HEADER HYDROLASE 11-FEB-10 3LRM TITLE STRUCTURE OF ALFA-GALACTOSIDASE FROM SACCHAROMYCES CEREVISIAE WITH TITLE 2 RAFFINOSE CAVEAT 3LRM NAG E 1 HAS WRONG CHIRALITY AT ATOM C1 NAG G 1 HAS WRONG CAVEAT 2 3LRM CHIRALITY AT ATOM C1 NAG I 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GALACTOSIDASE 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ALPHA-D-GALACTOSIDE GALACTOHYDROLASE 1, MELIBIASE 1; COMPND 5 EC: 3.2.1.22; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: MEL1; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: YEPFLAG1 KEYWDS ALPHA-GALACTOSIDASE, TETRAMER, GH27, RAFFINOSE, GLYCOPROTEIN, KEYWDS 2 GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FERNANDEZ-LEIRO,A.PEREIRA-RODRIGUEZ,M.E.CERDAN,M.BECERRA,J.SANZ- AUTHOR 2 APARICIO REVDAT 4 13-OCT-21 3LRM 1 SEQADV HETSYN REVDAT 3 29-JUL-20 3LRM 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HET HETNAM FORMUL LINK REVDAT 3 3 1 SITE ATOM REVDAT 2 26-JAN-11 3LRM 1 JRNL REVDAT 1 30-JUN-10 3LRM 0 JRNL AUTH R.FERNANDEZ-LEIRO,A.PEREIRA-RODRIGUEZ,M.E.CERDAN,M.BECERRA, JRNL AUTH 2 J.SANZ-APARICIO JRNL TITL STRUCTURAL ANALYSIS OF SACCHAROMYCES CEREVISIAE JRNL TITL 2 ALPHA-GALACTOSIDASE AND ITS COMPLEXES WITH NATURAL JRNL TITL 3 SUBSTRATES REVEALS NEW INSIGHTS INTO SUBSTRATE SPECIFICITY JRNL TITL 4 OF GH27 GLYCOSIDASES. JRNL REF J.BIOL.CHEM. V. 285 28020 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20592022 JRNL DOI 10.1074/JBC.M110.144584 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2781 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3813 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 14060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 430 REMARK 3 SOLVENT ATOMS : 1022 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.425 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.324 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.899 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.851 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 14889 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 20247 ; 1.057 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1804 ; 5.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 716 ;36.787 ;24.749 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2236 ;14.520 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;15.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2170 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11516 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 8924 ; 0.179 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 14240 ; 0.360 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5965 ; 0.625 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6007 ; 1.088 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 19 A 470 1 REMARK 3 1 B 19 B 470 1 REMARK 3 1 C 19 C 470 1 REMARK 3 1 D 19 D 470 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3515 ; 0.020 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 B (A): 3515 ; 0.020 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 C (A): 3515 ; 0.040 ; 0.050 REMARK 3 TIGHT POSITIONAL 1 D (A): 3515 ; 0.020 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 3515 ; 0.040 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 3515 ; 0.040 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 3515 ; 0.040 ; 0.500 REMARK 3 TIGHT THERMAL 1 D (A**2): 3515 ; 0.040 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 3LRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 94.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : 0.43800 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DEGLYCOSYLATED SAMPLE. 19% PEG3350, REMARK 280 0.1 M BISTRIS, 0.2 M SCNK, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.58500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ALA A 3 REMARK 465 PHE A 4 REMARK 465 TYR A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 CYS A 10 REMARK 465 ILE A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 LYS A 14 REMARK 465 GLY A 15 REMARK 465 VAL A 16 REMARK 465 PHE A 17 REMARK 465 GLY A 18 REMARK 465 SER A 471 REMARK 465 ASP A 472 REMARK 465 TYR A 473 REMARK 465 LYS A 474 REMARK 465 ASP A 475 REMARK 465 ASP A 476 REMARK 465 ASP A 477 REMARK 465 ASP A 478 REMARK 465 LYS A 479 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ALA B 3 REMARK 465 PHE B 4 REMARK 465 TYR B 5 REMARK 465 PHE B 6 REMARK 465 LEU B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 CYS B 10 REMARK 465 ILE B 11 REMARK 465 SER B 12 REMARK 465 LEU B 13 REMARK 465 LYS B 14 REMARK 465 GLY B 15 REMARK 465 VAL B 16 REMARK 465 PHE B 17 REMARK 465 GLY B 18 REMARK 465 SER B 471 REMARK 465 ASP B 472 REMARK 465 TYR B 473 REMARK 465 LYS B 474 REMARK 465 ASP B 475 REMARK 465 ASP B 476 REMARK 465 ASP B 477 REMARK 465 ASP B 478 REMARK 465 LYS B 479 REMARK 465 MET C 1 REMARK 465 PHE C 2 REMARK 465 ALA C 3 REMARK 465 PHE C 4 REMARK 465 TYR C 5 REMARK 465 PHE C 6 REMARK 465 LEU C 7 REMARK 465 THR C 8 REMARK 465 ALA C 9 REMARK 465 CYS C 10 REMARK 465 ILE C 11 REMARK 465 SER C 12 REMARK 465 LEU C 13 REMARK 465 LYS C 14 REMARK 465 GLY C 15 REMARK 465 VAL C 16 REMARK 465 PHE C 17 REMARK 465 GLY C 18 REMARK 465 SER C 471 REMARK 465 ASP C 472 REMARK 465 TYR C 473 REMARK 465 LYS C 474 REMARK 465 ASP C 475 REMARK 465 ASP C 476 REMARK 465 ASP C 477 REMARK 465 ASP C 478 REMARK 465 LYS C 479 REMARK 465 MET D 1 REMARK 465 PHE D 2 REMARK 465 ALA D 3 REMARK 465 PHE D 4 REMARK 465 TYR D 5 REMARK 465 PHE D 6 REMARK 465 LEU D 7 REMARK 465 THR D 8 REMARK 465 ALA D 9 REMARK 465 CYS D 10 REMARK 465 ILE D 11 REMARK 465 SER D 12 REMARK 465 LEU D 13 REMARK 465 LYS D 14 REMARK 465 GLY D 15 REMARK 465 VAL D 16 REMARK 465 PHE D 17 REMARK 465 GLY D 18 REMARK 465 SER D 471 REMARK 465 ASP D 472 REMARK 465 TYR D 473 REMARK 465 LYS D 474 REMARK 465 ASP D 475 REMARK 465 ASP D 476 REMARK 465 ASP D 477 REMARK 465 ASP D 478 REMARK 465 LYS D 479 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG LYS A 434 NH1 ARG B 438 2454 1.84 REMARK 500 CB SER A 433 OD1 ASP B 436 2454 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 38 -20.00 -46.02 REMARK 500 ALA A 41 -128.43 44.14 REMARK 500 TYR A 66 69.03 -69.57 REMARK 500 ASP A 72 -140.77 -92.89 REMARK 500 ASP A 262 162.12 78.25 REMARK 500 ASN A 298 34.54 -140.08 REMARK 500 ARG A 412 -0.15 65.33 REMARK 500 ASN A 435 41.28 71.33 REMARK 500 ASN A 450 -4.33 68.91 REMARK 500 ALA B 41 -126.59 44.00 REMARK 500 TYR B 66 67.87 -68.55 REMARK 500 ASP B 72 -141.17 -93.14 REMARK 500 GLN B 156 59.09 -91.02 REMARK 500 ASP B 262 161.86 78.74 REMARK 500 ARG B 412 -0.16 65.62 REMARK 500 ASN B 435 38.25 73.30 REMARK 500 ASN B 450 -5.02 68.42 REMARK 500 ALA C 41 -125.64 42.53 REMARK 500 ASP C 72 -140.11 -95.95 REMARK 500 GLN C 156 57.12 -90.29 REMARK 500 ASP C 262 161.20 79.30 REMARK 500 ARG C 412 -1.08 65.40 REMARK 500 ASN C 435 39.40 71.72 REMARK 500 ASN C 450 -6.42 67.84 REMARK 500 ALA D 41 -127.66 45.69 REMARK 500 ASP D 72 -141.51 -95.88 REMARK 500 GLN D 156 58.47 -91.06 REMARK 500 ASP D 262 161.96 77.40 REMARK 500 ASN D 298 32.42 -140.19 REMARK 500 PHE D 377 74.02 -100.21 REMARK 500 ARG D 412 -1.57 63.05 REMARK 500 ASN D 435 39.28 72.09 REMARK 500 ASN D 450 -6.17 69.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LRK RELATED DB: PDB REMARK 900 NATIVE ALPHA-GALACTOSIDASE FROM SACCHAROMYCES CEREVISIAE REMARK 900 RELATED ID: 3LRL RELATED DB: PDB REMARK 900 NATIVE ALPHA-GALACTOSIDASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED REMARK 900 WITH MELIBIOSE DBREF 3LRM A 1 471 UNP P04824 MEL1_YEAST 1 471 DBREF 3LRM B 1 471 UNP P04824 MEL1_YEAST 1 471 DBREF 3LRM C 1 471 UNP P04824 MEL1_YEAST 1 471 DBREF 3LRM D 1 471 UNP P04824 MEL1_YEAST 1 471 SEQADV 3LRM ALA A 149 UNP P04824 ASP 149 ENGINEERED MUTATION SEQADV 3LRM VAL A 181 UNP P04824 ILE 181 ENGINEERED MUTATION SEQADV 3LRM ASP A 472 UNP P04824 EXPRESSION TAG SEQADV 3LRM TYR A 473 UNP P04824 EXPRESSION TAG SEQADV 3LRM LYS A 474 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP A 475 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP A 476 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP A 477 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP A 478 UNP P04824 EXPRESSION TAG SEQADV 3LRM LYS A 479 UNP P04824 EXPRESSION TAG SEQADV 3LRM ALA B 149 UNP P04824 ASP 149 ENGINEERED MUTATION SEQADV 3LRM VAL B 181 UNP P04824 ILE 181 ENGINEERED MUTATION SEQADV 3LRM ASP B 472 UNP P04824 EXPRESSION TAG SEQADV 3LRM TYR B 473 UNP P04824 EXPRESSION TAG SEQADV 3LRM LYS B 474 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP B 475 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP B 476 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP B 477 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP B 478 UNP P04824 EXPRESSION TAG SEQADV 3LRM LYS B 479 UNP P04824 EXPRESSION TAG SEQADV 3LRM ALA C 149 UNP P04824 ASP 149 ENGINEERED MUTATION SEQADV 3LRM VAL C 181 UNP P04824 ILE 181 ENGINEERED MUTATION SEQADV 3LRM ASP C 472 UNP P04824 EXPRESSION TAG SEQADV 3LRM TYR C 473 UNP P04824 EXPRESSION TAG SEQADV 3LRM LYS C 474 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP C 475 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP C 476 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP C 477 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP C 478 UNP P04824 EXPRESSION TAG SEQADV 3LRM LYS C 479 UNP P04824 EXPRESSION TAG SEQADV 3LRM ALA D 149 UNP P04824 ASP 149 ENGINEERED MUTATION SEQADV 3LRM VAL D 181 UNP P04824 ILE 181 ENGINEERED MUTATION SEQADV 3LRM ASP D 472 UNP P04824 EXPRESSION TAG SEQADV 3LRM TYR D 473 UNP P04824 EXPRESSION TAG SEQADV 3LRM LYS D 474 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP D 475 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP D 476 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP D 477 UNP P04824 EXPRESSION TAG SEQADV 3LRM ASP D 478 UNP P04824 EXPRESSION TAG SEQADV 3LRM LYS D 479 UNP P04824 EXPRESSION TAG SEQRES 1 A 479 MET PHE ALA PHE TYR PHE LEU THR ALA CYS ILE SER LEU SEQRES 2 A 479 LYS GLY VAL PHE GLY VAL SER PRO SER TYR ASN GLY LEU SEQRES 3 A 479 GLY LEU THR PRO GLN MET GLY TRP ASP ASN TRP ASN THR SEQRES 4 A 479 PHE ALA CYS ASP VAL SER GLU GLN LEU LEU LEU ASP THR SEQRES 5 A 479 ALA ASP ARG ILE SER ASP LEU GLY LEU LYS ASP MET GLY SEQRES 6 A 479 TYR LYS TYR ILE ILE LEU ASP ASP CYS TRP SER SER GLY SEQRES 7 A 479 ARG ASP SER ASP GLY PHE LEU VAL ALA ASP GLU GLN LYS SEQRES 8 A 479 PHE PRO ASN GLY MET GLY HIS VAL ALA ASP HIS LEU HIS SEQRES 9 A 479 ASN ASN SER PHE LEU PHE GLY MET TYR SER SER ALA GLY SEQRES 10 A 479 GLU TYR THR CYS ALA GLY TYR PRO GLY SER LEU GLY ARG SEQRES 11 A 479 GLU GLU GLU ASP ALA GLN PHE PHE ALA ASN ASN ARG VAL SEQRES 12 A 479 ASP TYR LEU LYS TYR ALA ASN CYS TYR ASN LYS GLY GLN SEQRES 13 A 479 PHE GLY THR PRO GLU ILE SER TYR HIS ARG TYR LYS ALA SEQRES 14 A 479 MET SER ASP ALA LEU ASN LYS THR GLY ARG PRO VAL PHE SEQRES 15 A 479 TYR SER LEU CYS ASN TRP GLY GLN ASP LEU THR PHE TYR SEQRES 16 A 479 TRP GLY SER GLY ILE ALA ASN SER TRP ARG MET SER GLY SEQRES 17 A 479 ASP VAL THR ALA GLU PHE THR ARG PRO ASP SER ARG CYS SEQRES 18 A 479 PRO CYS ASP GLY ASP GLU TYR ASP CYS LYS TYR ALA GLY SEQRES 19 A 479 PHE HIS CYS SER ILE MET ASN ILE LEU ASN LYS ALA ALA SEQRES 20 A 479 PRO MET GLY GLN ASN ALA GLY VAL GLY GLY TRP ASN ASP SEQRES 21 A 479 LEU ASP ASN LEU GLU VAL GLY VAL GLY ASN LEU THR ASP SEQRES 22 A 479 ASP GLU GLU LYS ALA HIS PHE SER MET TRP ALA MET VAL SEQRES 23 A 479 LYS SER PRO LEU ILE ILE GLY ALA ASN VAL ASN ASN LEU SEQRES 24 A 479 LYS ALA SER SER TYR SER ILE TYR SER GLN ALA SER VAL SEQRES 25 A 479 ILE ALA ILE ASN GLN ASP SER ASN GLY ILE PRO ALA THR SEQRES 26 A 479 ARG VAL TRP ARG TYR TYR VAL SER ASP THR ASP GLU TYR SEQRES 27 A 479 GLY GLN GLY GLU ILE GLN MET TRP SER GLY PRO LEU ASP SEQRES 28 A 479 ASN GLY ASP GLN VAL VAL ALA LEU LEU ASN GLY GLY SER SEQRES 29 A 479 VAL SER ARG PRO MET ASN THR THR LEU GLU GLU ILE PHE SEQRES 30 A 479 PHE ASP SER ASN LEU GLY SER LYS LYS LEU THR SER THR SEQRES 31 A 479 TRP ASP ILE TYR ASP LEU TRP ALA ASN ARG VAL ASP ASN SEQRES 32 A 479 SER THR ALA SER ALA ILE LEU GLY ARG ASN LYS THR ALA SEQRES 33 A 479 THR GLY ILE LEU TYR ASN ALA THR GLU GLN SER TYR LYS SEQRES 34 A 479 ASP GLY LEU SER LYS ASN ASP THR ARG LEU PHE GLY GLN SEQRES 35 A 479 LYS ILE GLY SER LEU SER PRO ASN ALA ILE LEU ASN THR SEQRES 36 A 479 THR VAL PRO ALA HIS GLY ILE ALA PHE TYR ARG LEU ARG SEQRES 37 A 479 PRO SER SER ASP TYR LYS ASP ASP ASP ASP LYS SEQRES 1 B 479 MET PHE ALA PHE TYR PHE LEU THR ALA CYS ILE SER LEU SEQRES 2 B 479 LYS GLY VAL PHE GLY VAL SER PRO SER TYR ASN GLY LEU SEQRES 3 B 479 GLY LEU THR PRO GLN MET GLY TRP ASP ASN TRP ASN THR SEQRES 4 B 479 PHE ALA CYS ASP VAL SER GLU GLN LEU LEU LEU ASP THR SEQRES 5 B 479 ALA ASP ARG ILE SER ASP LEU GLY LEU LYS ASP MET GLY SEQRES 6 B 479 TYR LYS TYR ILE ILE LEU ASP ASP CYS TRP SER SER GLY SEQRES 7 B 479 ARG ASP SER ASP GLY PHE LEU VAL ALA ASP GLU GLN LYS SEQRES 8 B 479 PHE PRO ASN GLY MET GLY HIS VAL ALA ASP HIS LEU HIS SEQRES 9 B 479 ASN ASN SER PHE LEU PHE GLY MET TYR SER SER ALA GLY SEQRES 10 B 479 GLU TYR THR CYS ALA GLY TYR PRO GLY SER LEU GLY ARG SEQRES 11 B 479 GLU GLU GLU ASP ALA GLN PHE PHE ALA ASN ASN ARG VAL SEQRES 12 B 479 ASP TYR LEU LYS TYR ALA ASN CYS TYR ASN LYS GLY GLN SEQRES 13 B 479 PHE GLY THR PRO GLU ILE SER TYR HIS ARG TYR LYS ALA SEQRES 14 B 479 MET SER ASP ALA LEU ASN LYS THR GLY ARG PRO VAL PHE SEQRES 15 B 479 TYR SER LEU CYS ASN TRP GLY GLN ASP LEU THR PHE TYR SEQRES 16 B 479 TRP GLY SER GLY ILE ALA ASN SER TRP ARG MET SER GLY SEQRES 17 B 479 ASP VAL THR ALA GLU PHE THR ARG PRO ASP SER ARG CYS SEQRES 18 B 479 PRO CYS ASP GLY ASP GLU TYR ASP CYS LYS TYR ALA GLY SEQRES 19 B 479 PHE HIS CYS SER ILE MET ASN ILE LEU ASN LYS ALA ALA SEQRES 20 B 479 PRO MET GLY GLN ASN ALA GLY VAL GLY GLY TRP ASN ASP SEQRES 21 B 479 LEU ASP ASN LEU GLU VAL GLY VAL GLY ASN LEU THR ASP SEQRES 22 B 479 ASP GLU GLU LYS ALA HIS PHE SER MET TRP ALA MET VAL SEQRES 23 B 479 LYS SER PRO LEU ILE ILE GLY ALA ASN VAL ASN ASN LEU SEQRES 24 B 479 LYS ALA SER SER TYR SER ILE TYR SER GLN ALA SER VAL SEQRES 25 B 479 ILE ALA ILE ASN GLN ASP SER ASN GLY ILE PRO ALA THR SEQRES 26 B 479 ARG VAL TRP ARG TYR TYR VAL SER ASP THR ASP GLU TYR SEQRES 27 B 479 GLY GLN GLY GLU ILE GLN MET TRP SER GLY PRO LEU ASP SEQRES 28 B 479 ASN GLY ASP GLN VAL VAL ALA LEU LEU ASN GLY GLY SER SEQRES 29 B 479 VAL SER ARG PRO MET ASN THR THR LEU GLU GLU ILE PHE SEQRES 30 B 479 PHE ASP SER ASN LEU GLY SER LYS LYS LEU THR SER THR SEQRES 31 B 479 TRP ASP ILE TYR ASP LEU TRP ALA ASN ARG VAL ASP ASN SEQRES 32 B 479 SER THR ALA SER ALA ILE LEU GLY ARG ASN LYS THR ALA SEQRES 33 B 479 THR GLY ILE LEU TYR ASN ALA THR GLU GLN SER TYR LYS SEQRES 34 B 479 ASP GLY LEU SER LYS ASN ASP THR ARG LEU PHE GLY GLN SEQRES 35 B 479 LYS ILE GLY SER LEU SER PRO ASN ALA ILE LEU ASN THR SEQRES 36 B 479 THR VAL PRO ALA HIS GLY ILE ALA PHE TYR ARG LEU ARG SEQRES 37 B 479 PRO SER SER ASP TYR LYS ASP ASP ASP ASP LYS SEQRES 1 C 479 MET PHE ALA PHE TYR PHE LEU THR ALA CYS ILE SER LEU SEQRES 2 C 479 LYS GLY VAL PHE GLY VAL SER PRO SER TYR ASN GLY LEU SEQRES 3 C 479 GLY LEU THR PRO GLN MET GLY TRP ASP ASN TRP ASN THR SEQRES 4 C 479 PHE ALA CYS ASP VAL SER GLU GLN LEU LEU LEU ASP THR SEQRES 5 C 479 ALA ASP ARG ILE SER ASP LEU GLY LEU LYS ASP MET GLY SEQRES 6 C 479 TYR LYS TYR ILE ILE LEU ASP ASP CYS TRP SER SER GLY SEQRES 7 C 479 ARG ASP SER ASP GLY PHE LEU VAL ALA ASP GLU GLN LYS SEQRES 8 C 479 PHE PRO ASN GLY MET GLY HIS VAL ALA ASP HIS LEU HIS SEQRES 9 C 479 ASN ASN SER PHE LEU PHE GLY MET TYR SER SER ALA GLY SEQRES 10 C 479 GLU TYR THR CYS ALA GLY TYR PRO GLY SER LEU GLY ARG SEQRES 11 C 479 GLU GLU GLU ASP ALA GLN PHE PHE ALA ASN ASN ARG VAL SEQRES 12 C 479 ASP TYR LEU LYS TYR ALA ASN CYS TYR ASN LYS GLY GLN SEQRES 13 C 479 PHE GLY THR PRO GLU ILE SER TYR HIS ARG TYR LYS ALA SEQRES 14 C 479 MET SER ASP ALA LEU ASN LYS THR GLY ARG PRO VAL PHE SEQRES 15 C 479 TYR SER LEU CYS ASN TRP GLY GLN ASP LEU THR PHE TYR SEQRES 16 C 479 TRP GLY SER GLY ILE ALA ASN SER TRP ARG MET SER GLY SEQRES 17 C 479 ASP VAL THR ALA GLU PHE THR ARG PRO ASP SER ARG CYS SEQRES 18 C 479 PRO CYS ASP GLY ASP GLU TYR ASP CYS LYS TYR ALA GLY SEQRES 19 C 479 PHE HIS CYS SER ILE MET ASN ILE LEU ASN LYS ALA ALA SEQRES 20 C 479 PRO MET GLY GLN ASN ALA GLY VAL GLY GLY TRP ASN ASP SEQRES 21 C 479 LEU ASP ASN LEU GLU VAL GLY VAL GLY ASN LEU THR ASP SEQRES 22 C 479 ASP GLU GLU LYS ALA HIS PHE SER MET TRP ALA MET VAL SEQRES 23 C 479 LYS SER PRO LEU ILE ILE GLY ALA ASN VAL ASN ASN LEU SEQRES 24 C 479 LYS ALA SER SER TYR SER ILE TYR SER GLN ALA SER VAL SEQRES 25 C 479 ILE ALA ILE ASN GLN ASP SER ASN GLY ILE PRO ALA THR SEQRES 26 C 479 ARG VAL TRP ARG TYR TYR VAL SER ASP THR ASP GLU TYR SEQRES 27 C 479 GLY GLN GLY GLU ILE GLN MET TRP SER GLY PRO LEU ASP SEQRES 28 C 479 ASN GLY ASP GLN VAL VAL ALA LEU LEU ASN GLY GLY SER SEQRES 29 C 479 VAL SER ARG PRO MET ASN THR THR LEU GLU GLU ILE PHE SEQRES 30 C 479 PHE ASP SER ASN LEU GLY SER LYS LYS LEU THR SER THR SEQRES 31 C 479 TRP ASP ILE TYR ASP LEU TRP ALA ASN ARG VAL ASP ASN SEQRES 32 C 479 SER THR ALA SER ALA ILE LEU GLY ARG ASN LYS THR ALA SEQRES 33 C 479 THR GLY ILE LEU TYR ASN ALA THR GLU GLN SER TYR LYS SEQRES 34 C 479 ASP GLY LEU SER LYS ASN ASP THR ARG LEU PHE GLY GLN SEQRES 35 C 479 LYS ILE GLY SER LEU SER PRO ASN ALA ILE LEU ASN THR SEQRES 36 C 479 THR VAL PRO ALA HIS GLY ILE ALA PHE TYR ARG LEU ARG SEQRES 37 C 479 PRO SER SER ASP TYR LYS ASP ASP ASP ASP LYS SEQRES 1 D 479 MET PHE ALA PHE TYR PHE LEU THR ALA CYS ILE SER LEU SEQRES 2 D 479 LYS GLY VAL PHE GLY VAL SER PRO SER TYR ASN GLY LEU SEQRES 3 D 479 GLY LEU THR PRO GLN MET GLY TRP ASP ASN TRP ASN THR SEQRES 4 D 479 PHE ALA CYS ASP VAL SER GLU GLN LEU LEU LEU ASP THR SEQRES 5 D 479 ALA ASP ARG ILE SER ASP LEU GLY LEU LYS ASP MET GLY SEQRES 6 D 479 TYR LYS TYR ILE ILE LEU ASP ASP CYS TRP SER SER GLY SEQRES 7 D 479 ARG ASP SER ASP GLY PHE LEU VAL ALA ASP GLU GLN LYS SEQRES 8 D 479 PHE PRO ASN GLY MET GLY HIS VAL ALA ASP HIS LEU HIS SEQRES 9 D 479 ASN ASN SER PHE LEU PHE GLY MET TYR SER SER ALA GLY SEQRES 10 D 479 GLU TYR THR CYS ALA GLY TYR PRO GLY SER LEU GLY ARG SEQRES 11 D 479 GLU GLU GLU ASP ALA GLN PHE PHE ALA ASN ASN ARG VAL SEQRES 12 D 479 ASP TYR LEU LYS TYR ALA ASN CYS TYR ASN LYS GLY GLN SEQRES 13 D 479 PHE GLY THR PRO GLU ILE SER TYR HIS ARG TYR LYS ALA SEQRES 14 D 479 MET SER ASP ALA LEU ASN LYS THR GLY ARG PRO VAL PHE SEQRES 15 D 479 TYR SER LEU CYS ASN TRP GLY GLN ASP LEU THR PHE TYR SEQRES 16 D 479 TRP GLY SER GLY ILE ALA ASN SER TRP ARG MET SER GLY SEQRES 17 D 479 ASP VAL THR ALA GLU PHE THR ARG PRO ASP SER ARG CYS SEQRES 18 D 479 PRO CYS ASP GLY ASP GLU TYR ASP CYS LYS TYR ALA GLY SEQRES 19 D 479 PHE HIS CYS SER ILE MET ASN ILE LEU ASN LYS ALA ALA SEQRES 20 D 479 PRO MET GLY GLN ASN ALA GLY VAL GLY GLY TRP ASN ASP SEQRES 21 D 479 LEU ASP ASN LEU GLU VAL GLY VAL GLY ASN LEU THR ASP SEQRES 22 D 479 ASP GLU GLU LYS ALA HIS PHE SER MET TRP ALA MET VAL SEQRES 23 D 479 LYS SER PRO LEU ILE ILE GLY ALA ASN VAL ASN ASN LEU SEQRES 24 D 479 LYS ALA SER SER TYR SER ILE TYR SER GLN ALA SER VAL SEQRES 25 D 479 ILE ALA ILE ASN GLN ASP SER ASN GLY ILE PRO ALA THR SEQRES 26 D 479 ARG VAL TRP ARG TYR TYR VAL SER ASP THR ASP GLU TYR SEQRES 27 D 479 GLY GLN GLY GLU ILE GLN MET TRP SER GLY PRO LEU ASP SEQRES 28 D 479 ASN GLY ASP GLN VAL VAL ALA LEU LEU ASN GLY GLY SER SEQRES 29 D 479 VAL SER ARG PRO MET ASN THR THR LEU GLU GLU ILE PHE SEQRES 30 D 479 PHE ASP SER ASN LEU GLY SER LYS LYS LEU THR SER THR SEQRES 31 D 479 TRP ASP ILE TYR ASP LEU TRP ALA ASN ARG VAL ASP ASN SEQRES 32 D 479 SER THR ALA SER ALA ILE LEU GLY ARG ASN LYS THR ALA SEQRES 33 D 479 THR GLY ILE LEU TYR ASN ALA THR GLU GLN SER TYR LYS SEQRES 34 D 479 ASP GLY LEU SER LYS ASN ASP THR ARG LEU PHE GLY GLN SEQRES 35 D 479 LYS ILE GLY SER LEU SER PRO ASN ALA ILE LEU ASN THR SEQRES 36 D 479 THR VAL PRO ALA HIS GLY ILE ALA PHE TYR ARG LEU ARG SEQRES 37 D 479 PRO SER SER ASP TYR LYS ASP ASP ASP ASP LYS MODRES 3LRM ASN A 175 ASN GLYCOSYLATION SITE MODRES 3LRM ASN C 270 ASN GLYCOSYLATION SITE MODRES 3LRM ASN D 403 ASN GLYCOSYLATION SITE MODRES 3LRM ASN A 270 ASN GLYCOSYLATION SITE MODRES 3LRM ASN C 175 ASN GLYCOSYLATION SITE MODRES 3LRM ASN A 403 ASN GLYCOSYLATION SITE MODRES 3LRM ASN B 403 ASN GLYCOSYLATION SITE MODRES 3LRM ASN D 175 ASN GLYCOSYLATION SITE MODRES 3LRM ASN A 422 ASN GLYCOSYLATION SITE MODRES 3LRM ASN B 270 ASN GLYCOSYLATION SITE MODRES 3LRM ASN B 175 ASN GLYCOSYLATION SITE MODRES 3LRM ASN C 403 ASN GLYCOSYLATION SITE MODRES 3LRM ASN D 422 ASN GLYCOSYLATION SITE MODRES 3LRM ASN C 422 ASN GLYCOSYLATION SITE MODRES 3LRM ASN B 422 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET GLC K 1 11 HET FRU K 2 12 HET GLA K 3 11 HET GLC L 1 11 HET FRU L 2 12 HET GLA L 3 11 HET GLC M 1 11 HET FRU M 2 12 HET GLA M 3 11 HET GLC N 1 11 HET FRU N 2 12 HET GLA N 3 11 HET NAG A2001 14 HET NAG A4001 14 HET NAG B2001 14 HET NAG B4001 14 HET NAG C2001 14 HET NAG C4001 14 HET NAG C5001 14 HET NAG D2001 14 HET NAG D4001 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 5 NAG 21(C8 H15 N O6) FORMUL 11 GLC 4(C6 H12 O6) FORMUL 11 FRU 4(C6 H12 O6) FORMUL 11 GLA 4(C6 H12 O6) FORMUL 24 HOH *1022(H2 O) HELIX 1 1 ASN A 36 ALA A 41 1 6 HELIX 2 2 SER A 45 LEU A 59 1 15 HELIX 3 3 LEU A 61 GLY A 65 5 5 HELIX 4 4 GLY A 95 ASN A 106 1 12 HELIX 5 5 ARG A 130 ASN A 141 1 12 HELIX 6 6 THR A 159 THR A 177 1 19 HELIX 7 7 LEU A 192 GLY A 197 1 6 HELIX 8 8 SER A 238 ALA A 247 1 10 HELIX 9 9 PRO A 248 ALA A 253 5 6 HELIX 10 10 THR A 272 VAL A 286 1 15 HELIX 11 11 ASN A 295 ASN A 298 5 4 HELIX 12 12 ALA A 301 TYR A 307 1 7 HELIX 13 13 GLN A 309 GLN A 317 1 9 HELIX 14 14 THR A 372 PHE A 377 1 6 HELIX 15 15 SER A 384 SER A 389 1 6 HELIX 16 16 ASP A 402 GLY A 411 1 10 HELIX 17 17 SER A 427 LYS A 434 1 8 HELIX 18 18 ASP A 436 GLY A 441 1 6 HELIX 19 19 ASN B 36 ALA B 41 1 6 HELIX 20 20 SER B 45 LEU B 59 1 15 HELIX 21 21 LEU B 61 GLY B 65 5 5 HELIX 22 22 GLY B 95 ASN B 106 1 12 HELIX 23 23 ARG B 130 ASN B 141 1 12 HELIX 24 24 THR B 159 THR B 177 1 19 HELIX 25 25 LEU B 192 GLY B 197 1 6 HELIX 26 26 SER B 238 ALA B 247 1 10 HELIX 27 27 PRO B 248 ALA B 253 5 6 HELIX 28 28 THR B 272 VAL B 286 1 15 HELIX 29 29 ASN B 295 ASN B 298 5 4 HELIX 30 30 ALA B 301 TYR B 307 1 7 HELIX 31 31 GLN B 309 GLN B 317 1 9 HELIX 32 32 THR B 372 PHE B 377 1 6 HELIX 33 33 SER B 384 SER B 389 1 6 HELIX 34 34 ASP B 402 GLY B 411 1 10 HELIX 35 35 SER B 427 LYS B 434 1 8 HELIX 36 36 ASP B 436 GLY B 441 1 6 HELIX 37 37 ASN C 36 ALA C 41 1 6 HELIX 38 38 SER C 45 LEU C 59 1 15 HELIX 39 39 LEU C 61 GLY C 65 5 5 HELIX 40 40 GLY C 95 ASN C 106 1 12 HELIX 41 41 ARG C 130 ASN C 141 1 12 HELIX 42 42 THR C 159 THR C 177 1 19 HELIX 43 43 LEU C 192 GLY C 197 1 6 HELIX 44 44 SER C 238 ALA C 247 1 10 HELIX 45 45 PRO C 248 ALA C 253 5 6 HELIX 46 46 THR C 272 VAL C 286 1 15 HELIX 47 47 ASN C 295 ASN C 298 5 4 HELIX 48 48 ALA C 301 TYR C 307 1 7 HELIX 49 49 GLN C 309 GLN C 317 1 9 HELIX 50 50 THR C 372 PHE C 377 1 6 HELIX 51 51 SER C 384 SER C 389 1 6 HELIX 52 52 ASP C 402 GLY C 411 1 10 HELIX 53 53 SER C 427 LYS C 434 1 8 HELIX 54 54 ASP C 436 GLY C 441 1 6 HELIX 55 55 ASN D 36 ALA D 41 1 6 HELIX 56 56 SER D 45 LEU D 59 1 15 HELIX 57 57 LEU D 61 GLY D 65 5 5 HELIX 58 58 MET D 96 ASN D 106 1 11 HELIX 59 59 ARG D 130 ASN D 141 1 12 HELIX 60 60 THR D 159 THR D 177 1 19 HELIX 61 61 LEU D 192 GLY D 197 1 6 HELIX 62 62 SER D 238 ALA D 247 1 10 HELIX 63 63 PRO D 248 ALA D 253 5 6 HELIX 64 64 THR D 272 VAL D 286 1 15 HELIX 65 65 ASN D 295 ASN D 298 5 4 HELIX 66 66 ALA D 301 TYR D 307 1 7 HELIX 67 67 GLN D 309 GLN D 317 1 9 HELIX 68 68 THR D 372 PHE D 377 1 6 HELIX 69 69 SER D 384 SER D 389 1 6 HELIX 70 70 ASP D 402 GLY D 411 1 10 HELIX 71 71 SER D 427 LYS D 434 1 8 HELIX 72 72 ASP D 436 GLY D 441 1 6 SHEET 1 A 8 TRP A 258 ASP A 260 0 SHEET 2 A 8 SER A 203 ARG A 205 1 N TRP A 204 O ASP A 260 SHEET 3 A 8 PHE A 182 LEU A 185 1 N LEU A 185 O SER A 203 SHEET 4 A 8 TYR A 145 ALA A 149 1 N TYR A 148 O SER A 184 SHEET 5 A 8 LEU A 109 SER A 115 1 N SER A 114 O ALA A 149 SHEET 6 A 8 TYR A 68 ILE A 70 1 N ILE A 69 O GLY A 111 SHEET 7 A 8 MET A 32 ASP A 35 1 N TRP A 34 O TYR A 68 SHEET 8 A 8 LEU A 290 ILE A 292 1 O ILE A 292 N GLY A 33 SHEET 1 B 2 SER A 76 ARG A 79 0 SHEET 2 B 2 LEU A 85 ALA A 87 -1 O VAL A 86 N SER A 77 SHEET 1 C 6 THR A 325 TYR A 331 0 SHEET 2 C 6 GLU A 342 PRO A 349 -1 O SER A 347 N THR A 325 SHEET 3 C 6 GLN A 355 ASN A 361 -1 O LEU A 360 N GLN A 344 SHEET 4 C 6 GLY A 461 PRO A 469 -1 O TYR A 465 N VAL A 357 SHEET 5 C 6 TRP A 391 ASP A 395 -1 N ASP A 392 O ARG A 468 SHEET 6 C 6 GLN A 442 LEU A 447 -1 O LEU A 447 N TRP A 391 SHEET 1 D 2 ARG A 367 THR A 371 0 SHEET 2 D 2 LEU A 453 VAL A 457 -1 O VAL A 457 N ARG A 367 SHEET 1 E 8 TRP B 258 ASP B 260 0 SHEET 2 E 8 SER B 203 ARG B 205 1 N TRP B 204 O ASP B 260 SHEET 3 E 8 PHE B 182 LEU B 185 1 N LEU B 185 O SER B 203 SHEET 4 E 8 TYR B 145 ALA B 149 1 N LEU B 146 O SER B 184 SHEET 5 E 8 LEU B 109 SER B 115 1 N SER B 114 O ALA B 149 SHEET 6 E 8 TYR B 68 ILE B 70 1 N ILE B 69 O GLY B 111 SHEET 7 E 8 MET B 32 ASP B 35 1 N TRP B 34 O ILE B 70 SHEET 8 E 8 LEU B 290 ILE B 292 1 O ILE B 292 N GLY B 33 SHEET 1 F 2 SER B 76 ARG B 79 0 SHEET 2 F 2 LEU B 85 ALA B 87 -1 O VAL B 86 N SER B 77 SHEET 1 G 6 THR B 325 TYR B 331 0 SHEET 2 G 6 GLU B 342 PRO B 349 -1 O SER B 347 N THR B 325 SHEET 3 G 6 GLN B 355 ASN B 361 -1 O LEU B 360 N GLN B 344 SHEET 4 G 6 GLY B 461 PRO B 469 -1 O TYR B 465 N VAL B 357 SHEET 5 G 6 TRP B 391 ASP B 395 -1 N ASP B 392 O ARG B 468 SHEET 6 G 6 GLN B 442 LEU B 447 -1 O LEU B 447 N TRP B 391 SHEET 1 H 2 ARG B 367 THR B 371 0 SHEET 2 H 2 LEU B 453 VAL B 457 -1 O LEU B 453 N THR B 371 SHEET 1 I 8 TRP C 258 ASP C 260 0 SHEET 2 I 8 SER C 203 ARG C 205 1 N TRP C 204 O ASP C 260 SHEET 3 I 8 PHE C 182 LEU C 185 1 N LEU C 185 O SER C 203 SHEET 4 I 8 TYR C 145 ALA C 149 1 N LEU C 146 O SER C 184 SHEET 5 I 8 LEU C 109 SER C 115 1 N SER C 114 O ALA C 149 SHEET 6 I 8 TYR C 68 ILE C 70 1 N ILE C 69 O GLY C 111 SHEET 7 I 8 MET C 32 ASP C 35 1 N TRP C 34 O ILE C 70 SHEET 8 I 8 LEU C 290 ILE C 292 1 O ILE C 292 N GLY C 33 SHEET 1 J 2 SER C 76 ARG C 79 0 SHEET 2 J 2 LEU C 85 ALA C 87 -1 O VAL C 86 N SER C 77 SHEET 1 K 6 THR C 325 TYR C 331 0 SHEET 2 K 6 GLU C 342 PRO C 349 -1 O SER C 347 N THR C 325 SHEET 3 K 6 GLN C 355 ASN C 361 -1 O LEU C 360 N GLN C 344 SHEET 4 K 6 GLY C 461 PRO C 469 -1 O TYR C 465 N VAL C 357 SHEET 5 K 6 TRP C 391 ASP C 395 -1 N ASP C 392 O ARG C 468 SHEET 6 K 6 GLN C 442 LEU C 447 -1 O LEU C 447 N TRP C 391 SHEET 1 L 2 ARG C 367 THR C 371 0 SHEET 2 L 2 LEU C 453 VAL C 457 -1 O LEU C 453 N THR C 371 SHEET 1 M 8 TRP D 258 ASP D 260 0 SHEET 2 M 8 SER D 203 ARG D 205 1 N TRP D 204 O ASP D 260 SHEET 3 M 8 PHE D 182 LEU D 185 1 N LEU D 185 O SER D 203 SHEET 4 M 8 TYR D 145 ALA D 149 1 N LEU D 146 O SER D 184 SHEET 5 M 8 LEU D 109 SER D 115 1 N SER D 114 O ALA D 149 SHEET 6 M 8 TYR D 68 ILE D 70 1 N ILE D 69 O LEU D 109 SHEET 7 M 8 MET D 32 ASP D 35 1 N TRP D 34 O ILE D 70 SHEET 8 M 8 LEU D 290 ILE D 292 1 O ILE D 292 N GLY D 33 SHEET 1 N 2 SER D 76 ARG D 79 0 SHEET 2 N 2 LEU D 85 ALA D 87 -1 O VAL D 86 N SER D 77 SHEET 1 O 6 THR D 325 TYR D 331 0 SHEET 2 O 6 GLU D 342 PRO D 349 -1 O SER D 347 N THR D 325 SHEET 3 O 6 GLN D 355 ASN D 361 -1 O LEU D 360 N GLN D 344 SHEET 4 O 6 GLY D 461 PRO D 469 -1 O TYR D 465 N VAL D 357 SHEET 5 O 6 TRP D 391 ASP D 395 -1 N ASP D 392 O ARG D 468 SHEET 6 O 6 GLN D 442 LEU D 447 -1 O LEU D 447 N TRP D 391 SHEET 1 P 2 ARG D 367 THR D 371 0 SHEET 2 P 2 LEU D 453 VAL D 457 -1 O LEU D 453 N THR D 371 SSBOND 1 CYS A 42 CYS A 74 1555 1555 2.04 SSBOND 2 CYS A 121 CYS A 151 1555 1555 2.03 SSBOND 3 CYS A 221 CYS A 237 1555 1555 2.05 SSBOND 4 CYS A 223 CYS A 230 1555 1555 2.03 SSBOND 5 CYS B 42 CYS B 74 1555 1555 2.04 SSBOND 6 CYS B 121 CYS B 151 1555 1555 2.02 SSBOND 7 CYS B 221 CYS B 237 1555 1555 2.04 SSBOND 8 CYS B 223 CYS B 230 1555 1555 2.03 SSBOND 9 CYS C 42 CYS C 74 1555 1555 2.04 SSBOND 10 CYS C 121 CYS C 151 1555 1555 2.04 SSBOND 11 CYS C 221 CYS C 237 1555 1555 2.03 SSBOND 12 CYS C 223 CYS C 230 1555 1555 2.04 SSBOND 13 CYS D 42 CYS D 74 1555 1555 2.04 SSBOND 14 CYS D 121 CYS D 151 1555 1555 2.03 SSBOND 15 CYS D 221 CYS D 237 1555 1555 2.04 SSBOND 16 CYS D 223 CYS D 230 1555 1555 2.03 LINK ND2 ASN A 175 C1 NAG A2001 1555 1555 1.43 LINK ND2 ASN A 270 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 403 C1 NAG A4001 1555 1555 1.44 LINK ND2 ASN A 422 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 175 C1 NAG B2001 1555 1555 1.44 LINK ND2 ASN B 270 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN B 403 C1 NAG B4001 1555 1555 1.44 LINK ND2 ASN B 422 C1 NAG H 1 1555 1555 1.45 LINK ND2 ASN C 175 C1 NAG C2001 1555 1555 1.44 LINK ND2 ASN C 270 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN C 403 C1 NAG C4001 1555 1555 1.44 LINK ND2 ASN C 422 C1 NAG C5001 1555 1555 1.45 LINK ND2 ASN D 175 C1 NAG D2001 1555 1555 1.44 LINK ND2 ASN D 403 C1 NAG D4001 1555 1555 1.44 LINK ND2 ASN D 422 C1 NAG J 1 1555 1555 1.45 LINK O3 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O3 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK O3 NAG I 1 C1 NAG I 2 1555 1555 1.45 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.45 LINK C1 GLC K 1 O2 FRU K 2 1555 1555 1.43 LINK O6 GLC K 1 C1 GLA K 3 1555 1555 1.33 LINK C1 GLC L 1 O2 FRU L 2 1555 1555 1.43 LINK O6 GLC L 1 C1 GLA L 3 1555 1555 1.33 LINK C1 GLC M 1 O2 FRU M 2 1555 1555 1.43 LINK O6 GLC M 1 C1 GLA M 3 1555 1555 1.33 LINK C1 GLC N 1 O2 FRU N 2 1555 1555 1.43 LINK O6 GLC N 1 C1 GLA N 3 1555 1555 1.33 CRYST1 111.170 129.530 136.780 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007311 0.00000