HEADER TRANSFERASE 09-FEB-10 3LQI TITLE CRYSTAL STRUCTURE OF MLL1 PHD3-BROMO COMPLEXED WITH H3(1-9)K4ME2 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLL1 PHD3-BROMO; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: THIRD PHD FINGER AND BROMODOMAIN OF MLL1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H3; COMPND 8 CHAIN: R, S, T; COMPND 9 FRAGMENT: HISTONE H3 N-TERMINAL TAIL; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS PHD FINGER, BROMODOMAIN, MLL1, LEUKEMIA, H3(1-9)K4ME2, CHROMOSOMAL KEYWDS 2 PROTEIN, DNA-BINDING, NUCLEOSOME CORE, NUCLEUS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,D.J.PATEL REVDAT 4 06-SEP-23 3LQI 1 REMARK SEQADV LINK REVDAT 3 26-JUL-17 3LQI 1 SOURCE REMARK REVDAT 2 28-JUL-10 3LQI 1 JRNL REVDAT 1 07-JUL-10 3LQI 0 JRNL AUTH Z.WANG,J.SONG,T.A.MILNE,G.G.WANG,H.LI,C.D.ALLIS,D.J.PATEL JRNL TITL PRO ISOMERIZATION IN MLL1 PHD3-BROMO CASSETTE CONNECTS JRNL TITL 2 H3K4ME READOUT TO CYP33 AND HDAC-MEDIATED REPRESSION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 141 1183 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20541251 JRNL DOI 10.1016/J.CELL.2010.05.016 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2176 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 202 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.180 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 197 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28215 REMARK 200 MONOCHROMATOR : SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43155 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3LQH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 0.2 M AMMONIUM REMARK 280 ACETATE, 25% PEG3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.37200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.54250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.29200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.54250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.37200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.29200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1703 REMARK 465 PRO A 1779 REMARK 465 ASN A 1780 REMARK 465 LYS A 1781 REMARK 465 VAL A 1782 REMARK 465 SER A 1783 REMARK 465 SER A 1784 REMARK 465 GLN B 1703 REMARK 465 ASN B 1780 REMARK 465 LYS B 1781 REMARK 465 VAL B 1782 REMARK 465 SER B 1783 REMARK 465 SER B 1784 REMARK 465 ARG C 1664 REMARK 465 GLN C 1665 REMARK 465 ALA R 7 REMARK 465 ARG R 8 REMARK 465 LYS R 9 REMARK 465 ARG S 8 REMARK 465 LYS S 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B1596 C HIS B1596 O -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1582 54.35 -102.34 REMARK 500 ASN B1567 -168.63 -170.42 REMARK 500 ASN C1567 -154.50 -155.04 REMARK 500 ASP C1592 9.73 57.41 REMARK 500 CYS C1621 -179.96 -62.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1569 SG REMARK 620 2 CYS A1572 SG 113.6 REMARK 620 3 HIS A1596 ND1 104.3 93.8 REMARK 620 4 CYS A1599 SG 119.0 104.1 119.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1588 SG REMARK 620 2 CYS A1591 SG 108.1 REMARK 620 3 CYS A1621 SG 111.4 114.6 REMARK 620 4 CYS A1624 SG 109.7 111.0 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1569 SG REMARK 620 2 CYS B1572 SG 110.4 REMARK 620 3 HIS B1596 ND1 103.1 94.5 REMARK 620 4 CYS B1599 SG 122.8 106.1 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1588 SG REMARK 620 2 CYS B1591 SG 111.0 REMARK 620 3 CYS B1621 SG 109.9 116.0 REMARK 620 4 CYS B1624 SG 108.5 111.8 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1569 SG REMARK 620 2 CYS C1572 SG 111.0 REMARK 620 3 HIS C1596 ND1 97.7 99.1 REMARK 620 4 CYS C1599 SG 124.1 106.4 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 6 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1588 SG REMARK 620 2 CYS C1591 SG 103.3 REMARK 620 3 CYS C1621 SG 121.9 117.6 REMARK 620 4 CYS C1624 SG 100.7 103.1 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LQH RELATED DB: PDB REMARK 900 RELATED ID: 3LQJ RELATED DB: PDB DBREF 3LQI A 1566 1665 UNP Q03164 MLL1_HUMAN 1566 1665 DBREF 3LQI A 1703 1784 UNP Q03164 MLL1_HUMAN 1703 1784 DBREF 3LQI B 1566 1665 UNP Q03164 MLL1_HUMAN 1566 1665 DBREF 3LQI B 1703 1784 UNP Q03164 MLL1_HUMAN 1703 1784 DBREF 3LQI C 1566 1665 UNP Q03164 MLL1_HUMAN 1566 1665 DBREF 3LQI C 1703 1784 UNP Q03164 MLL1_HUMAN 1703 1784 DBREF 3LQI R 1 9 UNP P68431 H31_HUMAN 2 10 DBREF 3LQI S 1 9 UNP P68431 H31_HUMAN 2 10 DBREF 3LQI T 1 9 UNP P68431 H31_HUMAN 2 10 SEQADV 3LQI SER A 1565 UNP Q03164 EXPRESSION TAG SEQADV 3LQI SER B 1565 UNP Q03164 EXPRESSION TAG SEQADV 3LQI SER C 1565 UNP Q03164 EXPRESSION TAG SEQRES 1 A 183 SER GLY ASN PHE CYS PRO LEU CYS ASP LYS CYS TYR ASP SEQRES 2 A 183 ASP ASP ASP TYR GLU SER LYS MET MET GLN CYS GLY LYS SEQRES 3 A 183 CYS ASP ARG TRP VAL HIS SER LYS CYS GLU ASN LEU SER SEQRES 4 A 183 ASP GLU MET TYR GLU ILE LEU SER ASN LEU PRO GLU SER SEQRES 5 A 183 VAL ALA TYR THR CYS VAL ASN CYS THR GLU ARG HIS PRO SEQRES 6 A 183 ALA GLU TRP ARG LEU ALA LEU GLU LYS GLU LEU GLN ILE SEQRES 7 A 183 SER LEU LYS GLN VAL LEU THR ALA LEU LEU ASN SER ARG SEQRES 8 A 183 THR THR SER HIS LEU LEU ARG TYR ARG GLN GLN GLN PRO SEQRES 9 A 183 LEU ASP LEU GLU GLY VAL LYS ARG LYS MET ASP GLN GLY SEQRES 10 A 183 ASN TYR THR SER VAL LEU GLU PHE SER ASP ASP ILE VAL SEQRES 11 A 183 LYS ILE ILE GLN ALA ALA ILE ASN SER ASP GLY GLY GLN SEQRES 12 A 183 PRO GLU ILE LYS LYS ALA ASN SER MET VAL LYS SER PHE SEQRES 13 A 183 PHE ILE ARG GLN MET GLU ARG VAL PHE PRO TRP PHE SER SEQRES 14 A 183 VAL LYS LYS SER ARG PHE TRP GLU PRO ASN LYS VAL SER SEQRES 15 A 183 SER SEQRES 1 B 183 SER GLY ASN PHE CYS PRO LEU CYS ASP LYS CYS TYR ASP SEQRES 2 B 183 ASP ASP ASP TYR GLU SER LYS MET MET GLN CYS GLY LYS SEQRES 3 B 183 CYS ASP ARG TRP VAL HIS SER LYS CYS GLU ASN LEU SER SEQRES 4 B 183 ASP GLU MET TYR GLU ILE LEU SER ASN LEU PRO GLU SER SEQRES 5 B 183 VAL ALA TYR THR CYS VAL ASN CYS THR GLU ARG HIS PRO SEQRES 6 B 183 ALA GLU TRP ARG LEU ALA LEU GLU LYS GLU LEU GLN ILE SEQRES 7 B 183 SER LEU LYS GLN VAL LEU THR ALA LEU LEU ASN SER ARG SEQRES 8 B 183 THR THR SER HIS LEU LEU ARG TYR ARG GLN GLN GLN PRO SEQRES 9 B 183 LEU ASP LEU GLU GLY VAL LYS ARG LYS MET ASP GLN GLY SEQRES 10 B 183 ASN TYR THR SER VAL LEU GLU PHE SER ASP ASP ILE VAL SEQRES 11 B 183 LYS ILE ILE GLN ALA ALA ILE ASN SER ASP GLY GLY GLN SEQRES 12 B 183 PRO GLU ILE LYS LYS ALA ASN SER MET VAL LYS SER PHE SEQRES 13 B 183 PHE ILE ARG GLN MET GLU ARG VAL PHE PRO TRP PHE SER SEQRES 14 B 183 VAL LYS LYS SER ARG PHE TRP GLU PRO ASN LYS VAL SER SEQRES 15 B 183 SER SEQRES 1 C 183 SER GLY ASN PHE CYS PRO LEU CYS ASP LYS CYS TYR ASP SEQRES 2 C 183 ASP ASP ASP TYR GLU SER LYS MET MET GLN CYS GLY LYS SEQRES 3 C 183 CYS ASP ARG TRP VAL HIS SER LYS CYS GLU ASN LEU SER SEQRES 4 C 183 ASP GLU MET TYR GLU ILE LEU SER ASN LEU PRO GLU SER SEQRES 5 C 183 VAL ALA TYR THR CYS VAL ASN CYS THR GLU ARG HIS PRO SEQRES 6 C 183 ALA GLU TRP ARG LEU ALA LEU GLU LYS GLU LEU GLN ILE SEQRES 7 C 183 SER LEU LYS GLN VAL LEU THR ALA LEU LEU ASN SER ARG SEQRES 8 C 183 THR THR SER HIS LEU LEU ARG TYR ARG GLN GLN GLN PRO SEQRES 9 C 183 LEU ASP LEU GLU GLY VAL LYS ARG LYS MET ASP GLN GLY SEQRES 10 C 183 ASN TYR THR SER VAL LEU GLU PHE SER ASP ASP ILE VAL SEQRES 11 C 183 LYS ILE ILE GLN ALA ALA ILE ASN SER ASP GLY GLY GLN SEQRES 12 C 183 PRO GLU ILE LYS LYS ALA ASN SER MET VAL LYS SER PHE SEQRES 13 C 183 PHE ILE ARG GLN MET GLU ARG VAL PHE PRO TRP PHE SER SEQRES 14 C 183 VAL LYS LYS SER ARG PHE TRP GLU PRO ASN LYS VAL SER SEQRES 15 C 183 SER SEQRES 1 R 9 ALA ARG THR MLY GLN THR ALA ARG LYS SEQRES 1 S 9 ALA ARG THR MLY GLN THR ALA ARG LYS SEQRES 1 T 9 ALA ARG THR MLY GLN THR ALA ARG LYS MODRES 3LQI MLY R 4 LYS N-DIMETHYL-LYSINE MODRES 3LQI MLY S 4 LYS N-DIMETHYL-LYSINE MODRES 3LQI MLY T 4 LYS N-DIMETHYL-LYSINE HET MLY R 4 11 HET MLY S 4 11 HET MLY T 4 11 HET ZN A 1 1 HET ZN A 2 1 HET ZN B 3 1 HET ZN B 4 1 HET ZN C 5 1 HET ZN C 6 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM ZN ZINC ION FORMUL 4 MLY 3(C8 H18 N2 O2) FORMUL 7 ZN 6(ZN 2+) FORMUL 13 HOH *369(H2 O) HELIX 1 1 LYS A 1598 ASN A 1601 5 4 HELIX 2 2 SER A 1603 ASN A 1612 1 10 HELIX 3 3 ALA A 1630 ASN A 1653 1 24 HELIX 4 4 SER A 1654 ARG A 1662 1 9 HELIX 5 5 ASP A 1707 GLN A 1717 1 11 HELIX 6 6 SER A 1722 SER A 1740 1 19 HELIX 7 7 GLN A 1744 PHE A 1766 1 23 HELIX 8 8 SER A 1770 SER A 1774 5 5 HELIX 9 9 LYS B 1598 ASN B 1601 5 4 HELIX 10 10 SER B 1603 SER B 1611 1 9 HELIX 11 11 ALA B 1630 SER B 1654 1 25 HELIX 12 12 SER B 1654 ARG B 1662 1 9 HELIX 13 13 ASP B 1707 GLN B 1717 1 11 HELIX 14 14 SER B 1722 SER B 1740 1 19 HELIX 15 15 GLN B 1744 PHE B 1766 1 23 HELIX 16 16 LYS C 1598 ASN C 1601 5 4 HELIX 17 17 SER C 1603 SER C 1611 1 9 HELIX 18 18 ALA C 1630 SER C 1654 1 25 HELIX 19 19 ARG C 1655 LEU C 1661 5 7 HELIX 20 20 ASP C 1707 GLN C 1717 1 11 HELIX 21 21 SER C 1722 ASP C 1741 1 20 HELIX 22 22 GLN C 1744 PHE C 1766 1 23 HELIX 23 23 TRP C 1777 LYS C 1781 5 5 SHEET 1 A 2 GLY A1566 PHE A1568 0 SHEET 2 A 2 CYS A1575 ASP A1577 -1 O TYR A1576 N ASN A1567 SHEET 1 B 2 MET A1585 GLN A1587 0 SHEET 2 B 2 TRP A1594 HIS A1596 -1 O VAL A1595 N MET A1586 SHEET 1 C 2 GLY B1566 PHE B1568 0 SHEET 2 C 2 CYS B1575 ASP B1577 -1 O TYR B1576 N ASN B1567 SHEET 1 D 2 MET B1585 GLN B1587 0 SHEET 2 D 2 TRP B1594 HIS B1596 -1 O VAL B1595 N MET B1586 SHEET 1 E 2 GLY C1566 PHE C1568 0 SHEET 2 E 2 CYS C1575 ASP C1577 -1 O TYR C1576 N ASN C1567 SHEET 1 F 3 TRP C1594 HIS C1596 0 SHEET 2 F 3 MET C1585 GLN C1587 -1 N MET C1586 O VAL C1595 SHEET 3 F 3 ARG T 2 THR T 3 -1 O ARG T 2 N GLN C1587 LINK C THR R 3 N MLY R 4 1555 1555 1.33 LINK C MLY R 4 N GLN R 5 1555 1555 1.33 LINK C THR S 3 N MLY S 4 1555 1555 1.33 LINK C MLY S 4 N GLN S 5 1555 1555 1.33 LINK C THR T 3 N MLY T 4 1555 1555 1.33 LINK C MLY T 4 N GLN T 5 1555 1555 1.33 LINK ZN ZN A 1 SG CYS A1569 1555 1555 2.32 LINK ZN ZN A 1 SG CYS A1572 1555 1555 2.38 LINK ZN ZN A 1 ND1 HIS A1596 1555 1555 2.21 LINK ZN ZN A 1 SG CYS A1599 1555 1555 2.35 LINK ZN ZN A 2 SG CYS A1588 1555 1555 2.41 LINK ZN ZN A 2 SG CYS A1591 1555 1555 2.36 LINK ZN ZN A 2 SG CYS A1621 1555 1555 2.40 LINK ZN ZN A 2 SG CYS A1624 1555 1555 2.38 LINK ZN ZN B 3 SG CYS B1569 1555 1555 2.34 LINK ZN ZN B 3 SG CYS B1572 1555 1555 2.45 LINK ZN ZN B 3 ND1 HIS B1596 1555 1555 2.27 LINK ZN ZN B 3 SG CYS B1599 1555 1555 2.39 LINK ZN ZN B 4 SG CYS B1588 1555 1555 2.43 LINK ZN ZN B 4 SG CYS B1591 1555 1555 2.46 LINK ZN ZN B 4 SG CYS B1621 1555 1555 2.40 LINK ZN ZN B 4 SG CYS B1624 1555 1555 2.42 LINK ZN ZN C 5 SG CYS C1569 1555 1555 2.44 LINK ZN ZN C 5 SG CYS C1572 1555 1555 2.40 LINK ZN ZN C 5 ND1 HIS C1596 1555 1555 2.17 LINK ZN ZN C 5 SG CYS C1599 1555 1555 2.35 LINK ZN ZN C 6 SG CYS C1588 1555 1555 2.56 LINK ZN ZN C 6 SG CYS C1591 1555 1555 2.51 LINK ZN ZN C 6 SG CYS C1621 1555 1555 2.45 LINK ZN ZN C 6 SG CYS C1624 1555 1555 2.58 CISPEP 1 HIS A 1628 PRO A 1629 0 -0.13 CISPEP 2 HIS B 1628 PRO B 1629 0 -0.05 CISPEP 3 HIS C 1628 PRO C 1629 0 -0.51 SITE 1 AC1 4 CYS A1569 CYS A1572 HIS A1596 CYS A1599 SITE 1 AC2 4 CYS A1588 CYS A1591 CYS A1621 CYS A1624 SITE 1 AC3 4 CYS B1569 CYS B1572 HIS B1596 CYS B1599 SITE 1 AC4 4 CYS B1588 CYS B1591 CYS B1621 CYS B1624 SITE 1 AC5 4 CYS C1569 CYS C1572 HIS C1596 CYS C1599 SITE 1 AC6 4 CYS C1588 CYS C1591 CYS C1621 CYS C1624 CRYST1 48.744 90.584 125.085 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007995 0.00000