HEADER TRANSFERASE 10-FEB-10 3LQS TITLE COMPLEX STRUCTURE OF D-AMINO ACID AMINOTRANSFERASE AND 4-AMINO-4,5- TITLE 2 DIHYDRO-THIOPHENECARBOXYLIC ACID (ADTA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ASPARTATE AMINOTRANSFERASE, D-AMINO ACID AMINOTRANSFERASE, COMPND 5 D-AMINO ACID TRANSAMINASE, DAAT; COMPND 6 EC: 2.6.1.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP.; SOURCE 3 ORGANISM_TAXID: 72579; SOURCE 4 STRAIN: YM-1; SOURCE 5 GENE: DAT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEMBL 18 KEYWDS PLP AMINOTRANSFERASE, MECHANISM-BASED INHIBITOR, STEREO-SPECIFICITY, KEYWDS 2 R-ADTA, AMINOTRANSFERASE, PYRIDOXAL PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.W.LEPORE,D.LIU,Y.PENG,M.FU,C.YASUDA,J.M.MANNING,R.B.SILVERMAN, AUTHOR 2 D.RINGE REVDAT 5 21-FEB-24 3LQS 1 REMARK REVDAT 4 17-JUL-19 3LQS 1 REMARK REVDAT 3 13-JUL-11 3LQS 1 VERSN REVDAT 2 21-APR-10 3LQS 1 JRNL REVDAT 1 16-MAR-10 3LQS 0 JRNL AUTH B.W.LEPORE,D.LIU,Y.PENG,M.FU,C.YASUDA,J.M.MANNING, JRNL AUTH 2 R.B.SILVERMAN,D.RINGE JRNL TITL CHIRAL DISCRIMINATION AMONG AMINOTRANSFERASES: INACTIVATION JRNL TITL 2 BY 4-AMINO-4,5-DIHYDROTHIOPHENECARBOXYLIC ACID. JRNL REF BIOCHEMISTRY V. 49 3138 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20192272 JRNL DOI 10.1021/BI902052X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 45930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2465 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3210 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4828 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6578 ; 1.764 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 5.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;36.436 ;25.021 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 891 ;15.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.494 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 731 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3668 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1954 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3315 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 283 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.323 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2974 ; 1.009 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4724 ; 1.649 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2111 ; 2.710 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1830 ; 4.277 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 63.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY THE HANGING REMARK 280 DROP METHOD . THE ENZYME WAS DIALYZED IN 0.2 M POTASSIUM REMARK 280 PHOSPHATE BUFFER PH 7.2, CONCENTRATED TO 40MG/ML, AND INCUBATED REMARK 280 WITH AN R-ADTA:PROTEIN MOLECULAR RATIO OF 200:1 PRIOR TO REMARK 280 CRYSTALLIZATION. THE ENZYME SOLUTION WAS MIXED WITH REMARK 280 CRYSTALLIZATION BUFFER AT PH 8.5 AND INCUBATED INITIALLY AT 30- REMARK 280 40 C, THEN ALLOWED TO RETURN TO ROOM TEMPERATURE., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.50550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.44650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.36400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.44650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.50550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.36400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 14 O HOH B 416 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 280 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 6 -113.40 59.07 REMARK 500 ASN A 83 -71.92 -99.56 REMARK 500 ASN A 105 1.97 -60.46 REMARK 500 ASN A 118 108.57 -166.03 REMARK 500 THR A 176 -81.49 -105.24 REMARK 500 SER A 180 44.38 -143.80 REMARK 500 ASN A 197 -155.69 -118.54 REMARK 500 GLU A 244 -126.04 54.77 REMARK 500 ARG A 257 -107.54 51.12 REMARK 500 PRO A 279 -99.15 -31.11 REMARK 500 ASN B 6 -106.86 60.70 REMARK 500 ASN B 83 -79.46 -89.37 REMARK 500 ASN B 105 5.46 -68.24 REMARK 500 THR B 176 -78.47 -104.95 REMARK 500 SER B 180 45.09 -145.95 REMARK 500 ASN B 197 -159.38 -115.83 REMARK 500 GLU B 244 -123.07 51.60 REMARK 500 ARG B 257 -112.52 46.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PSZ A 595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PSZ B 585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 424 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DAA RELATED DB: PDB DBREF 3LQS A 1 280 UNP P19938 DAAA_BACYM 2 281 DBREF 3LQS B 1 280 UNP P19938 DAAA_BACYM 2 281 SEQRES 1 A 280 GLY TYR THR LEU TRP ASN ASP GLN ILE VAL LYS ASP GLU SEQRES 2 A 280 GLU VAL LYS ILE ASP LYS GLU ASP ARG GLY TYR GLN PHE SEQRES 3 A 280 GLY ASP GLY VAL TYR GLU VAL VAL LYS VAL TYR ASN GLY SEQRES 4 A 280 GLU MET PHE THR VAL ASN GLU HIS ILE ASP ARG LEU TYR SEQRES 5 A 280 ALA SER ALA GLU LYS ILE ARG ILE THR ILE PRO TYR THR SEQRES 6 A 280 LYS ASP LYS PHE HIS GLN LEU LEU HIS GLU LEU VAL GLU SEQRES 7 A 280 LYS ASN GLU LEU ASN THR GLY HIS ILE TYR PHE GLN VAL SEQRES 8 A 280 THR ARG GLY THR SER PRO ARG ALA HIS GLN PHE PRO GLU SEQRES 9 A 280 ASN THR VAL LYS PRO VAL ILE ILE GLY TYR THR LYS GLU SEQRES 10 A 280 ASN PRO ARG PRO LEU GLU ASN LEU GLU LYS GLY VAL LYS SEQRES 11 A 280 ALA THR PHE VAL GLU ASP ILE ARG TRP LEU ARG CYS ASP SEQRES 12 A 280 ILE LYS SER LEU ASN LEU LEU GLY ALA VAL LEU ALA LYS SEQRES 13 A 280 GLN GLU ALA HIS GLU LYS GLY CYS TYR GLU ALA ILE LEU SEQRES 14 A 280 HIS ARG ASN ASN THR VAL THR GLU GLY SER SER SER ASN SEQRES 15 A 280 VAL PHE GLY ILE LYS ASP GLY ILE LEU TYR THR HIS PRO SEQRES 16 A 280 ALA ASN ASN MET ILE LEU LYS GLY ILE THR ARG ASP VAL SEQRES 17 A 280 VAL ILE ALA CYS ALA ASN GLU ILE ASN MET PRO VAL LYS SEQRES 18 A 280 GLU ILE PRO PHE THR THR HIS GLU ALA LEU LYS MET ASP SEQRES 19 A 280 GLU LEU PHE VAL THR SER THR THR SER GLU ILE THR PRO SEQRES 20 A 280 VAL ILE GLU ILE ASP GLY LYS LEU ILE ARG ASP GLY LYS SEQRES 21 A 280 VAL GLY GLU TRP THR ARG LYS LEU GLN LYS GLN PHE GLU SEQRES 22 A 280 THR LYS ILE PRO LYS PRO LEU SEQRES 1 B 280 GLY TYR THR LEU TRP ASN ASP GLN ILE VAL LYS ASP GLU SEQRES 2 B 280 GLU VAL LYS ILE ASP LYS GLU ASP ARG GLY TYR GLN PHE SEQRES 3 B 280 GLY ASP GLY VAL TYR GLU VAL VAL LYS VAL TYR ASN GLY SEQRES 4 B 280 GLU MET PHE THR VAL ASN GLU HIS ILE ASP ARG LEU TYR SEQRES 5 B 280 ALA SER ALA GLU LYS ILE ARG ILE THR ILE PRO TYR THR SEQRES 6 B 280 LYS ASP LYS PHE HIS GLN LEU LEU HIS GLU LEU VAL GLU SEQRES 7 B 280 LYS ASN GLU LEU ASN THR GLY HIS ILE TYR PHE GLN VAL SEQRES 8 B 280 THR ARG GLY THR SER PRO ARG ALA HIS GLN PHE PRO GLU SEQRES 9 B 280 ASN THR VAL LYS PRO VAL ILE ILE GLY TYR THR LYS GLU SEQRES 10 B 280 ASN PRO ARG PRO LEU GLU ASN LEU GLU LYS GLY VAL LYS SEQRES 11 B 280 ALA THR PHE VAL GLU ASP ILE ARG TRP LEU ARG CYS ASP SEQRES 12 B 280 ILE LYS SER LEU ASN LEU LEU GLY ALA VAL LEU ALA LYS SEQRES 13 B 280 GLN GLU ALA HIS GLU LYS GLY CYS TYR GLU ALA ILE LEU SEQRES 14 B 280 HIS ARG ASN ASN THR VAL THR GLU GLY SER SER SER ASN SEQRES 15 B 280 VAL PHE GLY ILE LYS ASP GLY ILE LEU TYR THR HIS PRO SEQRES 16 B 280 ALA ASN ASN MET ILE LEU LYS GLY ILE THR ARG ASP VAL SEQRES 17 B 280 VAL ILE ALA CYS ALA ASN GLU ILE ASN MET PRO VAL LYS SEQRES 18 B 280 GLU ILE PRO PHE THR THR HIS GLU ALA LEU LYS MET ASP SEQRES 19 B 280 GLU LEU PHE VAL THR SER THR THR SER GLU ILE THR PRO SEQRES 20 B 280 VAL ILE GLU ILE ASP GLY LYS LEU ILE ARG ASP GLY LYS SEQRES 21 B 280 VAL GLY GLU TRP THR ARG LYS LEU GLN LYS GLN PHE GLU SEQRES 22 B 280 THR LYS ILE PRO LYS PRO LEU HET PSZ A 595 24 HET PSZ B 585 24 HET ACY B 424 4 HETNAM PSZ 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY) HETNAM 2 PSZ METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2- HETNAM 3 PSZ CARBOXYLIC ACID HETNAM ACY ACETIC ACID FORMUL 3 PSZ 2(C13 H15 N2 O7 P S) FORMUL 5 ACY C2 H4 O2 FORMUL 6 HOH *297(H2 O) HELIX 1 1 GLU A 13 VAL A 15 5 3 HELIX 2 2 ASP A 21 PHE A 26 1 6 HELIX 3 3 THR A 43 ILE A 58 1 16 HELIX 4 4 THR A 65 GLU A 81 1 17 HELIX 5 5 PRO A 121 GLY A 128 1 8 HELIX 6 6 LEU A 149 LYS A 162 1 14 HELIX 7 7 GLY A 203 ILE A 216 1 14 HELIX 8 8 THR A 226 LEU A 231 1 6 HELIX 9 9 GLY A 262 THR A 274 1 13 HELIX 10 10 GLU B 13 VAL B 15 5 3 HELIX 11 11 ASP B 21 GLY B 27 1 7 HELIX 12 12 THR B 43 ILE B 58 1 16 HELIX 13 13 THR B 65 ASN B 80 1 16 HELIX 14 14 PRO B 121 GLY B 128 1 8 HELIX 15 15 LEU B 149 LYS B 162 1 14 HELIX 16 16 GLY B 203 ILE B 216 1 14 HELIX 17 17 THR B 226 LEU B 231 1 6 HELIX 18 18 GLY B 262 THR B 274 1 13 SHEET 1 A 6 GLN A 8 LYS A 11 0 SHEET 2 A 6 TYR A 2 TRP A 5 -1 N TRP A 5 O GLN A 8 SHEET 3 A 6 VAL A 110 GLU A 117 -1 O GLY A 113 N LEU A 4 SHEET 4 A 6 GLY A 85 THR A 92 -1 N TYR A 88 O TYR A 114 SHEET 5 A 6 GLY A 29 TYR A 37 -1 N VAL A 36 O GLY A 85 SHEET 6 A 6 GLU A 40 MET A 41 -1 O GLU A 40 N TYR A 37 SHEET 1 B 8 THR A 174 GLY A 178 0 SHEET 2 B 8 GLU A 166 ARG A 171 -1 N LEU A 169 O GLU A 177 SHEET 3 B 8 VAL A 129 GLU A 135 1 N THR A 132 O ILE A 168 SHEET 4 B 8 GLU A 244 ILE A 251 1 O GLU A 250 N ALA A 131 SHEET 5 B 8 GLU A 235 SER A 240 -1 N LEU A 236 O VAL A 248 SHEET 6 B 8 ASN A 182 LYS A 187 -1 N ILE A 186 O GLU A 235 SHEET 7 B 8 ILE A 190 THR A 193 -1 O TYR A 192 N GLY A 185 SHEET 8 B 8 VAL A 220 LYS A 221 1 O LYS A 221 N LEU A 191 SHEET 1 C 5 THR A 174 GLY A 178 0 SHEET 2 C 5 GLU A 166 ARG A 171 -1 N LEU A 169 O GLU A 177 SHEET 3 C 5 VAL A 129 GLU A 135 1 N THR A 132 O ILE A 168 SHEET 4 C 5 GLU A 244 ILE A 251 1 O GLU A 250 N ALA A 131 SHEET 5 C 5 LYS A 254 LEU A 255 -1 O LYS A 254 N ILE A 251 SHEET 1 D 6 GLN B 8 LYS B 11 0 SHEET 2 D 6 TYR B 2 TRP B 5 -1 N TRP B 5 O GLN B 8 SHEET 3 D 6 VAL B 110 GLU B 117 -1 O GLY B 113 N LEU B 4 SHEET 4 D 6 GLY B 85 THR B 92 -1 N GLN B 90 O ILE B 112 SHEET 5 D 6 GLY B 29 TYR B 37 -1 N VAL B 36 O GLY B 85 SHEET 6 D 6 GLU B 40 MET B 41 -1 O GLU B 40 N TYR B 37 SHEET 1 E 8 THR B 174 GLY B 178 0 SHEET 2 E 8 GLU B 166 ARG B 171 -1 N LEU B 169 O GLU B 177 SHEET 3 E 8 VAL B 129 GLU B 135 1 N THR B 132 O ILE B 168 SHEET 4 E 8 GLU B 244 ILE B 251 1 O PRO B 247 N VAL B 129 SHEET 5 E 8 GLU B 235 SER B 240 -1 N LEU B 236 O VAL B 248 SHEET 6 E 8 ASN B 182 LYS B 187 -1 N ILE B 186 O GLU B 235 SHEET 7 E 8 ILE B 190 THR B 193 -1 O TYR B 192 N GLY B 185 SHEET 8 E 8 VAL B 220 LYS B 221 1 O LYS B 221 N LEU B 191 SHEET 1 F 5 THR B 174 GLY B 178 0 SHEET 2 F 5 GLU B 166 ARG B 171 -1 N LEU B 169 O GLU B 177 SHEET 3 F 5 VAL B 129 GLU B 135 1 N THR B 132 O ILE B 168 SHEET 4 F 5 GLU B 244 ILE B 251 1 O PRO B 247 N VAL B 129 SHEET 5 F 5 LYS B 254 LEU B 255 -1 O LYS B 254 N ILE B 251 CISPEP 1 PRO A 279 LEU A 280 0 18.14 SITE 1 AC1 18 ARG A 50 ARG A 138 LYS A 145 GLU A 177 SITE 2 AC1 18 SER A 180 SER A 181 ASN A 182 LEU A 201 SITE 3 AC1 18 GLY A 203 ILE A 204 THR A 205 SER A 240 SITE 4 AC1 18 THR A 241 THR A 242 HOH A 293 HOH A 305 SITE 5 AC1 18 HOH A 312 HOH A 372 SITE 1 AC2 20 ARG B 50 ARG B 138 LYS B 145 GLU B 177 SITE 2 AC2 20 SER B 180 SER B 181 ASN B 182 LEU B 201 SITE 3 AC2 20 GLY B 203 ILE B 204 THR B 205 SER B 240 SITE 4 AC2 20 THR B 241 THR B 242 HOH B 297 HOH B 304 SITE 5 AC2 20 HOH B 316 HOH B 325 HOH B 349 ACY B 424 SITE 1 AC3 6 ARG A 98 HIS A 100 TYR B 31 VAL B 33 SITE 2 AC3 6 LYS B 145 PSZ B 585 CRYST1 77.011 90.728 88.893 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011249 0.00000