R_work 1112 _refine_ls_shell.R_factor_R_work 0.254 _refine_ls_shell.percent_reflns_obs 85.58 _refine_ls_shell.R_factor_R_free 0.335 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3LPV _struct.title 'X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-link' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LPV _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'cisplatin, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 E CPT . PT1 ? ? A DG 6 A CPT 49 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc2 metalc ? ? A DG 7 N7 ? ? ? 1_555 E CPT . PT1 ? ? A DG 7 A CPT 49 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc3 metalc ? ? L HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 1054 B MG 2002 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc4 metalc ? ? L HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 1055 B MG 2002 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc5 metalc ? ? L HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 1056 B MG 2002 1_555 ? ? ? ? ? ? ? 1.924 ? ? metalc6 metalc ? ? L HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 1057 B MG 2002 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc7 metalc ? ? L HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 1058 B MG 2002 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc8 metalc ? ? L HOH . O ? ? ? 1_555 F MG . MG ? ? B HOH 1059 B MG 2002 1_555 ? ? ? ? ? ? ? 2.275 ? ? metalc9 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 1143 B MG 2004 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc10 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 1144 B MG 2004 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc11 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 1145 B MG 2004 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc12 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 1146 B MG 2004 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc13 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 1147 B MG 2004 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc14 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 1148 B MG 2004 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc15 metalc ? ? C DG 6 N7 ? ? ? 1_555 H CPT . PT1 ? ? C DG 30 C CPT 50 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc16 metalc ? ? C DG 7 N7 ? ? ? 1_555 H CPT . PT1 ? ? C DG 31 C CPT 50 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc17 metalc ? ? N HOH . O ? ? ? 1_555 I MG . MG ? ? D HOH 1060 D MG 2001 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc18 metalc ? ? N HOH . O ? ? ? 1_555 I MG . MG ? ? D HOH 1061 D MG 2001 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc19 metalc ? ? N HOH . O ? ? ? 1_555 I MG . MG ? ? D HOH 1062 D MG 2001 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc20 metalc ? ? N HOH . O ? ? ? 1_555 I MG . MG ? ? D HOH 1063 D MG 2001 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc21 metalc ? ? N HOH . O ? ? ? 1_555 I MG . MG ? ? D HOH 1064 D MG 2001 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc22 metalc ? ? N HOH . O ? ? ? 1_555 I MG . MG ? ? D HOH 1065 D MG 2001 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc23 metalc ? ? N HOH . O ? ? ? 1_555 J MG . MG ? ? D HOH 1137 D MG 2003 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc24 metalc ? ? N HOH . O ? ? ? 1_555 J MG . MG ? ? D HOH 1138 D MG 2003 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc25 metalc ? ? N HOH . O ? ? ? 1_555 J MG . MG ? ? D HOH 1139 D MG 2003 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc26 metalc ? ? N HOH . O ? ? ? 1_555 J MG . MG ? ? D HOH 1140 D MG 2003 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc27 metalc ? ? N HOH . O ? ? ? 1_555 J MG . MG ? ? D HOH 1141 D MG 2003 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc28 metalc ? ? N HOH . O ? ? ? 1_555 J MG . MG ? ? D HOH 1142 D MG 2003 1_555 ? ? ? ? ? ? ? 2.179 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 12 N1 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 12 O6 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 12 N2 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 27 D DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 27 D DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 29 D DA 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 29 D DA 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 32 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 32 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 34 D DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 34 D DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CPT 49 ? 6 'BINDING SITE FOR RESIDUE CPT A 49' AC2 Software B MG 2002 ? 6 'BINDING SITE FOR RESIDUE MG B 2002' AC3 Software B MG 2004 ? 6 'BINDING SITE FOR RESIDUE MG B 2004' AC4 Software C CPT 50 ? 6 'BINDING SITE FOR RESIDUE CPT C 50' AC5 Software D MG 2001 ? 6 'BINDING SITE FOR RESIDUE MG D 2001' AC6 Software D MG 2003 ? 6 'BINDING SITE FOR RESIDUE MG D 2003' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DT A 5 ? DT A 5 . ? 1_555 ? 2 AC1 6 DG A 6 ? DG A 6 . ? 1_555 ? 3 AC1 6 DG A 7 ? DG A 7 . ? 1_555 ? 4 AC1 6 HOH K . ? HOH A 1053 . ? 1_555 ? 5 AC1 6 HOH K . ? HOH A 1074 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH A 1076 . ? 1_555 ? 7 AC2 6 HOH L . ? HOH B 1054 . ? 1_555 ? 8 AC2 6 HOH L . ? HOH B 1055 . ? 1_555 ? 9 AC2 6 HOH L . ? HOH B 1056 . ? 1_555 ? 10 AC2 6 HOH L . ? HOH B 1057 . ? 1_555 ? 11 AC2 6 HOH L . ? HOH B 1058 . ? 1_555 ? 12 AC2 6 HOH L . ? HOH B 1059 . ? 1_555 ? 13 AC3 6 HOH L . ? HOH B 1143 . ? 1_555 ? 14 AC3 6 HOH L . ? HOH B 1144 . ? 1_555 ? 15 AC3 6 HOH L . ? HOH B 1145 . ? 1_555 ? 16 AC3 6 HOH L . ? HOH B 1146 . ? 1_555 ? 17 AC3 6 HOH L . ? HOH B 1147 . ? 1_555 ? 18 AC3 6 HOH L . ? HOH B 1148 . ? 1_555 ? 19 AC4 6 DT C 5 ? DT C 29 . ? 1_555 ? 20 AC4 6 DG C 6 ? DG C 30 . ? 1_555 ? 21 AC4 6 DG C 7 ? DG C 31 . ? 1_555 ? 22 AC4 6 HOH M . ? HOH C 1020 . ? 1_555 ? 23 AC4 6 HOH M . ? HOH C 1073 . ? 1_555 ? 24 AC4 6 HOH M . ? HOH C 1121 . ? 1_555 ? 25 AC5 6 HOH N . ? HOH D 1060 . ? 1_555 ? 26 AC5 6 HOH N . ? HOH D 1061 . ? 1_555 ? 27 AC5 6 HOH N . ? HOH D 1062 . ? 1_555 ? 28 AC5 6 HOH N . ? HOH D 1063 . ? 1_555 ? 29 AC5 6 HOH N . ? HOH D 1064 . ? 1_555 ? 30 AC5 6 HOH N . ? HOH D 1065 . ? 1_555 ? 31 AC6 6 HOH N . ? HOH D 1137 . ? 1_555 ? 32 AC6 6 HOH N . ? HOH D 1138 . ? 1_555 ? 33 AC6 6 HOH N . ? HOH D 1139 . ? 1_555 ? 34 AC6 6 HOH N . ? HOH D 1140 . ? 1_555 ? 35 AC6 6 HOH N . ? HOH D 1141 . ? 1_555 ? 36 AC6 6 HOH N . ? HOH D 1142 . ? 1_555 ? # _atom_sites.entry_id 3LPV _atom_sites.fract_transf_matrix[1][1] 0.031946 _atom_sites.fract_transf_matrix[1][2] -0.004621 _atom_sites.fract_transf_matrix[1][3] -0.002600 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028522 _atom_sites.fract_transf_matrix[2][3] -0.004634 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022570 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P PT # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DC 12 12 12 DC DC A . n B 2 1 DG 1 13 13 DG DG B . n B 2 2 DG 2 14 14 DG DG B . n B 2 3 DA 3 15 15 DA DA B . n B 2 4 DG 4 16 16 DG DG B . n B 2 5 DA 5 17 17 DA DA B . n B 2 6 DC 6 18 18 DC DC B . n B 2 7 DC 7 19 19 DC DC B . n B 2 8 DA 8 20 20 DA DA B . n B 2 9 DG 9 21 21 DG DG B . n B 2 10 DA 10 22 22 DA DA B . n B 2 11 DG 11 23 23 DG DG B . n B 2 12 DG 12 24 24 DG DG B . n C 1 1 DC 1 25 25 DC DC C . n C 1 2 DC 2 26 26 DC DC C . n C 1 3 DT 3 27 27 DT DT C . n C 1 4 DC 4 28 28 DC DC C . n C 1 5 DT 5 29 29 DT DT C . n C 1 6 DG 6 30 30 DG DG C . n C 1 7 DG 7 31 31 DG DG C . n C 1 8 DT 8 32 32 DT DT C . n C 1 9 DC 9 33 33 DC DC C . n C 1 10 DT 10 34 34 DT DT C . n C 1 11 DC 11 35 35 DC DC C . n C 1 12 DC 12 36 36 DC DC C . n D 2 1 DG 1 37 37 DG DG D . n D 2 2 DG 2 38 38 DG DG D . n D 2 3 DA 3 39 39 DA DA D . n D 2 4 DG 4 40 40 DG DG D . n D 2 5 DA 5 41 41 DA DA D . n D 2 6 DC 6 42 42 DC DC D . n D 2 7 DC 7 43 43 DC DC D . n D 2 8 DA 8 44 44 DA DA D . n D 2 9 DG 9 45 45 DG DG D . n D 2 10 DA 10 46 46 DA DA D . n D 2 11 DG 11 47 47 DG DG D . n D 2 12 DG 12 48 48 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CPT 1 49 49 CPT CPT A . F 4 MG 1 2002 2002 MG MG B . G 4 MG 1 2004 2004 MG MG B . H 3 CPT 1 50 50 CPT CPT C . I 4 MG 1 2001 2001 MG MG D . J 4 MG 1 2003 2003 MG MG D . K 5 HOH 1 1004 1004 HOH HOH A . K 5 HOH 2 1005 1005 HOH HOH A . K 5 HOH 3 1006 1006 HOH HOH A . K 5 HOH 4 1007 1007 HOH HOH A . K 5 HOH 5 1009 1009 HOH HOH A . K 5 HOH 6 1015 1015 HOH HOH A . K 5 HOH 7 1017 1017 HOH HOH A . K 5 HOH 8 1018 1018 HOH HOH A . K 5 HOH 9 1021 1021 HOH HOH A . K 5 HOH 10 1027 1027 HOH HOH A . K 5 HOH 11 1028 1028 HOH HOH A . K 5 HOH 12 1030 1030 HOH HOH A . K 5 HOH 13 1035 1035 HOH HOH A . K 5 HOH 14 1037 1037 HOH HOH A . K 5 HOH 15 1041 1041 HOH HOH A . K 5 HOH 16 1042 1042 HOH HOH A . K 5 HOH 17 1048 1048 HOH HOH A . K 5 HOH 18 1053 1053 HOH HOH A . K 5 HOH 19 1069 1069 HOH HOH A . K 5 HOH 20 1070 1070 HOH HOH A . K 5 HOH 21 1074 1074 HOH HOH A . K 5 HOH 22 1075 1075 HOH HOH A . K 5 HOH 23 1076 1076 HOH HOH A . K 5 HOH 24 1077 1077 HOH HOH A . K 5 HOH 25 1078 1078 HOH HOH A . K 5 HOH 26 1079 1079 HOH HOH A . K 5 HOH 27 1080 1080 HOH HOH A . K 5 HOH 28 1086 1086 HOH HOH A . K 5 HOH 29 1088 1088 HOH HOH A . K 5 HOH 30 1096 1096 HOH HOH A . K 5 HOH 31 1097 1097 HOH HOH A . K 5 HOH 32 1099 1099 HOH HOH A . K 5 HOH 33 1100 1100 HOH HOH A . K 5 HOH 34 1108 1108 HOH HOH A . K 5 HOH 35 1111 1111 HOH HOH A . K 5 HOH 36 1114 1114 HOH HOH A . K 5 HOH 37 1118 1118 HOH HOH A . K 5 HOH 38 1125 1125 HOH HOH A . K 5 HOH 39 1129 1129 HOH HOH A . K 5 HOH 40 1131 1131 HOH HOH A . K 5 HOH 41 1132 1132 HOH HOH A . L 5 HOH 1 1013 1013 HOH HOH B . L 5 HOH 2 1016 1016 HOH HOH B . L 5 HOH 3 1019 1019 HOH HOH B . L 5 HOH 4 1024 1024 HOH HOH B . L 5 HOH 5 1025 1025 HOH HOH B . L 5 HOH 6 1033 1033 HOH HOH B . L 5 HOH 7 1038 1038 HOH HOH B . L 5 HOH 8 1039 1039 HOH HOH B . L 5 HOH 9 1043 1043 HOH HOH B . L 5 HOH 10 1044 1044 HOH HOH B . L 5 HOH 11 1045 1045 HOH HOH B . L 5 HOH 12 1046 1046 HOH HOH B . L 5 HOH 13 1050 1050 HOH HOH B . L 5 HOH 14 1051 1051 HOH HOH B . L 5 HOH 15 1052 1052 HOH HOH B . L 5 HOH 16 1054 1054 HOH HOH B . L 5 HOH 17 1055 1055 HOH HOH B . L 5 HOH 18 1056 1056 HOH HOH B . L 5 HOH 19 1057 1057 HOH HOH B . L 5 HOH 20 1058 1058 HOH HOH B . L 5 HOH 21 1059 1059 HOH HOH B . L 5 HOH 22 1066 1066 HOH HOH B . L 5 HOH 23 1090 1090 HOH HOH B . L 5 HOH 24 1093 1093 HOH HOH B . L 5 HOH 25 1094 1094 HOH HOH B . L 5 HOH 26 1101 1101 HOH HOH B . L 5 HOH 27 1103 1103 HOH HOH B . L 5 HOH 28 1104 1104 HOH HOH B . L 5 HOH 29 1109 1109 HOH HOH B . L 5 HOH 30 1110 1110 HOH HOH B . L 5 HOH 31 1120 1120 HOH HOH B . L 5 HOH 32 1124 1124 HOH HOH B . L 5 HOH 33 1134 1134 HOH HOH B . L 5 HOH 34 1143 1143 HOH HOH B . L 5 HOH 35 1144 1144 HOH HOH B . L 5 HOH 36 1145 1145 HOH HOH B . L 5 HOH 37 1146 1146 HOH HOH B . L 5 HOH 38 1147 1147 HOH HOH B . L 5 HOH 39 1148 1148 HOH HOH B . M 5 HOH 1 1001 1001 HOH HOH C . M 5 HOH 2 1002 1002 HOH HOH C . M 5 HOH 3 1003 1003 HOH HOH C . M 5 HOH 4 1008 1008 HOH HOH C . M 5 HOH 5 1010 1010 HOH HOH C . M 5 HOH 6 1012 1012 HOH HOH C . M 5 HOH 7 1014 1014 HOH HOH C . M 5 HOH 8 1020 1020 HOH HOH C . M 5 HOH 9 1022 1022 HOH HOH C . M 5 HOH 10 1029 1029 HOH HOH C . M 5 HOH 11 1031 1031 HOH HOH C . M 5 HOH 12 1040 1040 HOH HOH C . M 5 HOH 13 1047 1047 HOH HOH C . M 5 HOH 14 1049 1049 HOH HOH C . M 5 HOH 15 1071 1071 HOH HOH C . M 5 HOH 16 1072 1072 HOH HOH C . M 5 HOH 17 1073 1073 HOH HOH C . M 5 HOH 18 1081 1081 HOH HOH C . M 5 HOH 19 1082 1082 HOH HOH C . M 5 HOH 20 1084 1084 HOH HOH C . M 5 HOH 21 1085 1085 HOH HOH C . M 5 HOH 22 1087 1087 HOH HOH C . M 5 HOH 23 1095 1095 HOH HOH C . M 5 HOH 24 1105 1105 HOH HOH C . M 5 HOH 25 1106 1106 HOH HOH C . M 5 HOH 26 1112 1112 HOH HOH C . M 5 HOH 27 1113 1113 HOH HOH C . M 5 HOH 28 1116 1116 HOH HOH C . M 5 HOH 29 1121 1121 HOH HOH C . M 5 HOH 30 1126 1126 HOH HOH C . M 5 HOH 31 1127 1127 HOH HOH C . M 5 HOH 32 1130 1130 HOH HOH C . M 5 HOH 33 1136 1136 HOH HOH C . N 5 HOH 1 1011 1011 HOH HOH D . N 5 HOH 2 1023 1023 HOH HOH D . N 5 HOH 3 1026 1026 HOH HOH D . N 5 HOH 4 1032 1032 HOH HOH D . N 5 HOH 5 1034 1034 HOH HOH D . N 5 HOH 6 1036 1036 HOH HOH D . N 5 HOH 7 1060 1060 HOH HOH D . N 5 HOH 8 1061 1061 HOH HOH D . N 5 HOH 9 1062 1062 HOH HOH D . N 5 HOH 10 1063 1063 HOH HOH D . N 5 HOH 11 1064 1064 HOH HOH D . N 5 HOH 12 1065 1065 HOH HOH D . N 5 HOH 13 1067 1067 HOH HOH D . N 5 HOH 14 1068 1068 HOH HOH D . N 5 HOH 15 1083 1083 HOH HOH D . N 5 HOH 16 1089 1089 HOH HOH D . N 5 HOH 17 1091 1091 HOH HOH D . N 5 HOH 18 1092 1092 HOH HOH D . N 5 HOH 19 1098 1098 HOH HOH D . N 5 HOH 20 1102 1102 HOH HOH D . N 5 HOH 21 1107 1107 HOH HOH D . N 5 HOH 22 1115 1115 HOH HOH D . N 5 HOH 23 1117 1117 HOH HOH D . N 5 HOH 24 1119 1119 HOH HOH D . N 5 HOH 25 1122 1122 HOH HOH D . N 5 HOH 26 1123 1123 HOH HOH D . N 5 HOH 27 1128 1128 HOH HOH D . N 5 HOH 28 1133 1133 HOH HOH D . N 5 HOH 29 1135 1135 HOH HOH D . N 5 HOH 30 1137 1137 HOH HOH D . N 5 HOH 31 1138 1138 HOH HOH D . N 5 HOH 32 1139 1139 HOH HOH D . N 5 HOH 33 1140 1140 HOH HOH D . N 5 HOH 34 1141 1141 HOH HOH D . N 5 HOH 35 1142 1142 HOH HOH D . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MAJOR GROOVE BINDER' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,K,L 2 1 C,D,H,I,J,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1480 ? 1 MORE -27 ? 1 'SSA (A^2)' 4490 ? 2 'ABSA (A^2)' 1480 ? 2 MORE -28 ? 2 'SSA (A^2)' 4490 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N1 ? E CPT . ? A CPT 49 ? 1_555 90.9 ? 2 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N2 ? E CPT . ? A CPT 49 ? 1_555 177.3 ? 3 N1 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N2 ? E CPT . ? A CPT 49 ? 1_555 87.9 ? 4 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 90.9 ? 5 N1 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 178.0 ? 6 N2 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 90.3 ? 7 O ? L HOH . ? B HOH 1054 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1055 ? 1_555 174.4 ? 8 O ? L HOH . ? B HOH 1054 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1056 ? 1_555 95.6 ? 9 O ? L HOH . ? B HOH 1055 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1056 ? 1_555 83.3 ? 10 O ? L HOH . ? B HOH 1054 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1057 ? 1_555 99.9 ? 11 O ? L HOH . ? B HOH 1055 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1057 ? 1_555 85.7 ? 12 O ? L HOH . ? B HOH 1056 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1057 ? 1_555 99.5 ? 13 O ? L HOH . ? B HOH 1054 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1058 ? 1_555 86.9 ? 14 O ? L HOH . ? B HOH 1055 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1058 ? 1_555 87.7 ? 15 O ? L HOH . ? B HOH 1056 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1058 ? 1_555 91.6 ? 16 O ? L HOH . ? B HOH 1057 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1058 ? 1_555 166.3 ? 17 O ? L HOH . ? B HOH 1054 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1059 ? 1_555 92.1 ? 18 O ? L HOH . ? B HOH 1055 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1059 ? 1_555 89.0 ? 19 O ? L HOH . ? B HOH 1056 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1059 ? 1_555 172.3 ? 20 O ? L HOH . ? B HOH 1057 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1059 ? 1_555 79.2 ? 21 O ? L HOH . ? B HOH 1058 ? 1_555 MG ? F MG . ? B MG 2002 ? 1_555 O ? L HOH . ? B HOH 1059 ? 1_555 88.8 ? 22 O ? L HOH . ? B HOH 1143 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1144 ? 1_555 93.3 ? 23 O ? L HOH . ? B HOH 1143 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1145 ? 1_555 86.4 ? 24 O ? L HOH . ? B HOH 1144 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1145 ? 1_555 179.4 ? 25 O ? L HOH . ? B HOH 1143 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1146 ? 1_555 179.5 ? 26 O ? L HOH . ? B HOH 1144 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1146 ? 1_555 86.3 ? 27 O ? L HOH . ? B HOH 1145 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1146 ? 1_555 94.1 ? 28 O ? L HOH . ? B HOH 1143 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1147 ? 1_555 90.6 ? 29 O ? L HOH . ? B HOH 1144 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1147 ? 1_555 87.4 ? 30 O ? L HOH . ? B HOH 1145 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1147 ? 1_555 93.1 ? 31 O ? L HOH . ? B HOH 1146 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1147 ? 1_555 89.1 ? 32 O ? L HOH . ? B HOH 1143 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1148 ? 1_555 89.8 ? 33 O ? L HOH . ? B HOH 1144 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1148 ? 1_555 92.4 ? 34 O ? L HOH . ? B HOH 1145 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1148 ? 1_555 87.1 ? 35 O ? L HOH . ? B HOH 1146 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1148 ? 1_555 90.5 ? 36 O ? L HOH . ? B HOH 1147 ? 1_555 MG ? G MG . ? B MG 2004 ? 1_555 O ? L HOH . ? B HOH 1148 ? 1_555 179.6 ? 37 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? H CPT . ? C CPT 50 ? 1_555 N1 ? H CPT . ? C CPT 50 ? 1_555 97.3 ? 38 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? H CPT . ? C CPT 50 ? 1_555 N2 ? H CPT . ? C CPT 50 ? 1_555 177.4 ? 39 N1 ? H CPT . ? C CPT 50 ? 1_555 PT1 ? H CPT . ? C CPT 50 ? 1_555 N2 ? H CPT . ? C CPT 50 ? 1_555 85.2 ? 40 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? H CPT . ? C CPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 89.1 ? 41 N1 ? H CPT . ? C CPT 50 ? 1_555 PT1 ? H CPT . ? C CPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 172.8 ? 42 N2 ? H CPT . ? C CPT 50 ? 1_555 PT1 ? H CPT . ? C CPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 88.3 ? 43 O ? N HOH . ? D HOH 1060 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1061 ? 1_555 90.9 ? 44 O ? N HOH . ? D HOH 1060 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1062 ? 1_555 95.2 ? 45 O ? N HOH . ? D HOH 1061 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1062 ? 1_555 172.2 ? 46 O ? N HOH . ? D HOH 1060 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1063 ? 1_555 89.9 ? 47 O ? N HOH . ? D HOH 1061 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1063 ? 1_555 92.2 ? 48 O ? N HOH . ? D HOH 1062 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1063 ? 1_555 83.0 ? 49 O ? N HOH . ? D HOH 1060 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1064 ? 1_555 89.6 ? 50 O ? N HOH . ? D HOH 1061 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1064 ? 1_555 91.9 ? 51 O ? N HOH . ? D HOH 1062 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1064 ? 1_555 93.0 ? 52 O ? N HOH . ? D HOH 1063 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1064 ? 1_555 175.9 ? 53 O ? N HOH . ? D HOH 1060 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1065 ? 1_555 162.6 ? 54 O ? N HOH . ? D HOH 1061 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1065 ? 1_555 74.0 ? 55 O ? N HOH . ? D HOH 1062 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1065 ? 1_555 99.2 ? 56 O ? N HOH . ? D HOH 1063 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1065 ? 1_555 82.1 ? 57 O ? N HOH . ? D HOH 1064 ? 1_555 MG ? I MG . ? D MG 2001 ? 1_555 O ? N HOH . ? D HOH 1065 ? 1_555 99.5 ? 58 O ? N HOH . ? D HOH 1137 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1138 ? 1_555 89.4 ? 59 O ? N HOH . ? D HOH 1137 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1139 ? 1_555 90.2 ? 60 O ? N HOH . ? D HOH 1138 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1139 ? 1_555 179.6 ? 61 O ? N HOH . ? D HOH 1137 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1140 ? 1_555 179.2 ? 62 O ? N HOH . ? D HOH 1138 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1140 ? 1_555 91.4 ? 63 O ? N HOH . ? D HOH 1139 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1140 ? 1_555 89.0 ? 64 O ? N HOH . ? D HOH 1137 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1141 ? 1_555 90.2 ? 65 O ? N HOH . ? D HOH 1138 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1141 ? 1_555 90.9 ? 66 O ? N HOH . ? D HOH 1139 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1141 ? 1_555 88.9 ? 67 O ? N HOH . ? D HOH 1140 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1141 ? 1_555 89.8 ? 68 O ? N HOH . ? D HOH 1137 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1142 ? 1_555 90.0 ? 69 O ? N HOH . ? D HOH 1138 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1142 ? 1_555 88.6 ? 70 O ? N HOH . ? D HOH 1139 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1142 ? 1_555 91.5 ? 71 O ? N HOH . ? D HOH 1140 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1142 ? 1_555 90.0 ? 72 O ? N HOH . ? D HOH 1141 ? 1_555 MG ? J MG . ? D MG 2003 ? 1_555 O ? N HOH . ? D HOH 1142 ? 1_555 179.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_entry_details.entry_id 3LPV _pdbx_entry_details.nonpolymer_details ;NUMBERING OF WATER MOLECULES IN THE PUBLICATION TEXT REFER THE LAST THREE DIGITS OF THE HOH RESIDUE NUMBER IN THE PDB FILE. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.379 1.419 -0.040 0.006 N 2 1 "O3'" B DA 22 ? ? "C3'" B DA 22 ? ? 1.369 1.419 -0.050 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 5 ? ? "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? 101.93 104.50 -2.57 0.40 N 2 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.30 104.50 -3.20 0.40 N 3 1 C5 A DG 7 ? ? N7 A DG 7 ? ? C8 A DG 7 ? ? 107.46 104.30 3.16 0.50 N 4 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? "C1'" B DG 16 ? ? 96.74 102.40 -5.66 0.80 N 5 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 112.11 108.30 3.81 0.30 N 6 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 97.48 102.20 -4.72 0.70 N 7 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.52 108.30 3.22 0.30 N 8 1 "O4'" B DA 22 ? ? "C4'" B DA 22 ? ? "C3'" B DA 22 ? ? 100.78 104.50 -3.72 0.40 N 9 1 "O5'" B DG 23 ? ? P B DG 23 ? ? OP2 B DG 23 ? ? 99.68 105.70 -6.02 0.90 N 10 1 "O4'" B DG 23 ? ? "C4'" B DG 23 ? ? "C3'" B DG 23 ? ? 100.84 104.50 -3.66 0.40 N 11 1 "C4'" B DG 23 ? ? "C3'" B DG 23 ? ? "C2'" B DG 23 ? ? 94.79 102.20 -7.41 0.70 N 12 1 "O4'" C DC 25 ? ? "C1'" C DC 25 ? ? N1 C DC 25 ? ? 111.06 108.30 2.76 0.30 N 13 1 "O4'" C DT 27 ? ? "C4'" C DT 27 ? ? "C3'" C DT 27 ? ? 101.42 104.50 -3.08 0.40 N 14 1 C4 C DT 27 ? ? C5 C DT 27 ? ? C7 C DT 27 ? ? 123.24 119.00 4.24 0.60 N 15 1 C6 C DT 27 ? ? C5 C DT 27 ? ? C7 C DT 27 ? ? 118.05 122.90 -4.85 0.60 N 16 1 C4 C DG 30 ? ? C5 C DG 30 ? ? N7 C DG 30 ? ? 113.89 110.80 3.09 0.40 N 17 1 C5 C DG 30 ? ? N7 C DG 30 ? ? C8 C DG 30 ? ? 99.62 104.30 -4.68 0.50 N 18 1 N7 C DG 30 ? ? C8 C DG 30 ? ? N9 C DG 30 ? ? 116.48 113.10 3.38 0.50 N 19 1 C5 C DG 30 ? ? C6 C DG 30 ? ? O6 C DG 30 ? ? 124.83 128.60 -3.77 0.60 N 20 1 "O4'" D DG 40 ? ? "C1'" D DG 40 ? ? N9 D DG 40 ? ? 111.25 108.30 2.95 0.30 N 21 1 "O4'" D DA 41 ? ? "C4'" D DA 41 ? ? "C3'" D DA 41 ? ? 100.49 104.50 -4.01 0.40 N 22 1 "O4'" D DC 42 ? ? "C1'" D DC 42 ? ? N1 D DC 42 ? ? 110.36 108.30 2.06 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CPT PT1 PT N N 1 CPT N1 N N N 2 CPT N2 N N N 3 CPT H11 H N N 4 CPT H12 H N N 5 CPT H21 H N N 6 CPT H22 H N N 7 CPT CL2 CL N N 8 CPT CL1 CL N N 9 CPT H13 H N N 10 CPT H23 H N N 11 DA OP3 O N N 12 DA P P N N 13 DA OP1 O N N 14 DA OP2 O N N 15 DA "O5'" O N N 16 DA "C5'" C N N 17 DA "C4'" C N R 18 DA "O4'" O N N 19 DA "C3'" C N S 20 DA "O3'" O N N 21 DA "C2'" C N N 22 DA "C1'" C N R 23 DA N9 N Y N 24 DA C8 C Y N 25 DA N7 N Y N 26 DA C5 C Y N 27 DA C6 C Y N 28 DA N6 N N N 29 DA N1 N Y N 30 DA C2 C Y N 31 DA N3 N Y N 32 DA C4 C Y N 33 DA HOP3 H N N 34 DA HOP2 H N N 35 DA "H5'" H N N 36 DA "H5''" H N N 37 DA "H4'" H N N 38 DA "H3'" H N N 39 DA "HO3'" H N N 40 DA "H2'" H N N 41 DA "H2''" H N N 42 DA "H1'" H N N 43 DA H8 H N N 44 DA H61 H N N 45 DA H62 H N N 46 DA H2 H N N 47 DC OP3 O N N 48 DC P P N N 49 DC OP1 O N N 50 DC OP2 O N N 51 DC "O5'" O N N 52 DC "C5'" C N N 53 DC "C4'" C N R 54 DC "O4'" O N N 55 DC "C3'" C N S 56 DC "O3'" O N N 57 DC "C2'" C N N 58 DC "C1'" C N R 59 DC N1 N N N 60 DC C2 C N N 61 DC O2 O N N 62 DC N3 N N N 63 DC C4 C N N 64 DC N4 N N N 65 DC C5 C N N 66 DC C6 C N N 67 DC HOP3 H N N 68 DC HOP2 H N N 69 DC "H5'" H N N 70 DC "H5''" H N N 71 DC "H4'" H N N 72 DC "H3'" H N N 73 DC "HO3'" H N N 74 DC "H2'" H N N 75 DC "H2''" H N N 76 DC "H1'" H N N 77 DC H41 H N N 78 DC H42 H N N 79 DC H5 H N N 80 DC H6 H N N 81 DG OP3 O N N 82 DG P P N N 83 DG OP1 O N N 84 DG OP2 O N N 85 DG "O5'" O N N 86 DG "C5'" C N N 87 DG "C4'" C N R 88 DG "O4'" O N N 89 DG "C3'" C N S 90 DG "O3'" O N N 91 DG "C2'" C N N 92 DG "C1'" C N R 93 DG N9 N Y N 94 DG C8 C Y N 95 DG N7 N Y N 96 DG C5 C Y N 97 DG C6 C N N 98 DG O6 O N N 99 DG N1 N N N 100 DG C2 C N N 101 DG N2 N N N 102 DG N3 N N N 103 DG C4 C Y N 104 DG HOP3 H N N 105 DG HOP2 H N N 106 DG "H5'" H N N 107 DG "H5''" H N N 108 DG "H4'" H N N 109 DG "H3'" H N N 110 DG "HO3'" H N N 111 DG "H2'" H N N 112 DG "H2''" H N N 113 DG "H1'" H N N 114 DG H8 H N N 115 DG H1 H N N 116 DG H21 H N N 117 DG H22 H N N 118 DT OP3 O N N 119 DT P P N N 120 DT OP1 O N N 121 DT OP2 O N N 122 DT "O5'" O N N 123 DT "C5'" C N N 124 DT "C4'" C N R 125 DT "O4'" O N N 126 DT "C3'" C N S 127 DT "O3'" O N N 128 DT "C2'" C N N 129 DT "C1'" C N R 130 DT N1 N N N 131 DT C2 C N N 132 DT O2 O N N 133 DT N3 N N N 134 DT C4 C N N 135 DT O4 O N N 136 DT C5 C N N 137 DT C7 C N N 138 DT C6 C N N 139 DT HOP3 H N N 140 DT HOP2 H N N 141 DT "H5'" H N N 142 DT "H5''" H N N 143 DT "H4'" H N N 144 DT "H3'" H N N 145 DT "HO3'" H N N 146 DT "H2'" H N N 147 DT "H2''" H N N 148 DT "H1'" H N N 149 DT H3 H N N 150 DT H71 H N N 151 DT H72 H N N 152 DT H73 H N N 153 DT H6 H N N 154 HOH O O N N 155 HOH H1 H N N 156 HOH H2 H N N 157 MG MG MG N N 158 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CPT PT1 N1 sing N N 1 CPT PT1 N2 sing N N 2 CPT N1 H11 sing N N 3 CPT N1 H12 sing N N 4 CPT N1 H13 sing N N 5 CPT N2 H21 sing N N 6 CPT N2 H22 sing N N 7 CPT N2 H23 sing N N 8 CPT CL2 PT1 sing N N 9 CPT CL1 PT1 sing N N 10 DA OP3 P sing N N 11 DA OP3 HOP3 sing N N 12 DA P OP1 doub N N 13 DA P OP2 sing N N 14 DA P "O5'" sing N N 15 DA OP2 HOP2 sing N N 16 DA "O5'" "C5'" sing N N 17 DA "C5'" "C4'" sing N N 18 DA "C5'" "H5'" sing N N 19 DA "C5'" "H5''" sing N N 20 DA "C4'" "O4'" sing N N 21 DA "C4'" "C3'" sing N N 22 DA "C4'" "H4'" sing N N 23 DA "O4'" "C1'" sing N N 24 DA "C3'" "O3'" sing N N 25 DA "C3'" "C2'" sing N N 26 DA "C3'" "H3'" sing N N 27 DA "O3'" "HO3'" sing N N 28 DA "C2'" "C1'" sing N N 29 DA "C2'" "H2'" sing N N 30 DA "C2'" "H2''" sing N N 31 DA "C1'" N9 sing N N 32 DA "C1'" "H1'" sing N N 33 DA N9 C8 sing Y N 34 DA N9 C4 sing Y N 35 DA C8 N7 doub Y N 36 DA C8 H8 sing N N 37 DA N7 C5 sing Y N 38 DA C5 C6 sing Y N 39 DA C5 C4 doub Y N 40 DA C6 N6 sing N N 41 DA C6 N1 doub Y N 42 DA N6 H61 sing N N 43 DA N6 H62 sing N N 44 DA N1 C2 sing Y N 45 DA C2 N3 doub Y N 46 DA C2 H2 sing N N 47 DA N3 C4 sing Y N 48 DC OP3 P sing N N 49 DC OP3 HOP3 sing N N 50 DC P OP1 doub N N 51 DC P OP2 sing N N 52 DC P "O5'" sing N N 53 DC OP2 HOP2 sing N N 54 DC "O5'" "C5'" sing N N 55 DC "C5'" "C4'" sing N N 56 DC "C5'" "H5'" sing N N 57 DC "C5'" "H5''" sing N N 58 DC "C4'" "O4'" sing N N 59 DC "C4'" "C3'" sing N N 60 DC "C4'" "H4'" sing N N 61 DC "O4'" "C1'" sing N N 62 DC "C3'" "O3'" sing N N 63 DC "C3'" "C2'" sing N N 64 DC "C3'" "H3'" sing N N 65 DC "O3'" "HO3'" sing N N 66 DC "C2'" "C1'" sing N N 67 DC "C2'" "H2'" sing N N 68 DC "C2'" "H2''" sing N N 69 DC "C1'" N1 sing N N 70 DC "C1'" "H1'" sing N N 71 DC N1 C2 sing N N 72 DC N1 C6 sing N N 73 DC C2 O2 doub N N 74 DC C2 N3 sing N N 75 DC N3 C4 doub N N 76 DC C4 N4 sing N N 77 DC C4 C5 sing N N 78 DC N4 H41 sing N N 79 DC N4 H42 sing N N 80 DC C5 C6 doub N N 81 DC C5 H5 sing N N 82 DC C6 H6 sing N N 83 DG OP3 P sing N N 84 DG OP3 HOP3 sing N N 85 DG P OP1 doub N N 86 DG P OP2 sing N N 87 DG P "O5'" sing N N 88 DG OP2 HOP2 sing N N 89 DG "O5'" "C5'" sing N N 90 DG "C5'" "C4'" sing N N 91 DG "C5'" "H5'" sing N N 92 DG "C5'" "H5''" sing N N 93 DG "C4'" "O4'" sing N N 94 DG "C4'" "C3'" sing N N 95 DG "C4'" "H4'" sing N N 96 DG "O4'" "C1'" sing N N 97 DG "C3'" "O3'" sing N N 98 DG "C3'" "C2'" sing N N 99 DG "C3'" "H3'" sing N N 100 DG "O3'" "HO3'" sing N N 101 DG "C2'" "C1'" sing N N 102 DG "C2'" "H2'" sing N N 103 DG "C2'" "H2''" sing N N 104 DG "C1'" N9 sing N N 105 DG "C1'" "H1'" sing N N 106 DG N9 C8 sing Y N 107 DG N9 C4 sing Y N 108 DG C8 N7 doub Y N 109 DG C8 H8 sing N N 110 DG N7 C5 sing Y N 111 DG C5 C6 sing N N 112 DG C5 C4 doub Y N 113 DG C6 O6 doub N N 114 DG C6 N1 sing N N 115 DG N1 C2 sing N N 116 DG N1 H1 sing N N 117 DG C2 N2 sing N N 118 DG C2 N3 doub N N 119 DG N2 H21 sing N N 120 DG N2 H22 sing N N 121 DG N3 C4 sing N N 122 DT OP3 P sing N N 123 DT OP3 HOP3 sing N N 124 DT P OP1 doub N N 125 DT P OP2 sing N N 126 DT P "O5'" sing N N 127 DT OP2 HOP2 sing N N 128 DT "O5'" "C5'" sing N N 129 DT "C5'" "C4'" sing N N 130 DT "C5'" "H5'" sing N N 131 DT "C5'" "H5''" sing N N 132 DT "C4'" "O4'" sing N N 133 DT "C4'" "C3'" sing N N 134 DT "C4'" "H4'" sing N N 135 DT "O4'" "C1'" sing N N 136 DT "C3'" "O3'" sing N N 137 DT "C3'" "C2'" sing N N 138 DT "C3'" "H3'" sing N N 139 DT "O3'" "HO3'" sing N N 140 DT "C2'" "C1'" sing N N 141 DT "C2'" "H2'" sing N N 142 DT "C2'" "H2''" sing N N 143 DT "C1'" N1 sing N N 144 DT "C1'" "H1'" sing N N 145 DT N1 C2 sing N N 146 DT N1 C6 sing N N 147 DT C2 O2 doub N N 148 DT C2 N3 sing N N 149 DT N3 C4 sing N N 150 DT N3 H3 sing N N 151 DT C4 O4 doub N N 152 DT C4 C5 sing N N 153 DT C5 C7 sing N N 154 DT C5 C6 doub N N 155 DT C7 H71 sing N N 156 DT C7 H72 sing N N 157 DT C7 H73 sing N N 158 DT C6 H6 sing N N 159 HOH O H1 sing N N 160 HOH O H2 sing N N 161 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3LPV 'double helix' 3LPV 'a-form double helix' 3LPV 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.147 -0.196 -0.182 5.716 -3.127 -0.686 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.374 -0.151 -0.056 2.186 -7.282 -0.740 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DT 3 1_555 B DA 10 1_555 0.023 -0.148 -0.109 2.393 -13.724 3.683 3 A_DT3:DA22_B A 3 ? B 22 ? 20 1 1 A DC 4 1_555 B DG 9 1_555 0.245 -0.130 0.046 -2.379 -7.984 0.817 4 A_DC4:DG21_B A 4 ? B 21 ? 19 1 1 A DT 5 1_555 B DA 8 1_555 0.008 -0.151 0.152 4.594 -6.428 0.116 5 A_DT5:DA20_B A 5 ? B 20 ? 20 1 1 A DG 6 1_555 B DC 7 1_555 -0.239 -0.261 0.220 14.133 -19.317 -0.363 6 A_DG6:DC19_B A 6 ? B 19 ? 19 1 1 A DG 7 1_555 B DC 6 1_555 -0.450 -0.174 0.040 -5.892 -16.505 3.173 7 A_DG7:DC18_B A 7 ? B 18 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.125 -0.054 0.041 -3.582 -17.897 -2.803 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.106 -0.176 0.134 -11.384 -12.187 -1.669 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 -0.068 -0.142 -0.001 -2.737 -7.611 -2.473 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 0.222 -0.069 -0.158 -0.760 -7.800 -1.936 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.417 -0.103 0.171 -6.556 -6.868 -1.754 12 A_DC12:DG13_B A 12 ? B 13 ? 19 1 1 C DC 1 1_555 D DG 12 1_555 0.219 -0.108 -0.280 8.644 -4.483 -1.373 13 C_DC25:DG48_D C 25 ? D 48 ? 19 1 1 C DC 2 1_555 D DG 11 1_555 0.283 -0.210 -0.058 1.645 -6.519 -0.872 14 C_DC26:DG47_D C 26 ? D 47 ? 19 1 1 C DT 3 1_555 D DA 10 1_555 0.068 -0.120 -0.104 0.214 -11.985 3.480 15 C_DT27:DA46_D C 27 ? D 46 ? 20 1 1 C DC 4 1_555 D DG 9 1_555 0.220 -0.137 0.079 -0.715 -9.123 1.374 16 C_DC28:DG45_D C 28 ? D 45 ? 19 1 1 C DT 5 1_555 D DA 8 1_555 0.007 -0.137 0.020 5.163 -6.190 0.314 17 C_DT29:DA44_D C 29 ? D 44 ? 20 1 1 C DG 6 1_555 D DC 7 1_555 -0.274 -0.281 0.252 15.555 -20.194 -2.469 18 C_DG30:DC43_D C 30 ? D 43 ? 19 1 1 C DG 7 1_555 D DC 6 1_555 -0.470 -0.124 0.018 -5.537 -16.593 3.930 19 C_DG31:DC42_D C 31 ? D 42 ? 19 1 1 C DT 8 1_555 D DA 5 1_555 -0.147 -0.070 0.045 -3.575 -18.806 -1.887 20 C_DT32:DA41_D C 32 ? D 41 ? 20 1 1 C DC 9 1_555 D DG 4 1_555 0.003 -0.284 0.131 -9.136 -13.273 -1.404 21 C_DC33:DG40_D C 33 ? D 40 ? 19 1 1 C DT 10 1_555 D DA 3 1_555 -0.323 -0.103 -0.026 0.574 -5.158 -1.407 22 C_DT34:DA39_D C 34 ? D 39 ? 20 1 1 C DC 11 1_555 D DG 2 1_555 0.428 -0.193 -0.028 -1.983 -8.227 -0.869 23 C_DC35:DG38_D C 35 ? D 38 ? 19 1 1 C DC 12 1_555 D DG 1 1_555 0.371 -0.211 0.110 -5.601 -5.178 -1.589 24 C_DC36:DG37_D C 36 ? D 37 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.887 -2.300 3.401 -2.592 3.109 29.877 -5.067 1.168 3.214 5.996 4.999 30.144 1 AA_DC1DC2:DG23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DT 3 1_555 B DA 10 1_555 0.001 -1.711 3.243 0.530 4.499 29.895 -4.150 0.101 2.959 8.659 -1.019 30.229 2 AA_DC2DT3:DA22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DT 3 1_555 B DA 10 1_555 A DC 4 1_555 B DG 9 1_555 -0.072 -1.575 3.334 -1.099 7.453 33.106 -3.857 -0.048 2.922 12.873 1.897 33.929 3 AA_DT3DC4:DG21DA22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DC 4 1_555 B DG 9 1_555 A DT 5 1_555 B DA 8 1_555 -0.325 -1.695 3.178 -1.065 3.683 28.218 -4.240 0.431 2.947 7.509 2.172 28.472 4 AA_DC4DT5:DA20DG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DT 5 1_555 B DA 8 1_555 A DG 6 1_555 B DC 7 1_555 -0.821 -1.382 3.078 -0.343 7.380 27.593 -4.297 1.597 2.637 15.131 0.703 28.546 5 AA_DT5DG6:DC19DA20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DG 6 1_555 B DC 7 1_555 A DG 7 1_555 B DC 6 1_555 1.343 -1.658 3.535 2.318 26.351 30.070 -5.249 -1.723 1.697 42.015 -3.696 39.847 6 AA_DG6DG7:DC18DC19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.646 -1.275 3.151 0.671 3.830 35.155 -2.630 1.157 2.987 6.317 -1.107 35.362 7 AA_DG7DT8:DA17DC18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.547 -0.463 3.347 4.706 3.024 39.219 -1.048 -0.241 3.344 4.477 -6.968 39.601 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 -0.406 -0.306 3.163 3.327 10.425 28.841 -2.502 1.378 2.821 20.043 -6.396 30.806 9 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DC 11 1_555 B DG 2 1_555 0.218 -0.291 3.193 2.741 1.312 36.101 -0.648 0.026 3.188 2.112 -4.413 36.225 10 AA_DT10DC11:DG14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DC 12 1_555 B DG 1 1_555 0.245 -0.342 3.386 -0.536 3.263 36.014 -1.024 -0.473 3.339 5.263 0.865 36.161 11 AA_DC11DC12:DG13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 C DC 1 1_555 D DG 12 1_555 C DC 2 1_555 D DG 11 1_555 -0.882 -2.323 3.497 -3.687 3.584 29.680 -5.236 0.910 3.284 6.931 7.130 30.112 12 CC_DC25DC26:DG47DG48_DD C 25 ? D 48 ? C 26 ? D 47 ? 1 C DC 2 1_555 D DG 11 1_555 C DT 3 1_555 D DA 10 1_555 -0.276 -1.842 3.308 0.610 5.066 27.356 -4.997 0.716 2.919 10.594 -1.276 27.819 13 CC_DC26DT27:DA46DG47_DD C 26 ? D 47 ? C 27 ? D 46 ? 1 C DT 3 1_555 D DA 10 1_555 C DC 4 1_555 D DG 9 1_555 0.139 -1.395 3.283 -1.380 6.313 33.460 -3.351 -0.449 2.970 10.839 2.369 34.061 14 CC_DT27DC28:DG45DA46_DD C 27 ? D 46 ? C 28 ? D 45 ? 1 C DC 4 1_555 D DG 9 1_555 C DT 5 1_555 D DA 8 1_555 -0.129 -1.705 3.207 0.592 4.195 29.588 -4.129 0.367 2.940 8.161 -1.151 29.883 15 CC_DC28DT29:DA44DG45_DD C 28 ? D 45 ? C 29 ? D 44 ? 1 C DT 5 1_555 D DA 8 1_555 C DG 6 1_555 D DC 7 1_555 -0.845 -1.503 3.104 -1.191 7.971 26.575 -4.843 1.507 2.587 16.854 2.518 27.750 16 CC_DT29DG30:DC43DA44_DD C 29 ? D 44 ? C 30 ? D 43 ? 1 C DG 6 1_555 D DC 7 1_555 C DG 7 1_555 D DC 6 1_555 1.492 -1.656 3.543 3.150 26.992 30.294 -5.210 -1.827 1.711 42.480 -4.957 40.483 17 CC_DG30DG31:DC42DC43_DD C 30 ? D 43 ? C 31 ? D 42 ? 1 C DG 7 1_555 D DC 6 1_555 C DT 8 1_555 D DA 5 1_555 -0.730 -1.210 3.157 0.130 3.655 34.535 -2.557 1.243 3.015 6.136 -0.219 34.722 18 CC_DG31DT32:DA41DC42_DD C 31 ? D 42 ? C 32 ? D 41 ? 1 C DT 8 1_555 D DA 5 1_555 C DC 9 1_555 D DG 4 1_555 0.446 -0.542 3.323 4.195 4.143 38.054 -1.344 -0.149 3.278 6.308 -6.386 38.492 19 CC_DT32DC33:DG40DA41_DD C 32 ? D 41 ? C 33 ? D 40 ? 1 C DC 9 1_555 D DG 4 1_555 C DT 10 1_555 D DA 3 1_555 -0.415 -0.355 3.133 2.982 9.140 28.158 -2.488 1.396 2.824 18.131 -5.916 29.723 20 CC_DC33DT34:DA39DG40_DD C 33 ? D 40 ? C 34 ? D 39 ? 1 C DT 10 1_555 D DA 3 1_555 C DC 11 1_555 D DG 2 1_555 0.324 -0.250 3.301 2.448 1.751 38.575 -0.594 -0.186 3.300 2.646 -3.699 38.688 21 CC_DT34DC35:DG38DA39_DD C 34 ? D 39 ? C 35 ? D 38 ? 1 C DC 11 1_555 D DG 2 1_555 C DC 12 1_555 D DG 1 1_555 0.259 -0.348 3.309 0.726 4.290 34.072 -1.265 -0.325 3.247 7.284 -1.233 34.341 22 CC_DC35DC36:DG37DG38_DD C 35 ? D 38 ? C 36 ? D 37 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 Cisplatin CPT 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AIO _pdbx_initial_refinement_model.details ? #