HEADER TRANSCRIPTION/INHIBITOR 08-FEB-10 3LQ5 TITLE STRUCTURE OF CDK9/CYCLINT IN COMPLEX WITH S-CR8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 2-330; COMPND 5 SYNONYM: CYCLIN-DEPENDENT KINASE 9, SERINE/THREONINE-PROTEIN KINASE COMPND 6 PITALRE, CELL DIVISION CYCLE 2-LIKE PROTEIN KINASE 4, C-2K; COMPND 7 EC: 2.7.11.22, 2.7.11.23; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYCLIN-T1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: CYCLIN DOMAIN, UNP RESIDUES 2-259; COMPND 13 SYNONYM: CYCLIN-T, CYCT1; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDC2L4, CDK9; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVL1392; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CCNT1; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PVL1392 KEYWDS TRANSCRIPTIONAL CDK-CYCLIN COMPLEX, PHOSPHORYLATED, ATP-BINDING, KEYWDS 2 KINASE, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 3 SERINE/THREONINE-PROTEIN KINASE, TRANSCRIPTION REGULATION, KEYWDS 4 TRANSFERASE, CELL CYCLE, CELL DIVISION, HOST-VIRUS INTERACTION, KEYWDS 5 TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.HOLE,J.A.ENDICOTT,S.BAUMLI REVDAT 3 01-NOV-23 3LQ5 1 REMARK SEQADV LINK REVDAT 2 25-APR-12 3LQ5 1 JRNL VERSN HEADER REMARK REVDAT 1 19-JAN-11 3LQ5 0 JRNL AUTH K.BETTAYEB,D.BAUNBAK,C.DELEHOUZE,N.LOAEC,A.J.HOLE,S.BAUMLI, JRNL AUTH 2 J.A.ENDICOTT,S.DOUC-RASY,J.BENARD,N.OUMATA,H.GALONS,L.MEIJER JRNL TITL CDK INHIBITORS ROSCOVITINE AND CR8 TRIGGER MCL-1 JRNL TITL 2 DOWN-REGULATION AND APOPTOTIC CELL DEATH IN NEUROBLASTOMA JRNL TITL 3 CELLS JRNL REF GENES CANCER V. 1 369 2010 JRNL REFN ISSN 1947-6019 JRNL PMID 21779453 JRNL DOI 10.1177/1947601910369817 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 21856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3461 - 5.9929 0.96 2536 137 0.1648 0.2183 REMARK 3 2 5.9929 - 4.7599 0.98 2578 141 0.1340 0.1687 REMARK 3 3 4.7599 - 4.1591 0.98 2603 130 0.1217 0.1716 REMARK 3 4 4.1591 - 3.7792 0.98 2608 140 0.1353 0.2108 REMARK 3 5 3.7792 - 3.5086 0.99 2564 157 0.1617 0.2053 REMARK 3 6 3.5086 - 3.3018 0.99 2652 122 0.1867 0.2504 REMARK 3 7 3.3018 - 3.1366 0.99 2605 143 0.2333 0.3013 REMARK 3 8 3.1366 - 3.0001 0.99 2615 125 0.2699 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 58.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 96.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.70800 REMARK 3 B22 (A**2) : -3.70800 REMARK 3 B33 (A**2) : 7.41700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4685 REMARK 3 ANGLE : 1.153 6350 REMARK 3 CHIRALITY : 0.072 708 REMARK 3 PLANARITY : 0.004 799 REMARK 3 DIHEDRAL : 19.508 1743 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 6:108) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6549 -11.2950 -20.1867 REMARK 3 T TENSOR REMARK 3 T11: 0.4093 T22: 0.6921 REMARK 3 T33: 0.5753 T12: 0.0964 REMARK 3 T13: 0.0319 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 1.4861 L22: 0.8282 REMARK 3 L33: 0.7751 L12: -0.0876 REMARK 3 L13: -0.4500 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.3139 S13: -0.3326 REMARK 3 S21: -0.1020 S22: -0.0529 S23: -0.2813 REMARK 3 S31: 0.2049 S32: 0.4950 S33: -0.0262 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 109:327) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9325 -20.5168 7.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.9176 T22: 0.5166 REMARK 3 T33: 0.7447 T12: -0.1617 REMARK 3 T13: -0.1511 T23: 0.1897 REMARK 3 L TENSOR REMARK 3 L11: 1.8297 L22: 1.2956 REMARK 3 L33: 2.1440 L12: -0.6541 REMARK 3 L13: -0.0332 L23: 0.4967 REMARK 3 S TENSOR REMARK 3 S11: 0.2761 S12: -0.2244 S13: -0.6398 REMARK 3 S21: 0.6779 S22: -0.2797 S23: 0.2605 REMARK 3 S31: 0.7780 S32: 0.0769 S33: -0.0245 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 21.3714 3.8531 -19.7671 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.4176 REMARK 3 T33: 0.4000 T12: -0.0418 REMARK 3 T13: -0.0778 T23: -0.1007 REMARK 3 L TENSOR REMARK 3 L11: 1.9199 L22: 1.4300 REMARK 3 L33: 1.9803 L12: -0.6328 REMARK 3 L13: -0.0530 L23: 0.6096 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: 0.1213 S13: 0.2915 REMARK 3 S21: 0.0082 S22: 0.0870 S23: -0.3528 REMARK 3 S31: -0.0915 S32: 0.1466 S33: -0.1181 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21867 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 7.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: PHENIX 1.5_2 REMARK 200 STARTING MODEL: PDB ENTRY 3BLH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 1000, 100MM NAK-PHOSPHATE PH REMARK 280 6.2, 500MM NACL, 4MM TCEP , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 86.62450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.01268 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.08033 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 86.62450 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 50.01268 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.08033 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 86.62450 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 50.01268 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.08033 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 100.02536 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.16067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 100.02536 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.16067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 100.02536 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.16067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 GLY A 28 REMARK 465 THR A 29 REMARK 465 ALA A 89 REMARK 465 SER A 90 REMARK 465 PRO A 91 REMARK 465 TYR A 92 REMARK 465 ASN A 93 REMARK 465 ARG A 94 REMARK 465 CYS A 95 REMARK 465 LYS A 96 REMARK 465 LYS A 178 REMARK 465 ASN A 179 REMARK 465 SER A 180 REMARK 465 GLN A 181 REMARK 465 LEU A 328 REMARK 465 SER A 329 REMARK 465 THR A 330 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 465 ASN B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 11 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 10 76.54 -156.16 REMARK 500 VAL A 16 -4.93 -57.60 REMARK 500 LEU A 22 -30.73 -131.44 REMARK 500 ALA A 23 143.47 -178.74 REMARK 500 ILE A 25 -16.40 -144.22 REMARK 500 HIS A 75 145.51 -170.13 REMARK 500 VAL A 79 150.72 -43.82 REMARK 500 ASP A 149 46.40 -146.78 REMARK 500 LYS A 151 143.51 -178.81 REMARK 500 ASP A 167 82.08 56.62 REMARK 500 ARG A 188 40.97 -72.40 REMARK 500 VAL A 190 121.96 76.36 REMARK 500 THR A 191 136.84 -35.30 REMARK 500 GLU A 198 -51.00 -25.82 REMARK 500 GLU A 221 -8.13 -52.42 REMARK 500 ARG A 225 0.76 51.74 REMARK 500 GLN A 237 -70.17 -54.42 REMARK 500 LEU A 238 -36.55 -38.76 REMARK 500 ASN A 255 17.10 84.82 REMARK 500 LYS A 264 29.33 -67.44 REMARK 500 LYS A 325 -10.30 -148.25 REMARK 500 ASP B 30 151.69 -49.67 REMARK 500 GLN B 97 58.76 -119.16 REMARK 500 HIS B 113 59.28 -151.17 REMARK 500 THR B 121 -6.12 -51.37 REMARK 500 ARG B 165 20.28 46.56 REMARK 500 ASN B 250 -19.57 65.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SLQ A 331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BLH RELATED DB: PDB REMARK 900 RELATED ID: 3BLQ RELATED DB: PDB REMARK 900 RELATED ID: 3BLR RELATED DB: PDB DBREF 3LQ5 A 2 330 UNP P50750 CDK9_HUMAN 2 330 DBREF 3LQ5 B 2 259 UNP O60563 CCNT1_HUMAN 2 259 SEQADV 3LQ5 GLY A 0 UNP P50750 EXPRESSION TAG SEQADV 3LQ5 PRO A 1 UNP P50750 EXPRESSION TAG SEQADV 3LQ5 GLY B 0 UNP O60563 EXPRESSION TAG SEQADV 3LQ5 PRO B 1 UNP O60563 EXPRESSION TAG SEQADV 3LQ5 ARG B 77 UNP O60563 GLN 77 ENGINEERED MUTATION SEQADV 3LQ5 GLY B 96 UNP O60563 GLU 96 ENGINEERED MUTATION SEQADV 3LQ5 LEU B 241 UNP O60563 PHE 241 ENGINEERED MUTATION SEQRES 1 A 331 GLY PRO ALA LYS GLN TYR ASP SER VAL GLU CYS PRO PHE SEQRES 2 A 331 CYS ASP GLU VAL SER LYS TYR GLU LYS LEU ALA LYS ILE SEQRES 3 A 331 GLY GLN GLY THR PHE GLY GLU VAL PHE LYS ALA ARG HIS SEQRES 4 A 331 ARG LYS THR GLY GLN LYS VAL ALA LEU LYS LYS VAL LEU SEQRES 5 A 331 MET GLU ASN GLU LYS GLU GLY PHE PRO ILE THR ALA LEU SEQRES 6 A 331 ARG GLU ILE LYS ILE LEU GLN LEU LEU LYS HIS GLU ASN SEQRES 7 A 331 VAL VAL ASN LEU ILE GLU ILE CYS ARG THR LYS ALA SER SEQRES 8 A 331 PRO TYR ASN ARG CYS LYS GLY SER ILE TYR LEU VAL PHE SEQRES 9 A 331 ASP PHE CYS GLU HIS ASP LEU ALA GLY LEU LEU SER ASN SEQRES 10 A 331 VAL LEU VAL LYS PHE THR LEU SER GLU ILE LYS ARG VAL SEQRES 11 A 331 MET GLN MET LEU LEU ASN GLY LEU TYR TYR ILE HIS ARG SEQRES 12 A 331 ASN LYS ILE LEU HIS ARG ASP MET LYS ALA ALA ASN VAL SEQRES 13 A 331 LEU ILE THR ARG ASP GLY VAL LEU LYS LEU ALA ASP PHE SEQRES 14 A 331 GLY LEU ALA ARG ALA PHE SER LEU ALA LYS ASN SER GLN SEQRES 15 A 331 PRO ASN ARG TYR TPO ASN ARG VAL VAL THR LEU TRP TYR SEQRES 16 A 331 ARG PRO PRO GLU LEU LEU LEU GLY GLU ARG ASP TYR GLY SEQRES 17 A 331 PRO PRO ILE ASP LEU TRP GLY ALA GLY CYS ILE MET ALA SEQRES 18 A 331 GLU MET TRP THR ARG SER PRO ILE MET GLN GLY ASN THR SEQRES 19 A 331 GLU GLN HIS GLN LEU ALA LEU ILE SER GLN LEU CYS GLY SEQRES 20 A 331 SER ILE THR PRO GLU VAL TRP PRO ASN VAL ASP ASN TYR SEQRES 21 A 331 GLU LEU TYR GLU LYS LEU GLU LEU VAL LYS GLY GLN LYS SEQRES 22 A 331 ARG LYS VAL LYS ASP ARG LEU LYS ALA TYR VAL ARG ASP SEQRES 23 A 331 PRO TYR ALA LEU ASP LEU ILE ASP LYS LEU LEU VAL LEU SEQRES 24 A 331 ASP PRO ALA GLN ARG ILE ASP SER ASP ASP ALA LEU ASN SEQRES 25 A 331 HIS ASP PHE PHE TRP SER ASP PRO MET PRO SER ASP LEU SEQRES 26 A 331 LYS GLY MET LEU SER THR SEQRES 1 B 260 GLY PRO GLU GLY GLU ARG LYS ASN ASN ASN LYS ARG TRP SEQRES 2 B 260 TYR PHE THR ARG GLU GLN LEU GLU ASN SER PRO SER ARG SEQRES 3 B 260 ARG PHE GLY VAL ASP PRO ASP LYS GLU LEU SER TYR ARG SEQRES 4 B 260 GLN GLN ALA ALA ASN LEU LEU GLN ASP MET GLY GLN ARG SEQRES 5 B 260 LEU ASN VAL SER GLN LEU THR ILE ASN THR ALA ILE VAL SEQRES 6 B 260 TYR MET HIS ARG PHE TYR MET ILE GLN SER PHE THR ARG SEQRES 7 B 260 PHE PRO GLY ASN SER VAL ALA PRO ALA ALA LEU PHE LEU SEQRES 8 B 260 ALA ALA LYS VAL GLU GLY GLN PRO LYS LYS LEU GLU HIS SEQRES 9 B 260 VAL ILE LYS VAL ALA HIS THR CYS LEU HIS PRO GLN GLU SEQRES 10 B 260 SER LEU PRO ASP THR ARG SER GLU ALA TYR LEU GLN GLN SEQRES 11 B 260 VAL GLN ASP LEU VAL ILE LEU GLU SER ILE ILE LEU GLN SEQRES 12 B 260 THR LEU GLY PHE GLU LEU THR ILE ASP HIS PRO HIS THR SEQRES 13 B 260 HIS VAL VAL LYS CYS THR GLN LEU VAL ARG ALA SER LYS SEQRES 14 B 260 ASP LEU ALA GLN THR SER TYR PHE MET ALA THR ASN SER SEQRES 15 B 260 LEU HIS LEU THR THR PHE SER LEU GLN TYR THR PRO PRO SEQRES 16 B 260 VAL VAL ALA CYS VAL CYS ILE HIS LEU ALA CYS LYS TRP SEQRES 17 B 260 SER ASN TRP GLU ILE PRO VAL SER THR ASP GLY LYS HIS SEQRES 18 B 260 TRP TRP GLU TYR VAL ASP ALA THR VAL THR LEU GLU LEU SEQRES 19 B 260 LEU ASP GLU LEU THR HIS GLU LEU LEU GLN ILE LEU GLU SEQRES 20 B 260 LYS THR PRO ASN ARG LEU LYS ARG ILE TRP ASN TRP ARG MODRES 3LQ5 TPO A 186 THR PHOSPHOTHREONINE HET TPO A 186 11 HET SLQ A 331 32 HETNAM TPO PHOSPHOTHREONINE HETNAM SLQ (2S)-2-({9-(1-METHYLETHYL)-6-[(4-PYRIDIN-2-YLBENZYL) HETNAM 2 SLQ AMINO]-9H-PURIN-2-YL}AMINO)BUTAN-1-OL HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 SLQ C24 H29 N7 O FORMUL 4 HOH *9(H2 O) HELIX 1 1 PRO A 60 LEU A 73 1 14 HELIX 2 2 LEU A 110 ASN A 116 1 7 HELIX 3 3 THR A 122 ASN A 143 1 22 HELIX 4 4 LYS A 151 ALA A 153 5 3 HELIX 5 5 THR A 191 ARG A 195 5 5 HELIX 6 6 PRO A 196 LEU A 201 1 6 HELIX 7 7 PRO A 208 ARG A 225 1 18 HELIX 8 8 THR A 233 CYS A 245 1 13 HELIX 9 9 ASN A 255 TYR A 259 5 5 HELIX 10 10 LYS A 274 LYS A 280 1 7 HELIX 11 11 ASP A 285 LEU A 296 1 12 HELIX 12 12 ASP A 299 ARG A 303 5 5 HELIX 13 13 ASP A 305 ASN A 311 1 7 HELIX 14 14 THR B 15 ASN B 21 1 7 HELIX 15 15 SER B 24 GLY B 28 5 5 HELIX 16 16 ASP B 30 LEU B 52 1 23 HELIX 17 17 SER B 55 TYR B 70 1 16 HELIX 18 18 PRO B 79 GLU B 95 1 17 HELIX 19 19 LYS B 100 HIS B 113 1 14 HELIX 20 20 SER B 123 LEU B 144 1 22 HELIX 21 21 HIS B 152 LEU B 163 1 12 HELIX 22 22 SER B 167 THR B 185 1 19 HELIX 23 23 THR B 186 GLN B 190 5 5 HELIX 24 24 THR B 192 SER B 208 1 17 HELIX 25 25 TRP B 221 VAL B 225 5 5 HELIX 26 26 THR B 230 THR B 248 1 19 HELIX 27 27 ARG B 251 TRP B 256 5 6 SHEET 1 A 6 ASP A 14 GLU A 15 0 SHEET 2 A 6 LEU A 81 ARG A 86 1 O ARG A 86 N ASP A 14 SHEET 3 A 6 ILE A 99 ASP A 104 -1 O TYR A 100 N CYS A 85 SHEET 4 A 6 LYS A 44 VAL A 50 -1 N LYS A 48 O LEU A 101 SHEET 5 A 6 VAL A 33 HIS A 38 -1 N ALA A 36 O VAL A 45 SHEET 6 A 6 TYR A 19 GLY A 26 -1 N ALA A 23 O LYS A 35 SHEET 1 B 3 HIS A 108 ASP A 109 0 SHEET 2 B 3 VAL A 155 ILE A 157 -1 O ILE A 157 N HIS A 108 SHEET 3 B 3 LEU A 163 LEU A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 C 2 ILE A 145 LEU A 146 0 SHEET 2 C 2 ARG A 172 ALA A 173 -1 O ARG A 172 N LEU A 146 LINK C TYR A 185 N TPO A 186 1555 1555 1.33 LINK C TPO A 186 N ASN A 187 1555 1555 1.33 CISPEP 1 GLY A 26 GLN A 27 0 -0.43 CISPEP 2 PHE A 30 GLY A 31 0 -0.07 CISPEP 3 ASP A 318 PRO A 319 0 -3.28 SITE 1 AC1 12 ILE A 25 ALA A 46 VAL A 79 PHE A 103 SITE 2 AC1 12 ASP A 104 PHE A 105 CYS A 106 GLU A 107 SITE 3 AC1 12 HIS A 108 ASN A 154 LEU A 156 ASP A 167 CRYST1 173.249 173.249 99.241 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005772 0.003332 0.000000 0.00000 SCALE2 0.000000 0.006665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010076 0.00000