HEADER TRANSFERASE 10-FEB-10 3LR4 TITLE PERIPLASMIC DOMAIN OF THE RISS SENSOR PROTEIN FROM BURKHOLDERIA TITLE 2 PSEUDOMALLEI, BARIUM PHASED AT LOW PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 38 TO 158; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS PSEUDOMALLEI; SOURCE 4 ORGANISM_TAXID: 28450; SOURCE 5 STRAIN: 1710B; SOURCE 6 GENE: BPSL2095; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS NIAID, SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 2 DISEASE, BURKHOLDERIA, MELIOIDOSIS, PH, SENSOR, HISTIDINE KINASE, KEYWDS 3 BARIUM PHASED, ATP-BINDING, KINASE, MEMBRANE, NUCLEOTIDE-BINDING, KEYWDS 4 PHOSPHOPROTEIN, TRANSFERASE, TRANSMEMBRANE, TWO-COMPONENT REGULATORY KEYWDS 5 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 21-FEB-24 3LR4 1 REMARK SEQADV LINK REVDAT 1 16-JUN-10 3LR4 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH,B.L.STAKER,I.PHAN,P.MYLER,R.STACY, JRNL AUTH 2 L.STEWART,S.I.MILLER, JRNL AUTH 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 4 (SSGCID) JRNL TITL STRUCTURAL BASIS FOR PH SENSING BY THE PERIPLASMIC DOMAIN OF JRNL TITL 2 THE RISS HISTIDINE KINASE FROM BURKHOLDERIA PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 826 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 876 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1207 ; 1.385 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 117 ; 6.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;32.253 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 150 ;12.443 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.021 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 145 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 676 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 541 ; 0.805 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 885 ; 1.496 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 335 ; 2.345 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 315 ; 3.970 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6067 25.1925 6.3183 REMARK 3 T TENSOR REMARK 3 T11: 0.0347 T22: 0.0710 REMARK 3 T33: 0.0367 T12: 0.0311 REMARK 3 T13: -0.0090 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.4825 L22: 0.2224 REMARK 3 L33: 1.1388 L12: -0.0453 REMARK 3 L13: -1.2961 L23: 0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.0222 S13: -0.0511 REMARK 3 S21: -0.0060 S22: -0.0409 S23: 0.0052 REMARK 3 S31: 0.0020 S32: -0.0331 S33: 0.0555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3LR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22306 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 18.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.290 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.17 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GROWTH: 15% PEG 3350, 0.1 M SUCCINATE; REMARK 280 SOAK AND CRYO-PROTECTION: 30% PEG 3350, 0.45 M BACL2, 0.1 M NA REMARK 280 CITRATE PH 4.5, CRYSTAL TRACKING ID 206692G7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.60000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.30000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.30000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 MET A 30 REMARK 465 PHE A 31 REMARK 465 ARG A 32 REMARK 465 VAL A 33 REMARK 465 ILE A 34 REMARK 465 GLU A 35 REMARK 465 ARG A 36 REMARK 465 GLU A 37 REMARK 465 PRO A 38 REMARK 465 ARG A 39 REMARK 465 ASP A 144 REMARK 465 GLN A 145 REMARK 465 LEU A 146 REMARK 465 ASP A 147 REMARK 465 THR A 148 REMARK 465 VAL A 149 REMARK 465 THR A 150 REMARK 465 GLY A 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 139 CB VAL A 139 CG2 -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 97 -118.72 55.04 REMARK 500 ASP A 133 -123.69 55.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 152 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 108 O REMARK 620 2 HOH A 159 O 71.9 REMARK 620 3 HOH A 192 O 93.8 81.0 REMARK 620 4 HOH A 237 O 64.6 74.8 151.5 REMARK 620 5 HOH A 238 O 64.6 136.2 105.7 82.5 REMARK 620 6 HOH A 239 O 108.7 57.6 120.8 56.4 133.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 153 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 134 O REMARK 620 2 ASP A 136 OD2 87.8 REMARK 620 3 HOH A 172 O 64.6 140.4 REMARK 620 4 HOH A 228 O 147.6 65.1 126.6 REMARK 620 5 HOH A 277 O 155.0 115.7 90.7 51.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 154 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 134 O REMARK 620 2 ASP A 136 OD2 90.7 REMARK 620 3 HOH A 188 O 71.8 152.6 REMARK 620 4 HOH A 196 O 59.9 119.5 70.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 155 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 188 O REMARK 620 2 HOH A 251 O 137.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LR0 RELATED DB: PDB REMARK 900 IODIDE PHASED AT LOW PH REMARK 900 RELATED ID: 3LR3 RELATED DB: PDB REMARK 900 NATIVE AT LOW PH REMARK 900 RELATED ID: 3LR5 RELATED DB: PDB REMARK 900 NEUTRAL PH STRUCTURE REMARK 900 RELATED ID: BUPSA.00863.I RELATED DB: TARGETDB REMARK 900 FULL LENGTH PROTEIN OF RISS DBREF 3LR4 A 31 151 UNP Q63T74 Q63T74_BURPS 38 158 SEQADV 3LR4 GLY A 26 UNP Q63T74 EXPRESSION TAG SEQADV 3LR4 PRO A 27 UNP Q63T74 EXPRESSION TAG SEQADV 3LR4 GLY A 28 UNP Q63T74 EXPRESSION TAG SEQADV 3LR4 SER A 29 UNP Q63T74 EXPRESSION TAG SEQADV 3LR4 MET A 30 UNP Q63T74 EXPRESSION TAG SEQRES 1 A 126 GLY PRO GLY SER MET PHE ARG VAL ILE GLU ARG GLU PRO SEQRES 2 A 126 ARG ALA GLN ARG VAL ALA LEU GLN LEU VAL ALA ILE VAL SEQRES 3 A 126 LYS LEU THR ARG THR ALA LEU LEU TYR SER ASP PRO ASP SEQRES 4 A 126 LEU ARG ARG ALA LEU LEU GLN ASP LEU GLU SER ASN GLU SEQRES 5 A 126 GLY VAL ARG VAL TYR PRO ARG GLU LYS THR ASP LYS PHE SEQRES 6 A 126 LYS LEU GLN PRO ASP GLU SER VAL ASN ARG LEU ILE GLU SEQRES 7 A 126 HIS ASP ILE ARG SER ARG LEU GLY ASP ASP THR VAL ILE SEQRES 8 A 126 ALA GLN SER VAL ASN ASP ILE PRO GLY VAL TRP ILE SER SEQRES 9 A 126 PHE LYS ILE ASP ASP ASP ASP TYR TRP VAL ALA LEU ASP SEQRES 10 A 126 ARG ASP GLN LEU ASP THR VAL THR GLY HET BA A 152 1 HET BA A 153 1 HET BA A 154 1 HET BA A 155 1 HET BA A 156 1 HET CL A 157 1 HET CL A 158 1 HETNAM BA BARIUM ION HETNAM CL CHLORIDE ION FORMUL 2 BA 5(BA 2+) FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *144(H2 O) HELIX 1 1 ALA A 40 TYR A 60 1 21 HELIX 2 2 ASP A 62 ASP A 64 5 3 HELIX 3 3 LEU A 65 GLY A 78 1 14 HELIX 4 4 VAL A 98 GLY A 111 1 14 SHEET 1 A 5 ARG A 80 PRO A 83 0 SHEET 2 A 5 ASP A 135 LEU A 141 -1 O ALA A 140 N ARG A 80 SHEET 3 A 5 ILE A 123 ILE A 132 -1 N PHE A 130 O TYR A 137 SHEET 4 A 5 ILE A 116 VAL A 120 -1 N ALA A 117 O TRP A 127 SHEET 5 A 5 PHE A 90 LYS A 91 -1 N LYS A 91 O GLN A 118 LINK O SER A 108 BA BA A 152 1555 1555 2.89 LINK O ASP A 134 BA BA A 153 1555 1555 2.93 LINK O ASP A 134 BA BA A 154 1555 1555 2.90 LINK OD2 ASP A 136 BA BA A 153 1555 1555 2.64 LINK OD2 ASP A 136 BA BA A 154 1555 1555 2.52 LINK BA BA A 152 O HOH A 159 1555 1555 2.78 LINK BA BA A 152 O HOH A 192 1555 1555 2.88 LINK BA BA A 152 O HOH A 237 1555 1555 2.65 LINK BA BA A 152 O HOH A 238 1555 1555 2.62 LINK BA BA A 152 O HOH A 239 1555 1555 3.14 LINK BA BA A 153 O HOH A 172 1555 1555 3.33 LINK BA BA A 153 O HOH A 228 1555 1555 3.48 LINK BA BA A 153 O HOH A 277 1555 1555 2.55 LINK BA BA A 154 O HOH A 188 1555 1555 2.75 LINK BA BA A 154 O HOH A 196 1555 1555 3.01 LINK BA BA A 155 O HOH A 188 1555 1555 2.64 LINK BA BA A 155 O HOH A 251 1555 1555 3.18 LINK BA BA A 156 O HOH A 250 1555 1555 2.73 SITE 1 AC1 5 SER A 108 HOH A 159 HOH A 192 HOH A 237 SITE 2 AC1 5 HOH A 238 SITE 1 AC2 6 ASP A 134 ASP A 136 BA A 154 HOH A 182 SITE 2 AC2 6 HOH A 196 HOH A 277 SITE 1 AC3 6 ASP A 134 ASP A 136 BA A 153 BA A 155 SITE 2 AC3 6 HOH A 188 HOH A 196 SITE 1 AC4 4 LYS A 131 BA A 154 BA A 156 HOH A 188 SITE 1 AC5 4 BA A 155 HOH A 167 HOH A 250 HOH A 251 SITE 1 AC6 3 ARG A 67 HOH A 217 HOH A 259 SITE 1 AC7 5 LYS A 91 SER A 119 ASN A 121 ASP A 122 SITE 2 AC7 5 HOH A 265 CRYST1 57.780 57.780 75.900 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017307 0.009992 0.000000 0.00000 SCALE2 0.000000 0.019984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013175 0.00000