data_3LQW # _entry.id 3LQW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LQW pdb_00003lqw 10.2210/pdb3lqw/pdb RCSB RCSB057617 ? ? WWPDB D_1000057617 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id EnhiA.01206.a _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LQW _pdbx_database_status.recvd_initial_deposition_date 2010-02-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase from Entamoeba histolytica' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abendroth, J.' 1 ? primary 'Sankaran, B.' 2 ? primary 'Arakaki, T.' 3 ? primary 'Staker, B.' 4 ? # _cell.entry_id 3LQW _cell.length_a 63.140 _cell.length_b 63.140 _cell.length_c 108.370 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LQW _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;Deoxyuridine 5'-triphosphate nucleotidohydrolase ; 18009.453 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 141 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHMGTLEAQTQGPGSMDEVLLVKKLVEDAIVPTRGSKCAAGIDLYSNTNFIIQPHERFLVSTGVSVQIPHQCYG RIAPRSSLALKYGIDVGAGVIDEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELNTTDRGTNGFGS TGK ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHMGTLEAQTQGPGSMDEVLLVKKLVEDAIVPTRGSKCAAGIDLYSNTNFIIQPHERFLVSTGVSVQIPHQCYG RIAPRSSLALKYGIDVGAGVIDEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELNTTDRGTNGFGS TGK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier EnhiA.01206.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 MET n 1 10 GLY n 1 11 THR n 1 12 LEU n 1 13 GLU n 1 14 ALA n 1 15 GLN n 1 16 THR n 1 17 GLN n 1 18 GLY n 1 19 PRO n 1 20 GLY n 1 21 SER n 1 22 MET n 1 23 ASP n 1 24 GLU n 1 25 VAL n 1 26 LEU n 1 27 LEU n 1 28 VAL n 1 29 LYS n 1 30 LYS n 1 31 LEU n 1 32 VAL n 1 33 GLU n 1 34 ASP n 1 35 ALA n 1 36 ILE n 1 37 VAL n 1 38 PRO n 1 39 THR n 1 40 ARG n 1 41 GLY n 1 42 SER n 1 43 LYS n 1 44 CYS n 1 45 ALA n 1 46 ALA n 1 47 GLY n 1 48 ILE n 1 49 ASP n 1 50 LEU n 1 51 TYR n 1 52 SER n 1 53 ASN n 1 54 THR n 1 55 ASN n 1 56 PHE n 1 57 ILE n 1 58 ILE n 1 59 GLN n 1 60 PRO n 1 61 HIS n 1 62 GLU n 1 63 ARG n 1 64 PHE n 1 65 LEU n 1 66 VAL n 1 67 SER n 1 68 THR n 1 69 GLY n 1 70 VAL n 1 71 SER n 1 72 VAL n 1 73 GLN n 1 74 ILE n 1 75 PRO n 1 76 HIS n 1 77 GLN n 1 78 CYS n 1 79 TYR n 1 80 GLY n 1 81 ARG n 1 82 ILE n 1 83 ALA n 1 84 PRO n 1 85 ARG n 1 86 SER n 1 87 SER n 1 88 LEU n 1 89 ALA n 1 90 LEU n 1 91 LYS n 1 92 TYR n 1 93 GLY n 1 94 ILE n 1 95 ASP n 1 96 VAL n 1 97 GLY n 1 98 ALA n 1 99 GLY n 1 100 VAL n 1 101 ILE n 1 102 ASP n 1 103 GLU n 1 104 ASP n 1 105 TYR n 1 106 ARG n 1 107 GLY n 1 108 GLU n 1 109 ILE n 1 110 LYS n 1 111 VAL n 1 112 ILE n 1 113 LEU n 1 114 PHE n 1 115 ASN n 1 116 HIS n 1 117 SER n 1 118 ASN n 1 119 GLU n 1 120 ILE n 1 121 PHE n 1 122 ASN n 1 123 GLY n 1 124 ARG n 1 125 LYS n 1 126 GLY n 1 127 ASP n 1 128 ARG n 1 129 ILE n 1 130 ALA n 1 131 GLN n 1 132 LEU n 1 133 ILE n 1 134 ILE n 1 135 GLU n 1 136 ARG n 1 137 ILE n 1 138 SER n 1 139 TYR n 1 140 CYS n 1 141 ARG n 1 142 ILE n 1 143 SER n 1 144 GLU n 1 145 VAL n 1 146 LYS n 1 147 GLU n 1 148 LEU n 1 149 ASN n 1 150 THR n 1 151 THR n 1 152 ASP n 1 153 ARG n 1 154 GLY n 1 155 THR n 1 156 ASN n 1 157 GLY n 1 158 PHE n 1 159 GLY n 1 160 SER n 1 161 THR n 1 162 GLY n 1 163 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene EHI_189420 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HM-1:IMSS _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Entamoeba histolytica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 294381 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name AVA0421 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C4M4M6_ENTHI _struct_ref.pdbx_db_accession C4M4M6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDEVLLVKKLVEDAIVPTRGSKCAAGIDLYSNTNFIIQPHERFLVSTGVSVQIPHQCYGRIAPRSSLALKYGIDVGAGVI DEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELNTTDRGTNGFGSTGK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LQW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 163 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C4M4M6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 142 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 142 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LQW MET A 1 ? UNP C4M4M6 ? ? 'expression tag' -20 1 1 3LQW ALA A 2 ? UNP C4M4M6 ? ? 'expression tag' -19 2 1 3LQW HIS A 3 ? UNP C4M4M6 ? ? 'expression tag' -18 3 1 3LQW HIS A 4 ? UNP C4M4M6 ? ? 'expression tag' -17 4 1 3LQW HIS A 5 ? UNP C4M4M6 ? ? 'expression tag' -16 5 1 3LQW HIS A 6 ? UNP C4M4M6 ? ? 'expression tag' -15 6 1 3LQW HIS A 7 ? UNP C4M4M6 ? ? 'expression tag' -14 7 1 3LQW HIS A 8 ? UNP C4M4M6 ? ? 'expression tag' -13 8 1 3LQW MET A 9 ? UNP C4M4M6 ? ? 'expression tag' -12 9 1 3LQW GLY A 10 ? UNP C4M4M6 ? ? 'expression tag' -11 10 1 3LQW THR A 11 ? UNP C4M4M6 ? ? 'expression tag' -10 11 1 3LQW LEU A 12 ? UNP C4M4M6 ? ? 'expression tag' -9 12 1 3LQW GLU A 13 ? UNP C4M4M6 ? ? 'expression tag' -8 13 1 3LQW ALA A 14 ? UNP C4M4M6 ? ? 'expression tag' -7 14 1 3LQW GLN A 15 ? UNP C4M4M6 ? ? 'expression tag' -6 15 1 3LQW THR A 16 ? UNP C4M4M6 ? ? 'expression tag' -5 16 1 3LQW GLN A 17 ? UNP C4M4M6 ? ? 'expression tag' -4 17 1 3LQW GLY A 18 ? UNP C4M4M6 ? ? 'expression tag' -3 18 1 3LQW PRO A 19 ? UNP C4M4M6 ? ? 'expression tag' -2 19 1 3LQW GLY A 20 ? UNP C4M4M6 ? ? 'expression tag' -1 20 1 3LQW SER A 21 ? UNP C4M4M6 ? ? 'expression tag' 0 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LQW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;MD PACT SCREEN CONDITION D9: 100MM TRIS, 20% PEG 6000, 200MM LICL, ENHIA.01206.A AT 3.8 MG/ML, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K ; # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-01-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9774 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength 0.9774 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3LQW _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.300 _reflns.number_obs 39194 _reflns.number_all 39679 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.05000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.6500 _reflns.B_iso_Wilson_estimate 18.91 _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.33 _reflns_shell.percent_possible_all 91.5 _reflns_shell.Rmerge_I_obs 0.29000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.700 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3LQW _refine.ls_number_reflns_obs 39193 _refine.ls_number_reflns_all 39679 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.82 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 98.8 _refine.ls_R_factor_obs 0.133 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.132 _refine.ls_R_factor_R_free 0.155 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1970 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.975 _refine.correlation_coeff_Fo_to_Fc_free 0.971 _refine.B_iso_mean 12.28 _refine.aniso_B[1][1] 0.21000 _refine.aniso_B[2][2] 0.21000 _refine.aniso_B[3][3] -0.32000 _refine.aniso_B[1][2] 0.11000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE' _refine.pdbx_starting_model 'pdb entry 2hva modified with CCP4 program CHAINSAW' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model anisotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.038 _refine.pdbx_overall_ESU_R_Free 0.037 _refine.overall_SU_ML 0.020 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.031 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1086 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 1237 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 48.82 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1125 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 763 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.772 1.971 ? 1545 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.964 3.000 ? 1883 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.750 5.000 ? 159 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 27.806 23.673 ? 49 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.558 15.000 ? 198 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.345 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.110 0.200 ? 184 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1285 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.004 0.020 ? 228 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.829 1.500 ? 702 'X-RAY DIFFRACTION' ? r_mcbond_other 0.597 1.500 ? 288 'X-RAY DIFFRACTION' ? r_mcangle_it 2.902 2.000 ? 1154 'X-RAY DIFFRACTION' ? r_scbond_it 3.905 3.000 ? 423 'X-RAY DIFFRACTION' ? r_scangle_it 5.747 4.500 ? 378 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 0.903 1.000 ? 1888 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.30 _refine_ls_shell.d_res_low 1.33 _refine_ls_shell.number_reflns_R_work 2563 _refine_ls_shell.R_factor_R_work 0.1610 _refine_ls_shell.percent_reflns_obs 91.65 _refine_ls_shell.R_factor_R_free 0.1980 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 125 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3LQW _struct.title 'Crystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase from Entamoeba histolytica' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LQW _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;EMERALD BIOSTRUCTURES, ALS COLLABORATIVE CRYSTALLOGRAPHY, DEOXYURIDINA 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE, Hydrolase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ARG _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 85 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 93 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ARG _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 64 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 72 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 27 ? LYS A 30 ? LEU A 6 LYS A 9 A 2 ARG A 63 ? GLN A 73 ? ARG A 42 GLN A 52 A 3 GLU A 108 ? ASN A 115 ? GLU A 87 ASN A 94 A 4 ILE A 94 ? VAL A 96 ? ILE A 73 VAL A 75 B 1 THR A 39 ? ARG A 40 ? THR A 18 ARG A 19 B 2 GLY A 47 ? TYR A 51 ? GLY A 26 TYR A 30 B 3 ARG A 128 ? ARG A 136 ? ARG A 107 ARG A 115 B 4 CYS A 78 ? ALA A 83 ? CYS A 57 ALA A 62 B 5 VAL A 100 ? ILE A 101 ? VAL A 79 ILE A 80 C 1 PHE A 56 ? ILE A 58 ? PHE A 35 ILE A 37 C 2 PHE A 121 ? GLY A 123 ? PHE A 100 GLY A 102 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 29 ? N LYS A 8 O SER A 71 ? O SER A 50 A 2 3 N VAL A 66 ? N VAL A 45 O VAL A 111 ? O VAL A 90 A 3 4 O PHE A 114 ? O PHE A 93 N ASP A 95 ? N ASP A 74 B 1 2 N THR A 39 ? N THR A 18 O ASP A 49 ? O ASP A 28 B 2 3 N LEU A 50 ? N LEU A 29 O ALA A 130 ? O ALA A 109 B 3 4 O GLN A 131 ? O GLN A 110 N ALA A 83 ? N ALA A 62 B 4 5 N GLY A 80 ? N GLY A 59 O ILE A 101 ? O ILE A 80 C 1 2 N PHE A 56 ? N PHE A 35 O GLY A 123 ? O GLY A 102 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 151 ? 7 'BINDING SITE FOR RESIDUE EDO A 151' AC2 Software A GOL 150 ? 9 'BINDING SITE FOR RESIDUE GOL A 150' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 117 ? SER A 96 . ? 1_555 ? 2 AC1 7 ASN A 118 ? ASN A 97 . ? 1_555 ? 3 AC1 7 GLU A 119 ? GLU A 98 . ? 1_555 ? 4 AC1 7 SER A 143 ? SER A 122 . ? 4_555 ? 5 AC1 7 GLU A 144 ? GLU A 123 . ? 4_555 ? 6 AC1 7 HOH D . ? HOH A 177 . ? 3_555 ? 7 AC1 7 HOH D . ? HOH A 185 . ? 1_555 ? 8 AC2 9 ASP A 95 ? ASP A 74 . ? 1_555 ? 9 AC2 9 ASP A 95 ? ASP A 74 . ? 2_555 ? 10 AC2 9 ASP A 95 ? ASP A 74 . ? 3_555 ? 11 AC2 9 VAL A 96 ? VAL A 75 . ? 1_555 ? 12 AC2 9 VAL A 96 ? VAL A 75 . ? 2_555 ? 13 AC2 9 GLY A 97 ? GLY A 76 . ? 1_555 ? 14 AC2 9 GLY A 97 ? GLY A 76 . ? 3_555 ? 15 AC2 9 ALA A 98 ? ALA A 77 . ? 1_555 ? 16 AC2 9 ALA A 98 ? ALA A 77 . ? 3_555 ? # _database_PDB_matrix.entry_id 3LQW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LQW _atom_sites.fract_transf_matrix[1][1] 0.015838 _atom_sites.fract_transf_matrix[1][2] 0.009144 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018288 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009228 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -20 ? ? ? A . n A 1 2 ALA 2 -19 ? ? ? A . n A 1 3 HIS 3 -18 ? ? ? A . n A 1 4 HIS 4 -17 ? ? ? A . n A 1 5 HIS 5 -16 ? ? ? A . n A 1 6 HIS 6 -15 ? ? ? A . n A 1 7 HIS 7 -14 ? ? ? A . n A 1 8 HIS 8 -13 ? ? ? A . n A 1 9 MET 9 -12 ? ? ? A . n A 1 10 GLY 10 -11 ? ? ? A . n A 1 11 THR 11 -10 ? ? ? A . n A 1 12 LEU 12 -9 ? ? ? A . n A 1 13 GLU 13 -8 ? ? ? A . n A 1 14 ALA 14 -7 ? ? ? A . n A 1 15 GLN 15 -6 ? ? ? A . n A 1 16 THR 16 -5 ? ? ? A . n A 1 17 GLN 17 -4 ? ? ? A . n A 1 18 GLY 18 -3 ? ? ? A . n A 1 19 PRO 19 -2 ? ? ? A . n A 1 20 GLY 20 -1 ? ? ? A . n A 1 21 SER 21 0 ? ? ? A . n A 1 22 MET 22 1 ? ? ? A . n A 1 23 ASP 23 2 2 ASP ASP A . n A 1 24 GLU 24 3 3 GLU GLU A . n A 1 25 VAL 25 4 4 VAL VAL A . n A 1 26 LEU 26 5 5 LEU LEU A . n A 1 27 LEU 27 6 6 LEU LEU A . n A 1 28 VAL 28 7 7 VAL VAL A . n A 1 29 LYS 29 8 8 LYS LYS A . n A 1 30 LYS 30 9 9 LYS LYS A . n A 1 31 LEU 31 10 10 LEU LEU A . n A 1 32 VAL 32 11 11 VAL VAL A . n A 1 33 GLU 33 12 12 GLU GLU A . n A 1 34 ASP 34 13 13 ASP ASP A . n A 1 35 ALA 35 14 14 ALA ALA A . n A 1 36 ILE 36 15 15 ILE ILE A . n A 1 37 VAL 37 16 16 VAL VAL A . n A 1 38 PRO 38 17 17 PRO PRO A . n A 1 39 THR 39 18 18 THR THR A . n A 1 40 ARG 40 19 19 ARG ARG A . n A 1 41 GLY 41 20 20 GLY GLY A . n A 1 42 SER 42 21 21 SER SER A . n A 1 43 LYS 43 22 22 LYS LYS A . n A 1 44 CYS 44 23 23 CYS CYS A . n A 1 45 ALA 45 24 24 ALA ALA A . n A 1 46 ALA 46 25 25 ALA ALA A . n A 1 47 GLY 47 26 26 GLY GLY A . n A 1 48 ILE 48 27 27 ILE ILE A . n A 1 49 ASP 49 28 28 ASP ASP A . n A 1 50 LEU 50 29 29 LEU LEU A . n A 1 51 TYR 51 30 30 TYR TYR A . n A 1 52 SER 52 31 31 SER SER A . n A 1 53 ASN 53 32 32 ASN ASN A . n A 1 54 THR 54 33 33 THR THR A . n A 1 55 ASN 55 34 34 ASN ASN A . n A 1 56 PHE 56 35 35 PHE PHE A . n A 1 57 ILE 57 36 36 ILE ILE A . n A 1 58 ILE 58 37 37 ILE ILE A . n A 1 59 GLN 59 38 38 GLN GLN A . n A 1 60 PRO 60 39 39 PRO PRO A . n A 1 61 HIS 61 40 40 HIS HIS A . n A 1 62 GLU 62 41 41 GLU GLU A . n A 1 63 ARG 63 42 42 ARG ARG A . n A 1 64 PHE 64 43 43 PHE PHE A . n A 1 65 LEU 65 44 44 LEU LEU A . n A 1 66 VAL 66 45 45 VAL VAL A . n A 1 67 SER 67 46 46 SER SER A . n A 1 68 THR 68 47 47 THR THR A . n A 1 69 GLY 69 48 48 GLY GLY A . n A 1 70 VAL 70 49 49 VAL VAL A . n A 1 71 SER 71 50 50 SER SER A . n A 1 72 VAL 72 51 51 VAL VAL A . n A 1 73 GLN 73 52 52 GLN GLN A . n A 1 74 ILE 74 53 53 ILE ILE A . n A 1 75 PRO 75 54 54 PRO PRO A . n A 1 76 HIS 76 55 55 HIS HIS A . n A 1 77 GLN 77 56 56 GLN GLN A . n A 1 78 CYS 78 57 57 CYS CYS A . n A 1 79 TYR 79 58 58 TYR TYR A . n A 1 80 GLY 80 59 59 GLY GLY A . n A 1 81 ARG 81 60 60 ARG ARG A . n A 1 82 ILE 82 61 61 ILE ILE A . n A 1 83 ALA 83 62 62 ALA ALA A . n A 1 84 PRO 84 63 63 PRO PRO A . n A 1 85 ARG 85 64 64 ARG ARG A . n A 1 86 SER 86 65 65 SER SER A . n A 1 87 SER 87 66 66 SER SER A . n A 1 88 LEU 88 67 67 LEU LEU A . n A 1 89 ALA 89 68 68 ALA ALA A . n A 1 90 LEU 90 69 69 LEU LEU A . n A 1 91 LYS 91 70 70 LYS LYS A . n A 1 92 TYR 92 71 71 TYR TYR A . n A 1 93 GLY 93 72 72 GLY GLY A . n A 1 94 ILE 94 73 73 ILE ILE A . n A 1 95 ASP 95 74 74 ASP ASP A . n A 1 96 VAL 96 75 75 VAL VAL A . n A 1 97 GLY 97 76 76 GLY GLY A . n A 1 98 ALA 98 77 77 ALA ALA A . n A 1 99 GLY 99 78 78 GLY GLY A . n A 1 100 VAL 100 79 79 VAL VAL A . n A 1 101 ILE 101 80 80 ILE ILE A . n A 1 102 ASP 102 81 81 ASP ASP A . n A 1 103 GLU 103 82 82 GLU GLU A . n A 1 104 ASP 104 83 83 ASP ASP A . n A 1 105 TYR 105 84 84 TYR TYR A . n A 1 106 ARG 106 85 85 ARG ARG A . n A 1 107 GLY 107 86 86 GLY GLY A . n A 1 108 GLU 108 87 87 GLU GLU A . n A 1 109 ILE 109 88 88 ILE ILE A . n A 1 110 LYS 110 89 89 LYS LYS A . n A 1 111 VAL 111 90 90 VAL VAL A . n A 1 112 ILE 112 91 91 ILE ILE A . n A 1 113 LEU 113 92 92 LEU LEU A . n A 1 114 PHE 114 93 93 PHE PHE A . n A 1 115 ASN 115 94 94 ASN ASN A . n A 1 116 HIS 116 95 95 HIS HIS A . n A 1 117 SER 117 96 96 SER SER A . n A 1 118 ASN 118 97 97 ASN ASN A . n A 1 119 GLU 119 98 98 GLU GLU A . n A 1 120 ILE 120 99 99 ILE ILE A . n A 1 121 PHE 121 100 100 PHE PHE A . n A 1 122 ASN 122 101 101 ASN ASN A . n A 1 123 GLY 123 102 102 GLY GLY A . n A 1 124 ARG 124 103 103 ARG ARG A . n A 1 125 LYS 125 104 104 LYS LYS A . n A 1 126 GLY 126 105 105 GLY GLY A . n A 1 127 ASP 127 106 106 ASP ASP A . n A 1 128 ARG 128 107 107 ARG ARG A . n A 1 129 ILE 129 108 108 ILE ILE A . n A 1 130 ALA 130 109 109 ALA ALA A . n A 1 131 GLN 131 110 110 GLN GLN A . n A 1 132 LEU 132 111 111 LEU LEU A . n A 1 133 ILE 133 112 112 ILE ILE A . n A 1 134 ILE 134 113 113 ILE ILE A . n A 1 135 GLU 135 114 114 GLU GLU A . n A 1 136 ARG 136 115 115 ARG ARG A . n A 1 137 ILE 137 116 116 ILE ILE A . n A 1 138 SER 138 117 117 SER SER A . n A 1 139 TYR 139 118 118 TYR TYR A . n A 1 140 CYS 140 119 119 CYS CYS A . n A 1 141 ARG 141 120 120 ARG ARG A . n A 1 142 ILE 142 121 121 ILE ILE A . n A 1 143 SER 143 122 122 SER SER A . n A 1 144 GLU 144 123 123 GLU GLU A . n A 1 145 VAL 145 124 124 VAL VAL A . n A 1 146 LYS 146 125 125 LYS LYS A . n A 1 147 GLU 147 126 126 GLU GLU A . n A 1 148 LEU 148 127 127 LEU LEU A . n A 1 149 ASN 149 128 128 ASN ASN A . n A 1 150 THR 150 129 129 THR THR A . n A 1 151 THR 151 130 130 THR THR A . n A 1 152 ASP 152 131 ? ? ? A . n A 1 153 ARG 153 132 ? ? ? A . n A 1 154 GLY 154 133 ? ? ? A . n A 1 155 THR 155 134 ? ? ? A . n A 1 156 ASN 156 135 ? ? ? A . n A 1 157 GLY 157 136 ? ? ? A . n A 1 158 PHE 158 137 ? ? ? A . n A 1 159 GLY 159 138 ? ? ? A . n A 1 160 SER 160 139 ? ? ? A . n A 1 161 THR 161 140 ? ? ? A . n A 1 162 GLY 162 141 ? ? ? A . n A 1 163 LYS 163 142 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 151 151 EDO EDO A . C 3 GOL 1 150 150 GOL GOL A . D 4 HOH 1 143 143 HOH HOH A . D 4 HOH 2 144 144 HOH HOH A . D 4 HOH 3 145 145 HOH HOH A . D 4 HOH 4 146 146 HOH HOH A . D 4 HOH 5 147 147 HOH HOH A . D 4 HOH 6 148 148 HOH HOH A . D 4 HOH 7 149 149 HOH HOH A . D 4 HOH 8 152 152 HOH HOH A . D 4 HOH 9 153 153 HOH HOH A . D 4 HOH 10 154 154 HOH HOH A . D 4 HOH 11 155 155 HOH HOH A . D 4 HOH 12 156 156 HOH HOH A . D 4 HOH 13 157 157 HOH HOH A . D 4 HOH 14 158 158 HOH HOH A . D 4 HOH 15 159 159 HOH HOH A . D 4 HOH 16 160 160 HOH HOH A . D 4 HOH 17 161 161 HOH HOH A . D 4 HOH 18 162 162 HOH HOH A . D 4 HOH 19 163 163 HOH HOH A . D 4 HOH 20 164 164 HOH HOH A . D 4 HOH 21 165 165 HOH HOH A . D 4 HOH 22 166 166 HOH HOH A . D 4 HOH 23 167 167 HOH HOH A . D 4 HOH 24 168 168 HOH HOH A . D 4 HOH 25 169 169 HOH HOH A . D 4 HOH 26 170 170 HOH HOH A . D 4 HOH 27 171 171 HOH HOH A . D 4 HOH 28 172 172 HOH HOH A . D 4 HOH 29 173 173 HOH HOH A . D 4 HOH 30 174 174 HOH HOH A . D 4 HOH 31 175 175 HOH HOH A . D 4 HOH 32 176 176 HOH HOH A . D 4 HOH 33 177 177 HOH HOH A . D 4 HOH 34 178 178 HOH HOH A . D 4 HOH 35 179 179 HOH HOH A . D 4 HOH 36 180 180 HOH HOH A . D 4 HOH 37 181 181 HOH HOH A . D 4 HOH 38 182 182 HOH HOH A . D 4 HOH 39 183 183 HOH HOH A . D 4 HOH 40 184 184 HOH HOH A . D 4 HOH 41 185 185 HOH HOH A . D 4 HOH 42 186 186 HOH HOH A . D 4 HOH 43 187 187 HOH HOH A . D 4 HOH 44 188 188 HOH HOH A . D 4 HOH 45 189 189 HOH HOH A . D 4 HOH 46 190 190 HOH HOH A . D 4 HOH 47 191 191 HOH HOH A . D 4 HOH 48 192 192 HOH HOH A . D 4 HOH 49 193 193 HOH HOH A . D 4 HOH 50 194 194 HOH HOH A . D 4 HOH 51 195 195 HOH HOH A . D 4 HOH 52 196 196 HOH HOH A . D 4 HOH 53 197 197 HOH HOH A . D 4 HOH 54 198 198 HOH HOH A . D 4 HOH 55 199 199 HOH HOH A . D 4 HOH 56 200 200 HOH HOH A . D 4 HOH 57 201 201 HOH HOH A . D 4 HOH 58 202 202 HOH HOH A . D 4 HOH 59 203 203 HOH HOH A . D 4 HOH 60 204 204 HOH HOH A . D 4 HOH 61 205 205 HOH HOH A . D 4 HOH 62 206 206 HOH HOH A . D 4 HOH 63 207 207 HOH HOH A . D 4 HOH 64 208 208 HOH HOH A . D 4 HOH 65 209 209 HOH HOH A . D 4 HOH 66 210 210 HOH HOH A . D 4 HOH 67 211 211 HOH HOH A . D 4 HOH 68 212 212 HOH HOH A . D 4 HOH 69 213 213 HOH HOH A . D 4 HOH 70 214 214 HOH HOH A . D 4 HOH 71 215 215 HOH HOH A . D 4 HOH 72 216 216 HOH HOH A . D 4 HOH 73 217 217 HOH HOH A . D 4 HOH 74 218 218 HOH HOH A . D 4 HOH 75 219 219 HOH HOH A . D 4 HOH 76 220 220 HOH HOH A . D 4 HOH 77 221 221 HOH HOH A . D 4 HOH 78 222 222 HOH HOH A . D 4 HOH 79 223 223 HOH HOH A . D 4 HOH 80 224 224 HOH HOH A . D 4 HOH 81 225 225 HOH HOH A . D 4 HOH 82 226 226 HOH HOH A . D 4 HOH 83 227 227 HOH HOH A . D 4 HOH 84 228 228 HOH HOH A . D 4 HOH 85 229 229 HOH HOH A . D 4 HOH 86 230 230 HOH HOH A . D 4 HOH 87 231 231 HOH HOH A . D 4 HOH 88 232 232 HOH HOH A . D 4 HOH 89 233 233 HOH HOH A . D 4 HOH 90 234 234 HOH HOH A . D 4 HOH 91 235 235 HOH HOH A . D 4 HOH 92 236 236 HOH HOH A . D 4 HOH 93 237 237 HOH HOH A . D 4 HOH 94 238 238 HOH HOH A . D 4 HOH 95 239 239 HOH HOH A . D 4 HOH 96 240 240 HOH HOH A . D 4 HOH 97 241 241 HOH HOH A . D 4 HOH 98 242 242 HOH HOH A . D 4 HOH 99 243 243 HOH HOH A . D 4 HOH 100 244 244 HOH HOH A . D 4 HOH 101 245 245 HOH HOH A . D 4 HOH 102 246 246 HOH HOH A . D 4 HOH 103 247 247 HOH HOH A . D 4 HOH 104 248 248 HOH HOH A . D 4 HOH 105 249 249 HOH HOH A . D 4 HOH 106 250 250 HOH HOH A . D 4 HOH 107 251 251 HOH HOH A . D 4 HOH 108 252 252 HOH HOH A . D 4 HOH 109 253 253 HOH HOH A . D 4 HOH 110 254 254 HOH HOH A . D 4 HOH 111 255 255 HOH HOH A . D 4 HOH 112 256 256 HOH HOH A . D 4 HOH 113 257 257 HOH HOH A . D 4 HOH 114 258 258 HOH HOH A . D 4 HOH 115 259 259 HOH HOH A . D 4 HOH 116 260 260 HOH HOH A . D 4 HOH 117 261 261 HOH HOH A . D 4 HOH 118 262 262 HOH HOH A . D 4 HOH 119 263 263 HOH HOH A . D 4 HOH 120 264 264 HOH HOH A . D 4 HOH 121 265 265 HOH HOH A . D 4 HOH 122 266 266 HOH HOH A . D 4 HOH 123 267 267 HOH HOH A . D 4 HOH 124 268 268 HOH HOH A . D 4 HOH 125 269 269 HOH HOH A . D 4 HOH 126 270 270 HOH HOH A . D 4 HOH 127 271 271 HOH HOH A . D 4 HOH 128 272 272 HOH HOH A . D 4 HOH 129 273 273 HOH HOH A . D 4 HOH 130 274 274 HOH HOH A . D 4 HOH 131 275 275 HOH HOH A . D 4 HOH 132 276 276 HOH HOH A . D 4 HOH 133 277 277 HOH HOH A . D 4 HOH 134 278 278 HOH HOH A . D 4 HOH 135 279 279 HOH HOH A . D 4 HOH 136 280 280 HOH HOH A . D 4 HOH 137 281 281 HOH HOH A . D 4 HOH 138 282 282 HOH HOH A . D 4 HOH 139 283 283 HOH HOH A . D 4 HOH 140 284 284 HOH HOH A . D 4 HOH 141 285 285 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10550 ? 1 MORE -42 ? 1 'SSA (A^2)' 15630 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A GOL 150 ? C GOL . 2 1 A GOL 150 ? C GOL . 3 1 A HOH 143 ? D HOH . 4 1 A HOH 144 ? D HOH . 5 1 A HOH 155 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 2 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 120 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.00 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 78 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 B _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 78 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 B _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 78 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 128.34 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation 15.24 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 77 ? B 40.75 -128.10 2 1 TYR A 118 ? ? -94.58 36.48 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 12 ? CG ? A GLU 33 CG 2 1 Y 1 A GLU 12 ? CD ? A GLU 33 CD 3 1 Y 1 A GLU 12 ? OE1 ? A GLU 33 OE1 4 1 Y 1 A GLU 12 ? OE2 ? A GLU 33 OE2 5 1 Y 1 A LYS 22 ? CG ? A LYS 43 CG 6 1 Y 1 A LYS 22 ? CD ? A LYS 43 CD 7 1 Y 1 A LYS 22 ? CE ? A LYS 43 CE 8 1 Y 1 A LYS 22 ? NZ ? A LYS 43 NZ 9 1 Y 1 A ARG 103 ? CG ? A ARG 124 CG 10 1 Y 1 A ARG 103 ? CD ? A ARG 124 CD 11 1 Y 1 A ARG 103 ? NE ? A ARG 124 NE 12 1 Y 1 A ARG 103 ? CZ ? A ARG 124 CZ 13 1 Y 1 A ARG 103 ? NH1 ? A ARG 124 NH1 14 1 Y 1 A ARG 103 ? NH2 ? A ARG 124 NH2 15 1 Y 1 A LYS 125 ? CG ? A LYS 146 CG 16 1 Y 1 A LYS 125 ? CD ? A LYS 146 CD 17 1 Y 1 A LYS 125 ? CE ? A LYS 146 CE 18 1 Y 1 A LYS 125 ? NZ ? A LYS 146 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -20 ? A MET 1 2 1 Y 1 A ALA -19 ? A ALA 2 3 1 Y 1 A HIS -18 ? A HIS 3 4 1 Y 1 A HIS -17 ? A HIS 4 5 1 Y 1 A HIS -16 ? A HIS 5 6 1 Y 1 A HIS -15 ? A HIS 6 7 1 Y 1 A HIS -14 ? A HIS 7 8 1 Y 1 A HIS -13 ? A HIS 8 9 1 Y 1 A MET -12 ? A MET 9 10 1 Y 1 A GLY -11 ? A GLY 10 11 1 Y 1 A THR -10 ? A THR 11 12 1 Y 1 A LEU -9 ? A LEU 12 13 1 Y 1 A GLU -8 ? A GLU 13 14 1 Y 1 A ALA -7 ? A ALA 14 15 1 Y 1 A GLN -6 ? A GLN 15 16 1 Y 1 A THR -5 ? A THR 16 17 1 Y 1 A GLN -4 ? A GLN 17 18 1 Y 1 A GLY -3 ? A GLY 18 19 1 Y 1 A PRO -2 ? A PRO 19 20 1 Y 1 A GLY -1 ? A GLY 20 21 1 Y 1 A SER 0 ? A SER 21 22 1 Y 1 A MET 1 ? A MET 22 23 1 Y 1 A ASP 131 ? A ASP 152 24 1 Y 1 A ARG 132 ? A ARG 153 25 1 Y 1 A GLY 133 ? A GLY 154 26 1 Y 1 A THR 134 ? A THR 155 27 1 Y 1 A ASN 135 ? A ASN 156 28 1 Y 1 A GLY 136 ? A GLY 157 29 1 Y 1 A PHE 137 ? A PHE 158 30 1 Y 1 A GLY 138 ? A GLY 159 31 1 Y 1 A SER 139 ? A SER 160 32 1 Y 1 A THR 140 ? A THR 161 33 1 Y 1 A GLY 141 ? A GLY 162 34 1 Y 1 A LYS 142 ? A LYS 163 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 GOL C1 C N N 147 GOL O1 O N N 148 GOL C2 C N N 149 GOL O2 O N N 150 GOL C3 C N N 151 GOL O3 O N N 152 GOL H11 H N N 153 GOL H12 H N N 154 GOL HO1 H N N 155 GOL H2 H N N 156 GOL HO2 H N N 157 GOL H31 H N N 158 GOL H32 H N N 159 GOL HO3 H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MET N N N N 254 MET CA C N S 255 MET C C N N 256 MET O O N N 257 MET CB C N N 258 MET CG C N N 259 MET SD S N N 260 MET CE C N N 261 MET OXT O N N 262 MET H H N N 263 MET H2 H N N 264 MET HA H N N 265 MET HB2 H N N 266 MET HB3 H N N 267 MET HG2 H N N 268 MET HG3 H N N 269 MET HE1 H N N 270 MET HE2 H N N 271 MET HE3 H N N 272 MET HXT H N N 273 PHE N N N N 274 PHE CA C N S 275 PHE C C N N 276 PHE O O N N 277 PHE CB C N N 278 PHE CG C Y N 279 PHE CD1 C Y N 280 PHE CD2 C Y N 281 PHE CE1 C Y N 282 PHE CE2 C Y N 283 PHE CZ C Y N 284 PHE OXT O N N 285 PHE H H N N 286 PHE H2 H N N 287 PHE HA H N N 288 PHE HB2 H N N 289 PHE HB3 H N N 290 PHE HD1 H N N 291 PHE HD2 H N N 292 PHE HE1 H N N 293 PHE HE2 H N N 294 PHE HZ H N N 295 PHE HXT H N N 296 PRO N N N N 297 PRO CA C N S 298 PRO C C N N 299 PRO O O N N 300 PRO CB C N N 301 PRO CG C N N 302 PRO CD C N N 303 PRO OXT O N N 304 PRO H H N N 305 PRO HA H N N 306 PRO HB2 H N N 307 PRO HB3 H N N 308 PRO HG2 H N N 309 PRO HG3 H N N 310 PRO HD2 H N N 311 PRO HD3 H N N 312 PRO HXT H N N 313 SER N N N N 314 SER CA C N S 315 SER C C N N 316 SER O O N N 317 SER CB C N N 318 SER OG O N N 319 SER OXT O N N 320 SER H H N N 321 SER H2 H N N 322 SER HA H N N 323 SER HB2 H N N 324 SER HB3 H N N 325 SER HG H N N 326 SER HXT H N N 327 THR N N N N 328 THR CA C N S 329 THR C C N N 330 THR O O N N 331 THR CB C N R 332 THR OG1 O N N 333 THR CG2 C N N 334 THR OXT O N N 335 THR H H N N 336 THR H2 H N N 337 THR HA H N N 338 THR HB H N N 339 THR HG1 H N N 340 THR HG21 H N N 341 THR HG22 H N N 342 THR HG23 H N N 343 THR HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 GOL C1 O1 sing N N 138 GOL C1 C2 sing N N 139 GOL C1 H11 sing N N 140 GOL C1 H12 sing N N 141 GOL O1 HO1 sing N N 142 GOL C2 O2 sing N N 143 GOL C2 C3 sing N N 144 GOL C2 H2 sing N N 145 GOL O2 HO2 sing N N 146 GOL C3 O3 sing N N 147 GOL C3 H31 sing N N 148 GOL C3 H32 sing N N 149 GOL O3 HO3 sing N N 150 HIS N CA sing N N 151 HIS N H sing N N 152 HIS N H2 sing N N 153 HIS CA C sing N N 154 HIS CA CB sing N N 155 HIS CA HA sing N N 156 HIS C O doub N N 157 HIS C OXT sing N N 158 HIS CB CG sing N N 159 HIS CB HB2 sing N N 160 HIS CB HB3 sing N N 161 HIS CG ND1 sing Y N 162 HIS CG CD2 doub Y N 163 HIS ND1 CE1 doub Y N 164 HIS ND1 HD1 sing N N 165 HIS CD2 NE2 sing Y N 166 HIS CD2 HD2 sing N N 167 HIS CE1 NE2 sing Y N 168 HIS CE1 HE1 sing N N 169 HIS NE2 HE2 sing N N 170 HIS OXT HXT sing N N 171 HOH O H1 sing N N 172 HOH O H2 sing N N 173 ILE N CA sing N N 174 ILE N H sing N N 175 ILE N H2 sing N N 176 ILE CA C sing N N 177 ILE CA CB sing N N 178 ILE CA HA sing N N 179 ILE C O doub N N 180 ILE C OXT sing N N 181 ILE CB CG1 sing N N 182 ILE CB CG2 sing N N 183 ILE CB HB sing N N 184 ILE CG1 CD1 sing N N 185 ILE CG1 HG12 sing N N 186 ILE CG1 HG13 sing N N 187 ILE CG2 HG21 sing N N 188 ILE CG2 HG22 sing N N 189 ILE CG2 HG23 sing N N 190 ILE CD1 HD11 sing N N 191 ILE CD1 HD12 sing N N 192 ILE CD1 HD13 sing N N 193 ILE OXT HXT sing N N 194 LEU N CA sing N N 195 LEU N H sing N N 196 LEU N H2 sing N N 197 LEU CA C sing N N 198 LEU CA CB sing N N 199 LEU CA HA sing N N 200 LEU C O doub N N 201 LEU C OXT sing N N 202 LEU CB CG sing N N 203 LEU CB HB2 sing N N 204 LEU CB HB3 sing N N 205 LEU CG CD1 sing N N 206 LEU CG CD2 sing N N 207 LEU CG HG sing N N 208 LEU CD1 HD11 sing N N 209 LEU CD1 HD12 sing N N 210 LEU CD1 HD13 sing N N 211 LEU CD2 HD21 sing N N 212 LEU CD2 HD22 sing N N 213 LEU CD2 HD23 sing N N 214 LEU OXT HXT sing N N 215 LYS N CA sing N N 216 LYS N H sing N N 217 LYS N H2 sing N N 218 LYS CA C sing N N 219 LYS CA CB sing N N 220 LYS CA HA sing N N 221 LYS C O doub N N 222 LYS C OXT sing N N 223 LYS CB CG sing N N 224 LYS CB HB2 sing N N 225 LYS CB HB3 sing N N 226 LYS CG CD sing N N 227 LYS CG HG2 sing N N 228 LYS CG HG3 sing N N 229 LYS CD CE sing N N 230 LYS CD HD2 sing N N 231 LYS CD HD3 sing N N 232 LYS CE NZ sing N N 233 LYS CE HE2 sing N N 234 LYS CE HE3 sing N N 235 LYS NZ HZ1 sing N N 236 LYS NZ HZ2 sing N N 237 LYS NZ HZ3 sing N N 238 LYS OXT HXT sing N N 239 MET N CA sing N N 240 MET N H sing N N 241 MET N H2 sing N N 242 MET CA C sing N N 243 MET CA CB sing N N 244 MET CA HA sing N N 245 MET C O doub N N 246 MET C OXT sing N N 247 MET CB CG sing N N 248 MET CB HB2 sing N N 249 MET CB HB3 sing N N 250 MET CG SD sing N N 251 MET CG HG2 sing N N 252 MET CG HG3 sing N N 253 MET SD CE sing N N 254 MET CE HE1 sing N N 255 MET CE HE2 sing N N 256 MET CE HE3 sing N N 257 MET OXT HXT sing N N 258 PHE N CA sing N N 259 PHE N H sing N N 260 PHE N H2 sing N N 261 PHE CA C sing N N 262 PHE CA CB sing N N 263 PHE CA HA sing N N 264 PHE C O doub N N 265 PHE C OXT sing N N 266 PHE CB CG sing N N 267 PHE CB HB2 sing N N 268 PHE CB HB3 sing N N 269 PHE CG CD1 doub Y N 270 PHE CG CD2 sing Y N 271 PHE CD1 CE1 sing Y N 272 PHE CD1 HD1 sing N N 273 PHE CD2 CE2 doub Y N 274 PHE CD2 HD2 sing N N 275 PHE CE1 CZ doub Y N 276 PHE CE1 HE1 sing N N 277 PHE CE2 CZ sing Y N 278 PHE CE2 HE2 sing N N 279 PHE CZ HZ sing N N 280 PHE OXT HXT sing N N 281 PRO N CA sing N N 282 PRO N CD sing N N 283 PRO N H sing N N 284 PRO CA C sing N N 285 PRO CA CB sing N N 286 PRO CA HA sing N N 287 PRO C O doub N N 288 PRO C OXT sing N N 289 PRO CB CG sing N N 290 PRO CB HB2 sing N N 291 PRO CB HB3 sing N N 292 PRO CG CD sing N N 293 PRO CG HG2 sing N N 294 PRO CG HG3 sing N N 295 PRO CD HD2 sing N N 296 PRO CD HD3 sing N N 297 PRO OXT HXT sing N N 298 SER N CA sing N N 299 SER N H sing N N 300 SER N H2 sing N N 301 SER CA C sing N N 302 SER CA CB sing N N 303 SER CA HA sing N N 304 SER C O doub N N 305 SER C OXT sing N N 306 SER CB OG sing N N 307 SER CB HB2 sing N N 308 SER CB HB3 sing N N 309 SER OG HG sing N N 310 SER OXT HXT sing N N 311 THR N CA sing N N 312 THR N H sing N N 313 THR N H2 sing N N 314 THR CA C sing N N 315 THR CA CB sing N N 316 THR CA HA sing N N 317 THR C O doub N N 318 THR C OXT sing N N 319 THR CB OG1 sing N N 320 THR CB CG2 sing N N 321 THR CB HB sing N N 322 THR OG1 HG1 sing N N 323 THR CG2 HG21 sing N N 324 THR CG2 HG22 sing N N 325 THR CG2 HG23 sing N N 326 THR OXT HXT sing N N 327 TYR N CA sing N N 328 TYR N H sing N N 329 TYR N H2 sing N N 330 TYR CA C sing N N 331 TYR CA CB sing N N 332 TYR CA HA sing N N 333 TYR C O doub N N 334 TYR C OXT sing N N 335 TYR CB CG sing N N 336 TYR CB HB2 sing N N 337 TYR CB HB3 sing N N 338 TYR CG CD1 doub Y N 339 TYR CG CD2 sing Y N 340 TYR CD1 CE1 sing Y N 341 TYR CD1 HD1 sing N N 342 TYR CD2 CE2 doub Y N 343 TYR CD2 HD2 sing N N 344 TYR CE1 CZ doub Y N 345 TYR CE1 HE1 sing N N 346 TYR CE2 CZ sing Y N 347 TYR CE2 HE2 sing N N 348 TYR CZ OH sing N N 349 TYR OH HH sing N N 350 TYR OXT HXT sing N N 351 VAL N CA sing N N 352 VAL N H sing N N 353 VAL N H2 sing N N 354 VAL CA C sing N N 355 VAL CA CB sing N N 356 VAL CA HA sing N N 357 VAL C O doub N N 358 VAL C OXT sing N N 359 VAL CB CG1 sing N N 360 VAL CB CG2 sing N N 361 VAL CB HB sing N N 362 VAL CG1 HG11 sing N N 363 VAL CG1 HG12 sing N N 364 VAL CG1 HG13 sing N N 365 VAL CG2 HG21 sing N N 366 VAL CG2 HG22 sing N N 367 VAL CG2 HG23 sing N N 368 VAL OXT HXT sing N N 369 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HVA _pdbx_initial_refinement_model.details 'pdb entry 2hva modified with CCP4 program CHAINSAW' #