HEADER VIRAL PROTEIN 08-FEB-10 3LQ6 TITLE CRYSTAL STRUCTURE OF MURINE NOROVIRUS PROTRUDING (P) DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTRUDING (P) DOMAIN, RESIDUES 228-540; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE NOROVIRUS 1; SOURCE 3 ORGANISM_TAXID: 223997; SOURCE 4 STRAIN: MNV-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS VIRAL CAPSID PROTEIN, PROTRUDING (P) DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.RUBIN,J.A.STUCKEY REVDAT 3 06-SEP-23 3LQ6 1 REMARK REVDAT 2 19-MAY-10 3LQ6 1 JRNL REVDAT 1 21-APR-10 3LQ6 0 JRNL AUTH S.TAUBE,J.R.RUBIN,U.KATPALLY,T.J.SMITH,A.KENDALL, JRNL AUTH 2 J.A.STUCKEY,C.E.WOBUS JRNL TITL HIGH-RESOLUTION X-RAY STRUCTURE AND FUNCTIONAL ANALYSIS OF JRNL TITL 2 THE MURINE NOROVIRUS 1 CAPSID PROTEIN PROTRUDING DOMAIN. JRNL REF J.VIROL. V. 84 5695 2010 JRNL REFN ISSN 0022-538X JRNL PMID 20335262 JRNL DOI 10.1128/JVI.00316-10 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 48254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3455 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4932 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6750 ; 1.833 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 624 ; 7.859 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;35.481 ;23.619 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;15.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;21.107 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 764 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3822 ; 0.010 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3122 ; 1.376 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5050 ; 2.316 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1810 ; 3.231 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1700 ; 5.014 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49163 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M SODIUM ACETATE, 90 REMARK 280 MM GLYCINE, 10 MM SODIUM CHLORIDE, 10 MM TRIS, 0.5 MM REMARK 280 DITHIOTHREITOL, , PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.16300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 222 REMARK 465 ASN A 223 REMARK 465 ALA A 224 REMARK 465 THR A 225 REMARK 465 ILE A 226 REMARK 465 TYR A 227 REMARK 465 GLN A 541 REMARK 465 SER B 222 REMARK 465 ASN B 223 REMARK 465 ALA B 224 REMARK 465 THR B 225 REMARK 465 ILE B 226 REMARK 465 TYR B 227 REMARK 465 GLN B 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 364 OD1 ASP A 410 1.38 REMARK 500 CG2 ILE B 358 OG1 THR B 362 2.06 REMARK 500 CG2 ILE B 358 CB THR B 362 2.09 REMARK 500 OD2 ASP A 366 NH2 ARG A 373 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 480 NZ LYS B 540 2655 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 255 CB - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 GLU A 303 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP B 255 CB - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 ASN B 364 N - CA - CB ANGL. DEV. = 16.7 DEGREES REMARK 500 ALA B 365 CB - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 321 44.94 -102.62 REMARK 500 THR A 362 57.84 39.19 REMARK 500 THR A 363 -118.80 62.03 REMARK 500 ASP A 366 48.66 74.63 REMARK 500 LEU A 384 -4.70 77.36 REMARK 500 ASP A 410 -126.72 54.18 REMARK 500 ASP B 321 45.25 -104.84 REMARK 500 THR B 363 -127.12 63.31 REMARK 500 ASP B 366 60.17 -107.46 REMARK 500 ASP B 410 -137.62 53.95 REMARK 500 SER B 470 -124.68 57.87 REMARK 500 GLU B 471 12.32 -154.26 REMARK 500 ALA B 472 162.64 173.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 385 LEU B 386 -149.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LQE RELATED DB: PDB DBREF 3LQ6 A 228 540 UNP Q2V8W4 Q2V8W4_9CALI 228 540 DBREF 3LQ6 B 228 540 UNP Q2V8W4 Q2V8W4_9CALI 228 540 SEQRES 1 A 320 SER ASN ALA THR ILE TYR ARG MET VAL ASP LEU PRO VAL SEQRES 2 A 320 ILE GLN PRO ARG LEU CYS THR HIS ALA ARG TRP PRO ALA SEQRES 3 A 320 PRO VAL TYR GLY LEU LEU VAL ASP PRO SER LEU PRO SER SEQRES 4 A 320 ASN PRO GLN TRP GLN ASN GLY ARG VAL HIS VAL ASP GLY SEQRES 5 A 320 THR LEU LEU GLY THR THR PRO ILE SER GLY SER TRP VAL SEQRES 6 A 320 SER CYS PHE ALA ALA GLU ALA ALA TYR GLU PHE GLN SER SEQRES 7 A 320 GLY THR GLY GLU VAL ALA THR PHE THR LEU ILE GLU GLN SEQRES 8 A 320 ASP GLY SER ALA TYR VAL PRO GLY ASP ARG ALA ALA PRO SEQRES 9 A 320 LEU GLY TYR PRO ASP PHE SER GLY GLN LEU GLU ILE GLU SEQRES 10 A 320 VAL GLN THR GLU THR THR LYS THR GLY ASP LYS LEU LYS SEQRES 11 A 320 VAL THR THR PHE GLU MET ILE LEU GLY PRO THR THR ASN SEQRES 12 A 320 ALA ASP GLN ALA PRO TYR GLN GLY ARG VAL PHE ALA SER SEQRES 13 A 320 VAL THR ALA ALA ALA SER LEU ASP LEU VAL ASP GLY ARG SEQRES 14 A 320 VAL ARG ALA VAL PRO ARG SER ILE TYR GLY PHE GLN ASP SEQRES 15 A 320 THR ILE PRO GLU TYR ASN ASP GLY LEU LEU VAL PRO LEU SEQRES 16 A 320 ALA PRO PRO ILE GLY PRO PHE LEU PRO GLY GLU VAL LEU SEQRES 17 A 320 LEU ARG PHE ARG THR TYR MET ARG GLN ILE ASP THR ALA SEQRES 18 A 320 ASP ALA ALA ALA GLU ALA ILE ASP CYS ALA LEU PRO GLN SEQRES 19 A 320 GLU PHE VAL SER TRP PHE ALA SER ASN ALA PHE THR VAL SEQRES 20 A 320 GLN SER GLU ALA LEU LEU LEU ARG TYR ARG ASN THR LEU SEQRES 21 A 320 THR GLY GLN LEU LEU PHE GLU CYS LYS LEU TYR ASN GLU SEQRES 22 A 320 GLY TYR ILE ALA LEU SER TYR SER GLY SER GLY PRO LEU SEQRES 23 A 320 THR PHE PRO THR ASP GLY ILE PHE GLU VAL VAL SER TRP SEQRES 24 A 320 VAL PRO ARG LEU TYR GLN LEU ALA SER VAL GLY SER LEU SEQRES 25 A 320 ALA THR GLY ARG MET LEU LYS GLN SEQRES 1 B 320 SER ASN ALA THR ILE TYR ARG MET VAL ASP LEU PRO VAL SEQRES 2 B 320 ILE GLN PRO ARG LEU CYS THR HIS ALA ARG TRP PRO ALA SEQRES 3 B 320 PRO VAL TYR GLY LEU LEU VAL ASP PRO SER LEU PRO SER SEQRES 4 B 320 ASN PRO GLN TRP GLN ASN GLY ARG VAL HIS VAL ASP GLY SEQRES 5 B 320 THR LEU LEU GLY THR THR PRO ILE SER GLY SER TRP VAL SEQRES 6 B 320 SER CYS PHE ALA ALA GLU ALA ALA TYR GLU PHE GLN SER SEQRES 7 B 320 GLY THR GLY GLU VAL ALA THR PHE THR LEU ILE GLU GLN SEQRES 8 B 320 ASP GLY SER ALA TYR VAL PRO GLY ASP ARG ALA ALA PRO SEQRES 9 B 320 LEU GLY TYR PRO ASP PHE SER GLY GLN LEU GLU ILE GLU SEQRES 10 B 320 VAL GLN THR GLU THR THR LYS THR GLY ASP LYS LEU LYS SEQRES 11 B 320 VAL THR THR PHE GLU MET ILE LEU GLY PRO THR THR ASN SEQRES 12 B 320 ALA ASP GLN ALA PRO TYR GLN GLY ARG VAL PHE ALA SER SEQRES 13 B 320 VAL THR ALA ALA ALA SER LEU ASP LEU VAL ASP GLY ARG SEQRES 14 B 320 VAL ARG ALA VAL PRO ARG SER ILE TYR GLY PHE GLN ASP SEQRES 15 B 320 THR ILE PRO GLU TYR ASN ASP GLY LEU LEU VAL PRO LEU SEQRES 16 B 320 ALA PRO PRO ILE GLY PRO PHE LEU PRO GLY GLU VAL LEU SEQRES 17 B 320 LEU ARG PHE ARG THR TYR MET ARG GLN ILE ASP THR ALA SEQRES 18 B 320 ASP ALA ALA ALA GLU ALA ILE ASP CYS ALA LEU PRO GLN SEQRES 19 B 320 GLU PHE VAL SER TRP PHE ALA SER ASN ALA PHE THR VAL SEQRES 20 B 320 GLN SER GLU ALA LEU LEU LEU ARG TYR ARG ASN THR LEU SEQRES 21 B 320 THR GLY GLN LEU LEU PHE GLU CYS LYS LEU TYR ASN GLU SEQRES 22 B 320 GLY TYR ILE ALA LEU SER TYR SER GLY SER GLY PRO LEU SEQRES 23 B 320 THR PHE PRO THR ASP GLY ILE PHE GLU VAL VAL SER TRP SEQRES 24 B 320 VAL PRO ARG LEU TYR GLN LEU ALA SER VAL GLY SER LEU SEQRES 25 B 320 ALA THR GLY ARG MET LEU LYS GLN FORMUL 3 HOH *256(H2 O) HELIX 1 1 GLN A 236 CYS A 240 5 5 HELIX 2 2 SER A 282 VAL A 286 5 5 HELIX 3 3 PRO A 454 ALA A 465 1 12 HELIX 4 4 GLN B 236 CYS B 240 5 5 HELIX 5 5 SER B 282 VAL B 286 5 5 HELIX 6 6 PRO B 454 ALA B 465 1 12 SHEET 1 A 4 ASP A 443 CYS A 451 0 SHEET 2 A 4 ARG A 431 ASP A 440 -1 N MET A 436 O GLU A 447 SHEET 3 A 4 GLY A 251 VAL A 254 -1 N LEU A 253 O ARG A 431 SHEET 4 A 4 LEU A 507 THR A 508 -1 O LEU A 507 N VAL A 254 SHEET 1 B 7 PHE A 289 TYR A 295 0 SHEET 2 B 7 ALA A 305 ILE A 310 -1 O THR A 306 N ALA A 294 SHEET 3 B 7 ARG A 373 ALA A 381 -1 O VAL A 374 N PHE A 307 SHEET 4 B 7 VAL A 352 ILE A 358 -1 N THR A 354 O ALA A 380 SHEET 5 B 7 SER A 332 THR A 341 -1 N LEU A 335 O MET A 357 SHEET 6 B 7 GLY A 389 GLN A 402 -1 O VAL A 394 N GLU A 338 SHEET 7 B 7 PHE A 289 TYR A 295 -1 N ALA A 293 O GLY A 389 SHEET 1 C 5 GLU A 427 LEU A 429 0 SHEET 2 C 5 TYR A 496 SER A 500 -1 O LEU A 499 N VAL A 428 SHEET 3 C 5 LEU A 485 TYR A 492 -1 N TYR A 492 O TYR A 496 SHEET 4 C 5 ALA A 472 ARG A 478 -1 N LEU A 473 O LEU A 491 SHEET 5 C 5 ILE A 514 VAL A 521 -1 O VAL A 518 N LEU A 474 SHEET 1 D 4 ASP B 443 CYS B 451 0 SHEET 2 D 4 ARG B 431 ASP B 440 -1 N MET B 436 O GLU B 447 SHEET 3 D 4 GLY B 251 VAL B 254 -1 N GLY B 251 O ARG B 433 SHEET 4 D 4 LEU B 507 PHE B 509 -1 O PHE B 509 N LEU B 252 SHEET 1 E 7 PHE B 289 GLN B 298 0 SHEET 2 E 7 GLY B 302 ILE B 310 -1 O THR B 306 N ALA B 294 SHEET 3 E 7 ARG B 373 VAL B 378 -1 O VAL B 374 N PHE B 307 SHEET 4 E 7 VAL B 352 ILE B 358 -1 N GLU B 356 O SER B 377 SHEET 5 E 7 SER B 332 THR B 341 -1 N VAL B 339 O THR B 353 SHEET 6 E 7 GLY B 389 GLN B 402 -1 O ARG B 396 N GLU B 336 SHEET 7 E 7 PHE B 289 GLN B 298 -1 N PHE B 289 O ALA B 393 SHEET 1 F 5 GLU B 427 LEU B 429 0 SHEET 2 F 5 TYR B 496 SER B 500 -1 O LEU B 499 N VAL B 428 SHEET 3 F 5 LEU B 485 TYR B 492 -1 N LYS B 490 O ALA B 498 SHEET 4 F 5 LEU B 473 ARG B 478 -1 N LEU B 473 O LEU B 491 SHEET 5 F 5 ILE B 514 TRP B 520 -1 O SER B 519 N LEU B 474 CISPEP 1 GLY A 421 PRO A 422 0 2.97 CISPEP 2 GLY B 421 PRO B 422 0 -0.75 CRYST1 57.800 86.326 83.543 90.00 110.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017301 0.000000 0.006614 0.00000 SCALE2 0.000000 0.011584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012815 0.00000