HEADER IMMUNE SYSTEM 08-FEB-10 3LQA TITLE CRYSTAL STRUCTURE OF CLADE C GP120 IN COMPLEX WITH SCD4 AND 21C FAB CAVEAT 3LQA NAG G 2500 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD4; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 7 CHAIN: G; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HEAVY CHAIN OF ANTI HIV FAB FROM HUMAN 21C ANTIBODY; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: LIGHT CHAIN OF ANTI HIV FAB FROM HUMAN 21C ANTIBODY; COMPND 16 CHAIN: L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: CD4; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PACGP67B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HIV-1; SOURCE 11 ORGANISM_TAXID: 11676; SOURCE 12 GENE: ENV; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PACGP67B; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS COMPLEX, POLY REACTIVITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.DISKIN,P.M.MARCOVECCHIO,P.J.BJORKMAN REVDAT 7 30-OCT-24 3LQA 1 REMARK REVDAT 6 13-OCT-21 3LQA 1 SEQADV HETSYN REVDAT 5 29-JUL-20 3LQA 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HETNAM LINK SITE REVDAT 4 01-NOV-17 3LQA 1 REMARK REVDAT 3 23-AUG-17 3LQA 1 SOURCE REVDAT 2 26-MAY-10 3LQA 1 JRNL REVDAT 1 07-APR-10 3LQA 0 JRNL AUTH R.DISKIN,P.M.MARCOVECCHIO,P.J.BJORKMAN JRNL TITL STRUCTURE OF A CLADE C HIV-1 GP120 BOUND TO CD4 AND JRNL TITL 2 CD4-INDUCED ANTIBODY REVEALS ANTI-CD4 POLYREACTIVITY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 608 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20357769 JRNL DOI 10.1038/NSMB.1796 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 79.6 REMARK 3 NUMBER OF REFLECTIONS : 14967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5%, REDUCED TO 0.5% REMARK 3 FOR FINAL ROUNDS OF REMARK 3 REFINEMENT. R VALUES WERE REMARK 3 RECORDED BEFORE THE FINAL REMARK 3 REFINEMENT ROUNDS. REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 40.000 REMARK 3 FREE R VALUE TEST SET COUNT : 83 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -1.10700 REMARK 3 B33 (A**2) : 1.52700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.024 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 75.54 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : CNS_TOPPAR:CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : FLAT MIRROR, DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR, VERTICAL AND REMARK 200 HORIZONTAL FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14975 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 84.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.70500 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE DIFFRACTION PATTERN FROM THE CRYSTALS WAS VERY REMARK 200 ANISOTROPIC. THERE IS 80% COMPLETENESS TO 3.4A BECAUSE REMARK 200 THE CRYSTALS DIFFRACTED TO ONLY 3.9A IN THE 'B' DIRECTION. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG MONOMETHYL ETHER 2000, REMARK 280 5% (V/V) PEG 200, 0.2 M TRIMETHYLAMINE N-OXIDE, 0.1 M TRIS-HCL REMARK 280 PH 8.5 , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.86500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.96500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.86500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.96500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.83500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.86500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.96500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.83500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.86500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.96500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 1 REMARK 465 LEU C 177 REMARK 465 ALA C 178 REMARK 465 PHE C 179 REMARK 465 GLN C 180 REMARK 465 LYS C 181 REMARK 465 ALA C 182 REMARK 465 ILE C 183 REMARK 465 ASP C 184 REMARK 465 GLY C 185 REMARK 465 ARG C 186 REMARK 465 HIS C 187 REMARK 465 HIS C 188 REMARK 465 HIS C 189 REMARK 465 HIS C 190 REMARK 465 HIS C 191 REMARK 465 HIS C 192 REMARK 465 GLU G 82 REMARK 465 ILE G 83 REMARK 465 VAL G 84 REMARK 465 LEU G 185 REMARK 465 CYS G 186 REMARK 465 VAL G 187 REMARK 465 GLY G 188 REMARK 465 ALA G 189 REMARK 465 GLY G 190 REMARK 465 ASN G 191 REMARK 465 CYS G 192 REMARK 465 ALA G 323 REMARK 465 THR G 392 REMARK 465 ASP G 393 REMARK 465 SER G 394 REMARK 465 THR G 395 REMARK 465 VAL G 396 REMARK 465 ASN G 397 REMARK 465 SER G 398 REMARK 465 THR G 399 REMARK 465 ASP G 400 REMARK 465 SER G 401 REMARK 465 THR G 402 REMARK 465 ALA G 403 REMARK 465 GLU G 404 REMARK 465 THR G 405 REMARK 465 GLY G 406 REMARK 465 ASN G 407 REMARK 465 SER G 408 REMARK 465 THR G 409 REMARK 465 ASN G 410 REMARK 465 THR G 411 REMARK 465 ASN G 412 REMARK 465 LYS G 494 REMARK 465 SER G 495 REMARK 465 GLY G 496 REMARK 465 HIS G 497 REMARK 465 HIS G 498 REMARK 465 HIS G 499 REMARK 465 HIS G 500 REMARK 465 HIS G 501 REMARK 465 HIS G 502 REMARK 465 LYS H 226 REMARK 465 SER H 227 REMARK 465 CYS H 228 REMARK 465 ASP H 229 REMARK 465 LYS H 230 REMARK 465 THR H 231 REMARK 465 GLN L 2 REMARK 465 GLU L 216 REMARK 465 CYS L 217 REMARK 465 SER L 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLU H 160 CD PRO H 161 1.78 REMARK 500 O LEU C 51 O ASP C 53 2.05 REMARK 500 O ASN H 104 OG1 THR H 107 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN G 258 CA ASN G 258 CB 0.174 REMARK 500 ASN G 258 CB ASN G 258 CG 0.281 REMARK 500 ASN G 272 CB ASN G 272 CG 0.184 REMARK 500 ASN G 441 CB ASN G 441 CG 0.160 REMARK 500 VAL H 4 CB VAL H 4 CG2 -0.128 REMARK 500 TRP H 115 CB TRP H 115 CG -0.114 REMARK 500 TRP L 37 CB TRP L 37 CG -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS C 35 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG C 59 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 GLN C 110 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 VAL C 146 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ILE C 174 N - CA - C ANGL. DEV. = 19.0 DEGREES REMARK 500 SER G 114 N - CA - C ANGL. DEV. = 18.7 DEGREES REMARK 500 CYS G 201 CA - CB - SG ANGL. DEV. = 11.1 DEGREES REMARK 500 PRO G 208 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO G 208 C - N - CD ANGL. DEV. = -22.4 DEGREES REMARK 500 TYR G 213 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 VAL G 251 N - CA - C ANGL. DEV. = -21.7 DEGREES REMARK 500 GLU G 263 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 ASN G 275 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 ASN G 276 N - CA - CB ANGL. DEV. = -18.3 DEGREES REMARK 500 VAL G 277 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 LYS G 278 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 LEU G 284 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 CYS G 292 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 LYS G 343 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 ASN G 380 N - CA - C ANGL. DEV. = -21.6 DEGREES REMARK 500 HIS G 389 N - CA - C ANGL. DEV. = 23.4 DEGREES REMARK 500 ASN G 390 N - CA - C ANGL. DEV. = 20.6 DEGREES REMARK 500 CYS G 417 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 PRO G 437 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO G 437 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 PRO G 437 N - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 ASN G 441 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 THR G 467 N - CA - C ANGL. DEV. = 22.9 DEGREES REMARK 500 PRO G 472 C - N - CA ANGL. DEV. = -9.5 DEGREES REMARK 500 ASP G 476 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 LEU H 29 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 LEU H 29 CB - CG - CD1 ANGL. DEV. = -11.7 DEGREES REMARK 500 PRO H 41 C - N - CA ANGL. DEV. = -11.3 DEGREES REMARK 500 ILE H 58 N - CA - C ANGL. DEV. = -40.5 DEGREES REMARK 500 GLN H 65 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 GLN H 65 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG H 67 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 SER H 75 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 LEU H 105 CB - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 LEU H 105 CA - CB - CG ANGL. DEV. = 21.3 DEGREES REMARK 500 LEU H 105 CB - CG - CD1 ANGL. DEV. = 13.1 DEGREES REMARK 500 LEU H 105 CB - CG - CD2 ANGL. DEV. = -12.8 DEGREES REMARK 500 TYR H 109 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 PRO H 159 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO H 159 C - N - CD ANGL. DEV. = -39.8 DEGREES REMARK 500 PRO H 159 CA - N - CD ANGL. DEV. = -9.3 DEGREES REMARK 500 PRO H 161 C - N - CA ANGL. DEV. = 36.5 DEGREES REMARK 500 PRO H 161 C - N - CD ANGL. DEV. = -50.8 DEGREES REMARK 500 PRO H 214 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO L 8 C - N - CA ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 62 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 48 27.86 -67.11 REMARK 500 ASN C 52 -54.99 -14.58 REMARK 500 GLU C 87 50.02 39.96 REMARK 500 PRO C 122 129.59 -38.81 REMARK 500 PRO G 208 69.51 1.81 REMARK 500 PRO G 216 -139.62 -55.83 REMARK 500 GLN G 254 -14.10 39.98 REMARK 500 ASN G 386 18.64 -140.06 REMARK 500 ASN G 460 -128.18 120.02 REMARK 500 THR G 462 31.27 29.91 REMARK 500 PRO G 472 -173.76 -61.17 REMARK 500 PRO H 53 -0.56 -57.34 REMARK 500 THR H 107 -38.01 54.01 REMARK 500 PRO H 159 107.39 44.84 REMARK 500 PRO H 161 106.75 169.32 REMARK 500 ASN L 29 -79.81 -92.70 REMARK 500 PRO L 42 97.86 -39.35 REMARK 500 ASP L 53 -60.74 69.89 REMARK 500 ALA L 86 -169.85 170.02 REMARK 500 LEU L 97 -160.01 50.01 REMARK 500 THR L 99 -19.99 -40.00 REMARK 500 PRO L 170 147.95 -33.86 REMARK 500 PRO L 188 -7.37 -59.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER L 98 THR L 99 -148.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR H 94 0.07 SIDE CHAIN REMARK 500 TYR H 102 0.12 SIDE CHAIN REMARK 500 TYR H 110 0.08 SIDE CHAIN REMARK 500 TYR H 114 0.09 SIDE CHAIN REMARK 500 TYR L 34 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER L 98 -10.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LMJ RELATED DB: PDB REMARK 900 21C FAB UNBOUND DBREF 3LQA C 1 182 UNP P01730 CD4_HUMAN 26 207 DBREF 3LQA G 82 293 UNP Q1PHM6 Q1PHM6_9HIV1 82 232 DBREF 3LQA G 325 494 UNP Q1PHM6 Q1PHM6_9HIV1 325 494 DBREF 3LQA H 1 231 PDB 3LQA 3LQA 1 231 DBREF 3LQA L 2 218 PDB 3LQA 3LQA 2 218 SEQADV 3LQA ILE C 183 UNP P01730 EXPRESSION TAG SEQADV 3LQA ASP C 184 UNP P01730 EXPRESSION TAG SEQADV 3LQA GLY C 185 UNP P01730 EXPRESSION TAG SEQADV 3LQA ARG C 186 UNP P01730 EXPRESSION TAG SEQADV 3LQA HIS C 187 UNP P01730 EXPRESSION TAG SEQADV 3LQA HIS C 188 UNP P01730 EXPRESSION TAG SEQADV 3LQA HIS C 189 UNP P01730 EXPRESSION TAG SEQADV 3LQA HIS C 190 UNP P01730 EXPRESSION TAG SEQADV 3LQA HIS C 191 UNP P01730 EXPRESSION TAG SEQADV 3LQA HIS C 192 UNP P01730 EXPRESSION TAG SEQADV 3LQA GLY G 294 UNP Q1PHM6 LINKER SEQADV 3LQA ALA G 323 UNP Q1PHM6 LINKER SEQADV 3LQA GLY G 324 UNP Q1PHM6 LINKER SEQADV 3LQA ILE G 89 UNP Q1PHM6 THR 89 ENGINEERED MUTATION SEQADV 3LQA ASP G 226 UNP Q1PHM6 ASN 226 ENGINEERED MUTATION SEQADV 3LQA ILE G 232 UNP Q1PHM6 THR 232 ENGINEERED MUTATION SEQADV 3LQA THR G 285 UNP Q1PHM6 ASN 285 ENGINEERED MUTATION SEQADV 3LQA ASN G 329 UNP Q1PHM6 SER 329 ENGINEERED MUTATION SEQADV 3LQA ILE G 388 UNP Q1PHM6 THR 388 ENGINEERED MUTATION SEQADV 3LQA ASP G 447 UNP Q1PHM6 ASN 447 ENGINEERED MUTATION SEQADV 3LQA SER G 495 UNP Q1PHM6 EXPRESSION TAG SEQADV 3LQA GLY G 496 UNP Q1PHM6 EXPRESSION TAG SEQADV 3LQA HIS G 497 UNP Q1PHM6 EXPRESSION TAG SEQADV 3LQA HIS G 498 UNP Q1PHM6 EXPRESSION TAG SEQADV 3LQA HIS G 499 UNP Q1PHM6 EXPRESSION TAG SEQADV 3LQA HIS G 500 UNP Q1PHM6 EXPRESSION TAG SEQADV 3LQA HIS G 501 UNP Q1PHM6 EXPRESSION TAG SEQADV 3LQA HIS G 502 UNP Q1PHM6 EXPRESSION TAG SEQRES 1 C 192 LYS LYS VAL VAL LEU GLY LYS LYS GLY ASP THR VAL GLU SEQRES 2 C 192 LEU THR CYS THR ALA SER GLN LYS LYS SER ILE GLN PHE SEQRES 3 C 192 HIS TRP LYS ASN SER ASN GLN ILE LYS ILE LEU GLY ASN SEQRES 4 C 192 GLN GLY SER PHE LEU THR LYS GLY PRO SER LYS LEU ASN SEQRES 5 C 192 ASP ARG ALA ASP SER ARG ARG SER LEU TRP ASP GLN GLY SEQRES 6 C 192 ASN PHE PRO LEU ILE ILE LYS ASN LEU LYS ILE GLU ASP SEQRES 7 C 192 SER ASP THR TYR ILE CYS GLU VAL GLU ASP GLN LYS GLU SEQRES 8 C 192 GLU VAL GLN LEU LEU VAL PHE GLY LEU THR ALA ASN SER SEQRES 9 C 192 ASP THR HIS LEU LEU GLN GLY GLN SER LEU THR LEU THR SEQRES 10 C 192 LEU GLU SER PRO PRO GLY SER SER PRO SER VAL GLN CYS SEQRES 11 C 192 ARG SER PRO ARG GLY LYS ASN ILE GLN GLY GLY LYS THR SEQRES 12 C 192 LEU SER VAL SER GLN LEU GLU LEU GLN ASP SER GLY THR SEQRES 13 C 192 TRP THR CYS THR VAL LEU GLN ASN GLN LYS LYS VAL GLU SEQRES 14 C 192 PHE LYS ILE ASP ILE VAL VAL LEU ALA PHE GLN LYS ALA SEQRES 15 C 192 ILE ASP GLY ARG HIS HIS HIS HIS HIS HIS SEQRES 1 G 332 GLU ILE VAL LEU GLU ASN VAL ILE GLU ASN PHE ASN MET SEQRES 2 G 332 TRP LYS ASN ASP MET VAL ASP GLN MET HIS GLN ASP ILE SEQRES 3 G 332 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 4 G 332 LEU THR PRO LEU CYS VAL GLY ALA GLY ASN CYS ASN THR SEQRES 5 G 332 SER THR ILE ALA GLN ALA CYS PRO LYS VAL SER PHE ASP SEQRES 6 G 332 PRO ILE PRO ILE HIS TYR CYS ALA PRO ALA GLY TYR ALA SEQRES 7 G 332 ILE LEU LYS CYS ASN ASP LYS THR PHE ASN GLY ILE GLY SEQRES 8 G 332 PRO CYS ASN ASN VAL SER THR VAL GLN CYS THR HIS GLY SEQRES 9 G 332 ILE LYS PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SEQRES 10 G 332 SER LEU ALA GLU GLU GLU VAL VAL ILE ARG SER GLU ASN SEQRES 11 G 332 ILE SER ASN ASN VAL LYS THR ILE ILE VAL HIS LEU THR SEQRES 12 G 332 GLU SER VAL ASN ILE THR CYS ILE GLY ALA GLY HIS CYS SEQRES 13 G 332 ASN ILE ASN GLU LYS ALA TRP ASN GLU THR LEU LYS LYS SEQRES 14 G 332 VAL VAL GLU LYS LEU VAL LYS TYR PHE PRO ASN LYS THR SEQRES 15 G 332 ILE GLU PHE ALA PRO PRO VAL GLY GLY ASP LEU GLU ILE SEQRES 16 G 332 THR THR HIS SER PHE ASN CYS GLY GLY GLU PHE PHE TYR SEQRES 17 G 332 CYS ASN THR THR LYS LEU PHE ASN SER ILE HIS ASN SER SEQRES 18 G 332 THR ASP SER THR VAL ASN SER THR ASP SER THR ALA GLU SEQRES 19 G 332 THR GLY ASN SER THR ASN THR ASN ILE THR LEU PRO CYS SEQRES 20 G 332 ARG ILE ARG GLN ILE ILE ASN MET TRP GLN GLU VAL GLY SEQRES 21 G 332 ARG ALA MET TYR ALA PRO PRO SER LYS GLY ASN ILE THR SEQRES 22 G 332 CYS ILE SER ASP ILE THR GLY LEU LEU LEU THR ARG ASP SEQRES 23 G 332 GLY GLY GLU ASN LYS THR GLU ASN ASN ASP THR GLU ILE SEQRES 24 G 332 PHE ARG PRO GLY GLY GLY ASP MET LYS ASP ASN TRP ARG SEQRES 25 G 332 SER GLU LEU TYR LYS TYR LYS VAL VAL GLU ILE LYS SER SEQRES 26 G 332 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 H 231 GLN VAL GLN VAL VAL GLN SER GLY ALA GLU VAL ARG LYS SEQRES 2 H 231 PRO GLY ALA SER VAL LYS VAL SER CYS LYS VAL SER GLY SEQRES 3 H 231 PHE THR LEU THR GLY LEU SER ILE HIS TRP VAL ARG GLN SEQRES 4 H 231 ALA PRO GLY LYS GLY LEU GLU TRP MET GLY GLY PHE GLY SEQRES 5 H 231 PRO GLU GLU ASN GLU ILE ILE TYR ALA GLN LYS PHE GLN SEQRES 6 H 231 GLY ARG VAL SER MET THR GLU ASP THR SER THR ASN THR SEQRES 7 H 231 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 231 ALA VAL TYR TYR CYS ALA THR GLY GLY ASN TYR TYR ASN SEQRES 9 H 231 LEU TRP THR GLY TYR TYR PRO LEU ALA TYR TRP GLY GLN SEQRES 10 H 231 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 231 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 231 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 231 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 231 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 231 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 231 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 231 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 231 LYS VAL GLU PRO LYS SER CYS ASP LYS THR SEQRES 1 L 217 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 217 PRO GLY GLN LYS VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 217 SER ASN ILE GLY LYS ASN TYR VAL SER TRP TYR GLN GLN SEQRES 4 L 217 LEU PRO GLY ALA ALA PRO LYS LEU LEU ILE PHE ASP ASP SEQRES 5 L 217 THR GLN ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER LYS SER GLY THR SER ALA THR LEU ALA ILE THR GLY SEQRES 7 L 217 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS GLY THR SEQRES 8 L 217 TRP ASP SER SER LEU SER THR GLY GLN LEU PHE GLY GLY SEQRES 9 L 217 GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 L 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR MET ALA HIS ALA GLU CYS SER MODRES 3LQA ASN G 272 ASN GLYCOSYLATION SITE MODRES 3LQA ASN G 380 ASN GLYCOSYLATION SITE MODRES 3LQA ASN G 441 ASN GLYCOSYLATION SITE MODRES 3LQA ASN G 258 ASN GLYCOSYLATION SITE HET NAG G1000 14 HET NAG G1500 14 HET NAG G2000 14 HET NAG G2500 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 4(C8 H15 N O6) HELIX 1 1 ARG C 59 ASP C 63 5 5 HELIX 2 2 ASN G 97 LEU G 115 1 19 HELIX 3 3 ASN G 329 PHE G 348 1 20 HELIX 4 4 ASP G 362 THR G 367 1 6 HELIX 5 5 ASP G 476 TYR G 486 1 11 HELIX 6 6 GLN H 62 GLN H 65 5 4 HELIX 7 7 SER H 168 ALA H 170 5 3 HELIX 8 8 SER H 198 GLN H 204 1 7 HELIX 9 9 SER L 127 ALA L 133 1 7 HELIX 10 10 THR L 187 HIS L 194 1 8 SHEET 1 A 6 VAL C 3 LYS C 7 0 SHEET 2 A 6 GLN C 89 THR C 101 1 O GLN C 94 N VAL C 4 SHEET 3 A 6 ASP C 80 VAL C 86 -1 N ASP C 80 O LEU C 95 SHEET 4 A 6 PHE C 26 LYS C 29 -1 N LYS C 29 O ILE C 83 SHEET 5 A 6 LYS C 35 GLN C 40 -1 O LEU C 37 N TRP C 28 SHEET 6 A 6 PHE C 43 LYS C 46 -1 O PHE C 43 N GLN C 40 SHEET 1 B 4 VAL C 3 LYS C 7 0 SHEET 2 B 4 GLN C 89 THR C 101 1 O GLN C 94 N VAL C 4 SHEET 3 B 4 LEU C 114 GLU C 119 -1 O GLU C 119 N GLY C 99 SHEET 4 B 4 THR C 143 VAL C 146 -1 O LEU C 144 N LEU C 116 SHEET 1 C 3 VAL C 12 LEU C 14 0 SHEET 2 C 3 LEU C 69 ILE C 71 -1 O LEU C 69 N LEU C 14 SHEET 3 C 3 ALA C 55 ASP C 56 -1 N ASP C 56 O ILE C 70 SHEET 1 D 4 ASN C 137 ILE C 138 0 SHEET 2 D 4 VAL C 128 ARG C 131 -1 N CYS C 130 O ILE C 138 SHEET 3 D 4 TRP C 157 GLN C 163 -1 O THR C 160 N GLN C 129 SHEET 4 D 4 LYS C 166 ILE C 172 -1 O PHE C 170 N CYS C 159 SHEET 1 E 2 GLU G 90 ASN G 93 0 SHEET 2 E 2 ILE G 232 CYS G 235 -1 O CYS G 235 N GLU G 90 SHEET 1 F 4 ILE G 197 ALA G 198 0 SHEET 2 F 4 VAL G 119 LYS G 120 -1 N LYS G 120 O ILE G 197 SHEET 3 F 4 ARG G 431 MET G 433 -1 O MET G 433 N VAL G 119 SHEET 4 F 4 ILE G 422 ASN G 424 -1 N ILE G 423 O ALA G 432 SHEET 1 G 3 VAL G 238 VAL G 241 0 SHEET 2 G 3 ALA G 220 CYS G 224 -1 N ILE G 221 O VAL G 241 SHEET 3 G 3 LYS G 489 VAL G 491 -1 O VAL G 491 N ALA G 220 SHEET 1 H 5 LEU G 255 LEU G 257 0 SHEET 2 H 5 THR G 443 LEU G 451 -1 O GLY G 450 N LEU G 256 SHEET 3 H 5 HIS G 283 ILE G 293 -1 N VAL G 288 O ILE G 448 SHEET 4 H 5 HIS G 325 ILE G 328 -1 O ASN G 327 N THR G 291 SHEET 5 H 5 THR G 414 LEU G 415 -1 O LEU G 415 N CYS G 326 SHEET 1 I 4 ILE G 388 HIS G 389 0 SHEET 2 I 4 THR G 352 PHE G 355 -1 N ILE G 353 O HIS G 389 SHEET 3 I 4 THR G 467 PRO G 472 1 O PHE G 470 N GLU G 354 SHEET 4 I 4 LEU G 453 ARG G 455 -1 N THR G 454 O ARG G 471 SHEET 1 J 3 PHE G 370 ASN G 371 0 SHEET 2 J 3 PHE G 376 CYS G 379 -1 O PHE G 377 N PHE G 370 SHEET 3 J 3 CYS G 417 ARG G 420 -1 O ARG G 418 N TYR G 378 SHEET 1 K 2 GLN H 3 GLN H 6 0 SHEET 2 K 2 CYS H 22 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 1 L 6 GLU H 10 ARG H 12 0 SHEET 2 L 6 THR H 119 VAL H 123 1 O THR H 122 N ARG H 12 SHEET 3 L 6 ALA H 92 THR H 98 -1 N TYR H 94 O THR H 119 SHEET 4 L 6 ILE H 34 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 L 6 LEU H 45 PHE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 L 6 ILE H 58 TYR H 60 -1 O ILE H 59 N GLY H 50 SHEET 1 M 4 GLU H 10 ARG H 12 0 SHEET 2 M 4 THR H 119 VAL H 123 1 O THR H 122 N ARG H 12 SHEET 3 M 4 ALA H 92 THR H 98 -1 N TYR H 94 O THR H 119 SHEET 4 M 4 TYR H 114 TRP H 115 -1 O TYR H 114 N THR H 98 SHEET 1 N 3 VAL H 18 VAL H 20 0 SHEET 2 N 3 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 3 N 3 VAL H 68 ASP H 73 -1 N SER H 69 O GLU H 82 SHEET 1 O 4 SER H 132 LEU H 136 0 SHEET 2 O 4 THR H 147 TYR H 157 -1 O GLY H 151 N LEU H 136 SHEET 3 O 4 TYR H 188 PRO H 197 -1 O VAL H 196 N ALA H 148 SHEET 4 O 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 P 4 SER H 132 LEU H 136 0 SHEET 2 P 4 THR H 147 TYR H 157 -1 O GLY H 151 N LEU H 136 SHEET 3 P 4 TYR H 188 PRO H 197 -1 O VAL H 196 N ALA H 148 SHEET 4 P 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 Q 3 THR H 163 TRP H 166 0 SHEET 2 Q 3 TYR H 206 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 Q 3 THR H 217 VAL H 223 -1 O VAL H 219 N VAL H 210 SHEET 1 R 5 SER L 10 ALA L 13 0 SHEET 2 R 5 THR L 107 VAL L 111 1 O THR L 110 N VAL L 11 SHEET 3 R 5 ALA L 86 ASP L 94 -1 N ALA L 86 O LEU L 109 SHEET 4 R 5 VAL L 35 GLN L 40 -1 N SER L 36 O GLY L 91 SHEET 5 R 5 LYS L 47 ILE L 50 -1 O LYS L 47 N GLN L 39 SHEET 1 S 4 SER L 10 ALA L 13 0 SHEET 2 S 4 THR L 107 VAL L 111 1 O THR L 110 N VAL L 11 SHEET 3 S 4 ALA L 86 ASP L 94 -1 N ALA L 86 O LEU L 109 SHEET 4 S 4 GLY L 100 PHE L 103 -1 O LEU L 102 N THR L 92 SHEET 1 T 3 VAL L 19 SER L 24 0 SHEET 2 T 3 SER L 72 ILE L 77 -1 O ALA L 73 N CYS L 23 SHEET 3 T 3 PHE L 64 SER L 69 -1 N SER L 65 O ALA L 76 SHEET 1 U 4 SER L 120 PHE L 124 0 SHEET 2 U 4 THR L 137 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 U 4 TYR L 178 SER L 185 -1 O LEU L 184 N LEU L 138 SHEET 4 U 4 VAL L 165 THR L 167 -1 N GLU L 166 O TYR L 183 SHEET 1 V 4 SER L 159 VAL L 161 0 SHEET 2 V 4 THR L 151 ALA L 156 -1 N TRP L 154 O VAL L 161 SHEET 3 V 4 TYR L 197 HIS L 203 -1 O SER L 198 N LYS L 155 SHEET 4 V 4 SER L 206 MET L 212 -1 O MET L 212 N TYR L 197 SSBOND 1 CYS C 16 CYS C 84 1555 1555 2.01 SSBOND 2 CYS C 130 CYS C 159 1555 1555 2.05 SSBOND 3 CYS G 118 CYS G 201 1555 1555 2.04 SSBOND 4 CYS G 214 CYS G 243 1555 1555 2.03 SSBOND 5 CYS G 224 CYS G 235 1555 1555 2.05 SSBOND 6 CYS G 292 CYS G 326 1555 1555 2.02 SSBOND 7 CYS G 372 CYS G 444 1555 1555 2.03 SSBOND 8 CYS G 379 CYS G 417 1555 1555 2.03 SSBOND 9 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 10 CYS H 152 CYS H 208 1555 1555 2.01 SSBOND 11 CYS L 23 CYS L 90 1555 1555 2.04 SSBOND 12 CYS L 140 CYS L 199 1555 1555 2.02 LINK ND2 ASN G 258 C1 NAG G1000 1555 1555 1.57 LINK ND2 ASN G 272 C1 NAG G1500 1555 1555 1.52 LINK ND2 ASN G 380 C1 NAG G2000 1555 1555 1.53 LINK ND2 ASN G 441 C1 NAG G2500 1555 1555 1.56 CISPEP 1 TYR L 146 PRO L 147 0 -0.17 CRYST1 93.730 187.930 151.670 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006593 0.00000