HEADER OXIDOREDUCTASE 09-FEB-10 3LQK TITLE CRYSTAL STRUCTURE OF DIPICOLINATE SYNTHASE SUBUNIT B FROM BACILLUS TITLE 2 HALODURANS C COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPICOLINATE SYNTHASE SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 86665; SOURCE 4 STRAIN: C-125; SOURCE 5 GENE: SPOVFB, BH2402; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS DIPICOLINATE SYNTHASE, FLAVOPROTEIN, PSI2, MCSG, STRUCTURAL GENOMICS, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,O.KAGAN,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 01-NOV-17 3LQK 1 REMARK REVDAT 2 13-JUL-11 3LQK 1 VERSN REVDAT 1 23-MAR-10 3LQK 0 JRNL AUTH B.NOCEK,O.KAGAN,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF DIPICOLINATE SYNTHASE SUBUNIT B FROM JRNL TITL 2 BACILLUS HALODURANS C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 14181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1460 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.987 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1511 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 997 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2058 ; 1.781 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2471 ; 1.077 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 6.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;37.549 ;25.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 256 ;14.202 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;19.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 241 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1660 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 264 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 979 ; 1.094 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 392 ; 0.301 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1589 ; 2.021 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 532 ; 3.245 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 467 ; 5.541 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6278 41.8054 -1.7784 REMARK 3 T TENSOR REMARK 3 T11: 0.1566 T22: 0.1420 REMARK 3 T33: 0.1313 T12: 0.0038 REMARK 3 T13: -0.0038 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 1.2519 L22: 2.0684 REMARK 3 L33: 0.8456 L12: -0.1598 REMARK 3 L13: -0.5469 L23: -0.0581 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: 0.2485 S13: -0.1127 REMARK 3 S21: -0.0275 S22: 0.0721 S23: -0.1268 REMARK 3 S31: -0.0110 S32: -0.0182 S33: -0.0394 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4889 41.8877 -2.9022 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1549 REMARK 3 T33: 0.1446 T12: 0.0139 REMARK 3 T13: 0.0358 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 3.8884 L22: 7.0889 REMARK 3 L33: 3.1194 L12: -4.4511 REMARK 3 L13: 0.6082 L23: -1.9642 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.2482 S13: 0.1196 REMARK 3 S21: -0.0497 S22: -0.0165 S23: -0.4956 REMARK 3 S31: -0.0954 S32: 0.0773 S33: 0.0359 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4166 41.0005 -5.2427 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.1821 REMARK 3 T33: 0.1110 T12: 0.0247 REMARK 3 T13: 0.0043 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 2.1807 L22: 4.4914 REMARK 3 L33: 0.5306 L12: -1.1193 REMARK 3 L13: 0.6746 L23: -1.4286 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.2607 S13: -0.1278 REMARK 3 S21: -0.0201 S22: -0.1509 S23: 0.0515 REMARK 3 S31: 0.0142 S32: -0.0078 S33: 0.1126 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0508 50.5485 -19.4317 REMARK 3 T TENSOR REMARK 3 T11: 0.4453 T22: 0.3230 REMARK 3 T33: 0.0736 T12: -0.0089 REMARK 3 T13: 0.0159 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.6418 L22: 2.4602 REMARK 3 L33: 8.7490 L12: -5.4453 REMARK 3 L13: 5.7021 L23: -9.3921 REMARK 3 S TENSOR REMARK 3 S11: 0.0891 S12: 0.1064 S13: -0.0068 REMARK 3 S21: -0.4398 S22: -0.0151 S23: -0.0011 REMARK 3 S31: 0.3940 S32: 0.0252 S33: -0.0740 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9604 43.3046 -11.0376 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1951 REMARK 3 T33: 0.0536 T12: 0.0137 REMARK 3 T13: -0.0085 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 6.8588 L22: 4.2477 REMARK 3 L33: 0.6576 L12: -3.4215 REMARK 3 L13: 0.2257 L23: -1.0246 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.4561 S13: -0.1093 REMARK 3 S21: -0.2452 S22: -0.0280 S23: 0.0513 REMARK 3 S31: 0.0348 S32: 0.0170 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2435 48.3311 1.5423 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1668 REMARK 3 T33: 0.1291 T12: 0.0083 REMARK 3 T13: 0.0114 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.5436 L22: 1.3398 REMARK 3 L33: 0.3509 L12: 0.4450 REMARK 3 L13: -0.1800 L23: 0.4620 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.0911 S13: -0.0279 REMARK 3 S21: -0.0109 S22: -0.0586 S23: 0.0139 REMARK 3 S31: -0.0135 S32: -0.0724 S33: 0.0461 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0388 52.4117 5.9535 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.1512 REMARK 3 T33: 0.1305 T12: 0.0089 REMARK 3 T13: 0.0099 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.4924 L22: 0.2679 REMARK 3 L33: 0.3197 L12: 0.2072 REMARK 3 L13: 0.1951 L23: 0.2496 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: 0.0228 S13: 0.0516 REMARK 3 S21: -0.0159 S22: -0.0600 S23: 0.0380 REMARK 3 S31: -0.0245 S32: -0.0316 S33: 0.0565 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2206 50.4871 14.7941 REMARK 3 T TENSOR REMARK 3 T11: 0.1455 T22: 0.1508 REMARK 3 T33: 0.1322 T12: 0.0052 REMARK 3 T13: 0.0157 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.6165 L22: 3.0288 REMARK 3 L33: 1.4062 L12: 0.7954 REMARK 3 L13: -0.3860 L23: 0.4879 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.0230 S13: 0.0779 REMARK 3 S21: 0.0599 S22: 0.0765 S23: -0.0811 REMARK 3 S31: 0.0786 S32: -0.0224 S33: -0.0201 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3163 47.5298 10.0956 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.1558 REMARK 3 T33: 0.1218 T12: 0.0101 REMARK 3 T13: 0.0128 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.6522 L22: 1.8309 REMARK 3 L33: 0.1616 L12: 1.0689 REMARK 3 L13: 0.3736 L23: 0.2558 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.0053 S13: -0.0993 REMARK 3 S21: 0.0533 S22: -0.0532 S23: -0.0919 REMARK 3 S31: 0.0247 S32: 0.0934 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6951 45.6296 14.9753 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.2052 REMARK 3 T33: 0.2308 T12: 0.0119 REMARK 3 T13: 0.0160 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: -1.1217 L22: 2.4137 REMARK 3 L33: 9.3707 L12: -0.3288 REMARK 3 L13: 1.0369 L23: -5.0997 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: -0.0719 S13: -0.0539 REMARK 3 S21: 0.0528 S22: -0.5352 S23: -0.3441 REMARK 3 S31: -0.0058 S32: 0.7623 S33: 0.5070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 0.3 M 195NSBD, 2.0 M REMARK 280 AMMONIUM DIHYDROGEN PHOSPHATE, PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.67500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.67500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.67500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.67500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 35.67500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.67500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 55.09250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 95.42301 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -55.09250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 95.42301 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 55.09250 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 95.42301 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 35.67500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 35.67500 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -55.09250 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 95.42301 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 35.67500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 55.09250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 95.42301 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -55.09250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 95.42301 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 55.09250 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 95.42301 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.67500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 272 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 ARG A 196 REMARK 465 ASP A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 46 OG1 CG2 REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 PHE A 51 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 SER A 99 OG REMARK 470 PHE A 195 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 129 87.28 -162.91 REMARK 500 ASN A 159 83.05 -159.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC41279.0 RELATED DB: TARGETDB DBREF 3LQK A 1 197 UNP Q9KA88 Q9KA88_BACHD 1 197 SEQADV 3LQK GLY A -1 UNP Q9KA88 EXPRESSION TAG SEQADV 3LQK HIS A 0 UNP Q9KA88 EXPRESSION TAG SEQADV 3LQK GLY A 198 UNP Q9KA88 EXPRESSION TAG SEQADV 3LQK SER A 199 UNP Q9KA88 EXPRESSION TAG SEQRES 1 A 201 GLY HIS MSE ASN PHE ALA GLY LYS HIS VAL GLY PHE GLY SEQRES 2 A 201 LEU THR GLY SER HIS CYS THR TYR HIS GLU VAL LEU PRO SEQRES 3 A 201 GLN MSE GLU ARG LEU VAL GLU LEU GLY ALA LYS VAL THR SEQRES 4 A 201 PRO PHE VAL THR HIS THR VAL GLN THR THR ASP THR LYS SEQRES 5 A 201 PHE GLY GLU SER SER GLU TRP ILE ASN LYS ILE LYS GLN SEQRES 6 A 201 ILE THR GLU GLU PRO ILE VAL ASP SER MSE VAL LYS ALA SEQRES 7 A 201 GLU PRO PHE GLY PRO LYS THR PRO LEU ASP CYS MSE VAL SEQRES 8 A 201 ILE ALA PRO MSE THR GLY ASN SER THR SER LYS PHE ALA SEQRES 9 A 201 ASN ALA MSE THR ASP SER PRO VAL LEU MSE GLY ALA LYS SEQRES 10 A 201 ALA THR LEU ARG ASN GLY LYS PRO VAL VAL VAL GLY ILE SEQRES 11 A 201 SER THR ASN ASP ALA LEU GLY LEU ASN GLY ILE ASN ILE SEQRES 12 A 201 MSE ARG LEU MSE ALA THR LYS ASN ILE TYR PHE ILE PRO SEQRES 13 A 201 PHE GLY GLN ASP ASN PRO GLN VAL LYS PRO ASN SER LEU SEQRES 14 A 201 VAL ALA ARG MSE GLU ALA LEU PRO GLU THR ILE GLU ALA SEQRES 15 A 201 ALA LEU ARG GLY GLN GLN TYR GLN PRO VAL LEU ILE GLU SEQRES 16 A 201 LYS PHE ARG ASP GLY SER MODRES 3LQK MSE A 1 MET SELENOMETHIONINE MODRES 3LQK MSE A 26 MET SELENOMETHIONINE MODRES 3LQK MSE A 73 MET SELENOMETHIONINE MODRES 3LQK MSE A 88 MET SELENOMETHIONINE MODRES 3LQK MSE A 93 MET SELENOMETHIONINE MODRES 3LQK MSE A 105 MET SELENOMETHIONINE MODRES 3LQK MSE A 112 MET SELENOMETHIONINE MODRES 3LQK MSE A 142 MET SELENOMETHIONINE MODRES 3LQK MSE A 145 MET SELENOMETHIONINE MODRES 3LQK MSE A 171 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 26 8 HET MSE A 73 8 HET MSE A 88 8 HET MSE A 93 8 HET MSE A 105 8 HET MSE A 112 8 HET MSE A 142 8 HET MSE A 145 8 HET MSE A 171 8 HET PO4 A 200 5 HET PO4 A 201 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 HOH *84(H2 O) HELIX 1 1 SER A 15 GLU A 21 5 7 HELIX 2 2 VAL A 22 LEU A 32 1 11 HELIX 3 3 SER A 55 THR A 65 1 11 HELIX 4 4 SER A 72 GLU A 77 1 6 HELIX 5 5 PRO A 78 GLY A 80 5 3 HELIX 6 6 THR A 94 ASN A 103 1 10 HELIX 7 7 SER A 108 ASN A 120 1 13 HELIX 8 8 ASN A 137 ALA A 146 1 10 HELIX 9 9 ALA A 173 ARG A 183 1 11 SHEET 1 A 5 LYS A 35 PHE A 39 0 SHEET 2 A 5 HIS A 7 GLY A 11 1 N PHE A 10 O THR A 37 SHEET 3 A 5 CYS A 87 MSE A 93 1 O VAL A 89 N GLY A 11 SHEET 4 A 5 VAL A 124 THR A 130 1 O GLY A 127 N MSE A 93 SHEET 5 A 5 ILE A 150 PHE A 152 1 O TYR A 151 N VAL A 124 SHEET 1 B 6 LYS A 35 PHE A 39 0 SHEET 2 B 6 HIS A 7 GLY A 11 1 N PHE A 10 O THR A 37 SHEET 3 B 6 CYS A 87 MSE A 93 1 O VAL A 89 N GLY A 11 SHEET 4 B 6 VAL A 124 THR A 130 1 O GLY A 127 N MSE A 93 SHEET 5 B 6 LEU A 167 ALA A 169 -1 O ALA A 169 N ILE A 128 SHEET 6 B 6 PHE A 155 GLN A 157 -1 N GLY A 156 O VAL A 168 LINK C MSE A 1 N ASN A 2 1555 1555 1.32 LINK C GLN A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N GLU A 27 1555 1555 1.32 LINK C SER A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N VAL A 74 1555 1555 1.33 LINK C CYS A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N VAL A 89 1555 1555 1.32 LINK C PRO A 92 N MSE A 93 1555 1555 1.34 LINK C MSE A 93 N THR A 94 1555 1555 1.34 LINK C ALA A 104 N MSE A 105 1555 1555 1.32 LINK C MSE A 105 N THR A 106 1555 1555 1.28 LINK C LEU A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N GLY A 113 1555 1555 1.35 LINK C ILE A 141 N MSE A 142 1555 1555 1.32 LINK C MSE A 142 N ARG A 143 1555 1555 1.31 LINK C LEU A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N ALA A 146 1555 1555 1.35 LINK C ARG A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N GLU A 172 1555 1555 1.33 CISPEP 1 ALA A 91 PRO A 92 0 -6.00 CISPEP 2 GLN A 188 PRO A 189 0 -3.44 SITE 1 AC1 8 THR A 13 GLY A 14 THR A 94 ASN A 96 SITE 2 AC1 8 SER A 97 HOH A 228 HOH A 248 HOH A 275 SITE 1 AC2 3 GLU A 77 ARG A 119 ASN A 131 CRYST1 110.185 110.185 71.350 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009076 0.005240 0.000000 0.00000 SCALE2 0.000000 0.010480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014015 0.00000 HETATM 1 N MSE A 1 14.132 27.978 8.359 1.00 40.01 N HETATM 2 CA MSE A 1 13.442 29.152 7.713 1.00 40.15 C HETATM 3 C MSE A 1 12.956 28.790 6.293 1.00 38.82 C HETATM 4 O MSE A 1 13.762 28.590 5.379 1.00 39.91 O HETATM 5 CB MSE A 1 14.413 30.338 7.663 1.00 40.51 C HETATM 6 CG MSE A 1 13.886 31.583 7.050 1.00 42.38 C HETATM 7 SE MSE A 1 14.932 33.211 7.541 1.00 48.01 SE HETATM 8 CE MSE A 1 16.712 32.522 7.019 1.00 43.52 C