data_3LRN # _entry.id 3LRN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LRN pdb_00003lrn 10.2210/pdb3lrn/pdb NDB NA0444 ? ? RCSB RCSB057643 ? ? WWPDB D_1000057643 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-13 4 'Structure model' 1 3 2024-02-21 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_conn_angle 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.value' 15 3 'Structure model' '_struct_conn.pdbx_dist_value' 16 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 17 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 3 'Structure model' '_struct_ref_seq_dif.details' 32 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LRN _pdbx_database_status.recvd_initial_deposition_date 2010-02-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Li, P.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;The Structural Basis of 5' Triphosphate Double-Stranded RNA Recognition by RIG-I C-Terminal Domain. ; _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 1032 _citation.page_last 1043 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20637642 _citation.pdbx_database_id_DOI 10.1016/j.str.2010.05.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lu, C.' 1 ? primary 'Xu, H.' 2 ? primary 'Ranjith-Kumar, C.T.' 3 ? primary 'Brooks, M.T.' 4 ? primary 'Hou, T.Y.' 5 ? primary 'Hu, F.' 6 ? primary 'Herr, A.B.' 7 ? primary 'Strong, R.K.' 8 ? primary 'Kao, C.C.' 9 ? primary 'Li, P.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable ATP-dependent RNA helicase DDX58' 14203.516 2 3.6.1.- C829S 'human RIG-I CTD' ? 2 polymer syn ;RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3') ; 4667.714 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DEAD-box protein 58, Retinoic acid-inducible gene 1 protein, RIG-1, Retinoic acid-inducible gene I protein, RIG-I' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;KENKKLLCRKCKALACYTADVRVIEESHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTF EIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM ; ;KENKKLLCRKCKALACYTADVRVIEESHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTF EIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM ; A,B ? 2 polyribonucleotide no yes '(GTP)GCGCGCGCGCGCC' GGCGCGCGCGCGCC C,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLU n 1 3 ASN n 1 4 LYS n 1 5 LYS n 1 6 LEU n 1 7 LEU n 1 8 CYS n 1 9 ARG n 1 10 LYS n 1 11 CYS n 1 12 LYS n 1 13 ALA n 1 14 LEU n 1 15 ALA n 1 16 CYS n 1 17 TYR n 1 18 THR n 1 19 ALA n 1 20 ASP n 1 21 VAL n 1 22 ARG n 1 23 VAL n 1 24 ILE n 1 25 GLU n 1 26 GLU n 1 27 SER n 1 28 HIS n 1 29 TYR n 1 30 THR n 1 31 VAL n 1 32 LEU n 1 33 GLY n 1 34 ASP n 1 35 ALA n 1 36 PHE n 1 37 LYS n 1 38 GLU n 1 39 CYS n 1 40 PHE n 1 41 VAL n 1 42 SER n 1 43 ARG n 1 44 PRO n 1 45 HIS n 1 46 PRO n 1 47 LYS n 1 48 PRO n 1 49 LYS n 1 50 GLN n 1 51 PHE n 1 52 SER n 1 53 SER n 1 54 PHE n 1 55 GLU n 1 56 LYS n 1 57 ARG n 1 58 ALA n 1 59 LYS n 1 60 ILE n 1 61 PHE n 1 62 CYS n 1 63 ALA n 1 64 ARG n 1 65 GLN n 1 66 ASN n 1 67 CYS n 1 68 SER n 1 69 HIS n 1 70 ASP n 1 71 TRP n 1 72 GLY n 1 73 ILE n 1 74 HIS n 1 75 VAL n 1 76 LYS n 1 77 TYR n 1 78 LYS n 1 79 THR n 1 80 PHE n 1 81 GLU n 1 82 ILE n 1 83 PRO n 1 84 VAL n 1 85 ILE n 1 86 LYS n 1 87 ILE n 1 88 GLU n 1 89 SER n 1 90 PHE n 1 91 VAL n 1 92 VAL n 1 93 GLU n 1 94 ASP n 1 95 ILE n 1 96 ALA n 1 97 THR n 1 98 GLY n 1 99 VAL n 1 100 GLN n 1 101 THR n 1 102 LEU n 1 103 TYR n 1 104 SER n 1 105 LYS n 1 106 TRP n 1 107 LYS n 1 108 ASP n 1 109 PHE n 1 110 HIS n 1 111 PHE n 1 112 GLU n 1 113 LYS n 1 114 ILE n 1 115 PRO n 1 116 PHE n 1 117 ASP n 1 118 PRO n 1 119 ALA n 1 120 GLU n 1 121 MET n 2 1 GTP n 2 2 G n 2 3 C n 2 4 G n 2 5 C n 2 6 G n 2 7 C n 2 8 G n 2 9 C n 2 10 G n 2 11 C n 2 12 G n 2 13 C n 2 14 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DDX58, RIG-I' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET21b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'In vitro transcribed RNA with T7 RNA polymerase' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 803 803 LYS LYS A . n A 1 2 GLU 2 804 804 GLU GLU A . n A 1 3 ASN 3 805 805 ASN ASN A . n A 1 4 LYS 4 806 806 LYS LYS A . n A 1 5 LYS 5 807 807 LYS LYS A . n A 1 6 LEU 6 808 808 LEU LEU A . n A 1 7 LEU 7 809 809 LEU LEU A . n A 1 8 CYS 8 810 810 CYS CYS A . n A 1 9 ARG 9 811 811 ARG ARG A . n A 1 10 LYS 10 812 812 LYS LYS A . n A 1 11 CYS 11 813 813 CYS CYS A . n A 1 12 LYS 12 814 814 LYS LYS A . n A 1 13 ALA 13 815 815 ALA ALA A . n A 1 14 LEU 14 816 816 LEU LEU A . n A 1 15 ALA 15 817 817 ALA ALA A . n A 1 16 CYS 16 818 818 CYS CYS A . n A 1 17 TYR 17 819 819 TYR TYR A . n A 1 18 THR 18 820 820 THR THR A . n A 1 19 ALA 19 821 821 ALA ALA A . n A 1 20 ASP 20 822 822 ASP ASP A . n A 1 21 VAL 21 823 823 VAL VAL A . n A 1 22 ARG 22 824 824 ARG ARG A . n A 1 23 VAL 23 825 825 VAL VAL A . n A 1 24 ILE 24 826 826 ILE ILE A . n A 1 25 GLU 25 827 827 GLU GLU A . n A 1 26 GLU 26 828 828 GLU GLU A . n A 1 27 SER 27 829 829 SER SER A . n A 1 28 HIS 28 830 830 HIS HIS A . n A 1 29 TYR 29 831 831 TYR TYR A . n A 1 30 THR 30 832 832 THR THR A . n A 1 31 VAL 31 833 833 VAL VAL A . n A 1 32 LEU 32 834 834 LEU LEU A . n A 1 33 GLY 33 835 835 GLY GLY A . n A 1 34 ASP 34 836 836 ASP ASP A . n A 1 35 ALA 35 837 837 ALA ALA A . n A 1 36 PHE 36 838 838 PHE PHE A . n A 1 37 LYS 37 839 839 LYS LYS A . n A 1 38 GLU 38 840 840 GLU GLU A . n A 1 39 CYS 39 841 841 CYS CYS A . n A 1 40 PHE 40 842 842 PHE PHE A . n A 1 41 VAL 41 843 843 VAL VAL A . n A 1 42 SER 42 844 844 SER SER A . n A 1 43 ARG 43 845 845 ARG ARG A . n A 1 44 PRO 44 846 846 PRO PRO A . n A 1 45 HIS 45 847 847 HIS HIS A . n A 1 46 PRO 46 848 848 PRO PRO A . n A 1 47 LYS 47 849 849 LYS LYS A . n A 1 48 PRO 48 850 850 PRO PRO A . n A 1 49 LYS 49 851 851 LYS LYS A . n A 1 50 GLN 50 852 852 GLN GLN A . n A 1 51 PHE 51 853 853 PHE PHE A . n A 1 52 SER 52 854 854 SER SER A . n A 1 53 SER 53 855 855 SER SER A . n A 1 54 PHE 54 856 856 PHE PHE A . n A 1 55 GLU 55 857 857 GLU GLU A . n A 1 56 LYS 56 858 858 LYS LYS A . n A 1 57 ARG 57 859 859 ARG ARG A . n A 1 58 ALA 58 860 860 ALA ALA A . n A 1 59 LYS 59 861 861 LYS LYS A . n A 1 60 ILE 60 862 862 ILE ILE A . n A 1 61 PHE 61 863 863 PHE PHE A . n A 1 62 CYS 62 864 864 CYS CYS A . n A 1 63 ALA 63 865 865 ALA ALA A . n A 1 64 ARG 64 866 866 ARG ARG A . n A 1 65 GLN 65 867 867 GLN GLN A . n A 1 66 ASN 66 868 868 ASN ASN A . n A 1 67 CYS 67 869 869 CYS CYS A . n A 1 68 SER 68 870 870 SER SER A . n A 1 69 HIS 69 871 871 HIS HIS A . n A 1 70 ASP 70 872 872 ASP ASP A . n A 1 71 TRP 71 873 873 TRP TRP A . n A 1 72 GLY 72 874 874 GLY GLY A . n A 1 73 ILE 73 875 875 ILE ILE A . n A 1 74 HIS 74 876 876 HIS HIS A . n A 1 75 VAL 75 877 877 VAL VAL A . n A 1 76 LYS 76 878 878 LYS LYS A . n A 1 77 TYR 77 879 879 TYR TYR A . n A 1 78 LYS 78 880 880 LYS LYS A . n A 1 79 THR 79 881 881 THR THR A . n A 1 80 PHE 80 882 882 PHE PHE A . n A 1 81 GLU 81 883 883 GLU GLU A . n A 1 82 ILE 82 884 884 ILE ILE A . n A 1 83 PRO 83 885 885 PRO PRO A . n A 1 84 VAL 84 886 886 VAL VAL A . n A 1 85 ILE 85 887 887 ILE ILE A . n A 1 86 LYS 86 888 888 LYS LYS A . n A 1 87 ILE 87 889 889 ILE ILE A . n A 1 88 GLU 88 890 890 GLU GLU A . n A 1 89 SER 89 891 891 SER SER A . n A 1 90 PHE 90 892 892 PHE PHE A . n A 1 91 VAL 91 893 893 VAL VAL A . n A 1 92 VAL 92 894 894 VAL VAL A . n A 1 93 GLU 93 895 895 GLU GLU A . n A 1 94 ASP 94 896 896 ASP ASP A . n A 1 95 ILE 95 897 897 ILE ILE A . n A 1 96 ALA 96 898 898 ALA ALA A . n A 1 97 THR 97 899 899 THR THR A . n A 1 98 GLY 98 900 900 GLY GLY A . n A 1 99 VAL 99 901 901 VAL VAL A . n A 1 100 GLN 100 902 902 GLN GLN A . n A 1 101 THR 101 903 903 THR THR A . n A 1 102 LEU 102 904 904 LEU LEU A . n A 1 103 TYR 103 905 905 TYR TYR A . n A 1 104 SER 104 906 906 SER SER A . n A 1 105 LYS 105 907 907 LYS LYS A . n A 1 106 TRP 106 908 908 TRP TRP A . n A 1 107 LYS 107 909 909 LYS LYS A . n A 1 108 ASP 108 910 910 ASP ASP A . n A 1 109 PHE 109 911 911 PHE PHE A . n A 1 110 HIS 110 912 912 HIS HIS A . n A 1 111 PHE 111 913 913 PHE PHE A . n A 1 112 GLU 112 914 914 GLU GLU A . n A 1 113 LYS 113 915 915 LYS LYS A . n A 1 114 ILE 114 916 916 ILE ILE A . n A 1 115 PRO 115 917 917 PRO PRO A . n A 1 116 PHE 116 918 918 PHE PHE A . n A 1 117 ASP 117 919 919 ASP ASP A . n A 1 118 PRO 118 920 920 PRO PRO A . n A 1 119 ALA 119 921 921 ALA ALA A . n A 1 120 GLU 120 922 922 GLU GLU A . n A 1 121 MET 121 923 923 MET MET A . n B 1 1 LYS 1 803 803 LYS LYS B . n B 1 2 GLU 2 804 804 GLU GLU B . n B 1 3 ASN 3 805 805 ASN ASN B . n B 1 4 LYS 4 806 806 LYS LYS B . n B 1 5 LYS 5 807 807 LYS LYS B . n B 1 6 LEU 6 808 808 LEU LEU B . n B 1 7 LEU 7 809 809 LEU LEU B . n B 1 8 CYS 8 810 810 CYS CYS B . n B 1 9 ARG 9 811 811 ARG ARG B . n B 1 10 LYS 10 812 812 LYS LYS B . n B 1 11 CYS 11 813 813 CYS CYS B . n B 1 12 LYS 12 814 814 LYS LYS B . n B 1 13 ALA 13 815 815 ALA ALA B . n B 1 14 LEU 14 816 816 LEU LEU B . n B 1 15 ALA 15 817 817 ALA ALA B . n B 1 16 CYS 16 818 818 CYS CYS B . n B 1 17 TYR 17 819 819 TYR TYR B . n B 1 18 THR 18 820 820 THR THR B . n B 1 19 ALA 19 821 821 ALA ALA B . n B 1 20 ASP 20 822 822 ASP ASP B . n B 1 21 VAL 21 823 823 VAL VAL B . n B 1 22 ARG 22 824 824 ARG ARG B . n B 1 23 VAL 23 825 825 VAL VAL B . n B 1 24 ILE 24 826 826 ILE ILE B . n B 1 25 GLU 25 827 827 GLU GLU B . n B 1 26 GLU 26 828 828 GLU GLU B . n B 1 27 SER 27 829 829 SER SER B . n B 1 28 HIS 28 830 830 HIS HIS B . n B 1 29 TYR 29 831 831 TYR TYR B . n B 1 30 THR 30 832 832 THR THR B . n B 1 31 VAL 31 833 833 VAL VAL B . n B 1 32 LEU 32 834 834 LEU LEU B . n B 1 33 GLY 33 835 835 GLY GLY B . n B 1 34 ASP 34 836 836 ASP ASP B . n B 1 35 ALA 35 837 837 ALA ALA B . n B 1 36 PHE 36 838 838 PHE PHE B . n B 1 37 LYS 37 839 839 LYS LYS B . n B 1 38 GLU 38 840 840 GLU GLU B . n B 1 39 CYS 39 841 841 CYS CYS B . n B 1 40 PHE 40 842 842 PHE PHE B . n B 1 41 VAL 41 843 843 VAL VAL B . n B 1 42 SER 42 844 844 SER SER B . n B 1 43 ARG 43 845 845 ARG ARG B . n B 1 44 PRO 44 846 846 PRO PRO B . n B 1 45 HIS 45 847 847 HIS HIS B . n B 1 46 PRO 46 848 848 PRO PRO B . n B 1 47 LYS 47 849 849 LYS LYS B . n B 1 48 PRO 48 850 850 PRO PRO B . n B 1 49 LYS 49 851 851 LYS LYS B . n B 1 50 GLN 50 852 852 GLN GLN B . n B 1 51 PHE 51 853 853 PHE PHE B . n B 1 52 SER 52 854 854 SER SER B . n B 1 53 SER 53 855 855 SER SER B . n B 1 54 PHE 54 856 856 PHE PHE B . n B 1 55 GLU 55 857 857 GLU GLU B . n B 1 56 LYS 56 858 858 LYS LYS B . n B 1 57 ARG 57 859 859 ARG ARG B . n B 1 58 ALA 58 860 860 ALA ALA B . n B 1 59 LYS 59 861 861 LYS LYS B . n B 1 60 ILE 60 862 862 ILE ILE B . n B 1 61 PHE 61 863 863 PHE PHE B . n B 1 62 CYS 62 864 864 CYS CYS B . n B 1 63 ALA 63 865 865 ALA ALA B . n B 1 64 ARG 64 866 866 ARG ARG B . n B 1 65 GLN 65 867 867 GLN GLN B . n B 1 66 ASN 66 868 868 ASN ASN B . n B 1 67 CYS 67 869 869 CYS CYS B . n B 1 68 SER 68 870 870 SER SER B . n B 1 69 HIS 69 871 871 HIS HIS B . n B 1 70 ASP 70 872 872 ASP ASP B . n B 1 71 TRP 71 873 873 TRP TRP B . n B 1 72 GLY 72 874 874 GLY GLY B . n B 1 73 ILE 73 875 875 ILE ILE B . n B 1 74 HIS 74 876 876 HIS HIS B . n B 1 75 VAL 75 877 877 VAL VAL B . n B 1 76 LYS 76 878 878 LYS LYS B . n B 1 77 TYR 77 879 879 TYR TYR B . n B 1 78 LYS 78 880 880 LYS LYS B . n B 1 79 THR 79 881 881 THR THR B . n B 1 80 PHE 80 882 882 PHE PHE B . n B 1 81 GLU 81 883 883 GLU GLU B . n B 1 82 ILE 82 884 884 ILE ILE B . n B 1 83 PRO 83 885 885 PRO PRO B . n B 1 84 VAL 84 886 886 VAL VAL B . n B 1 85 ILE 85 887 887 ILE ILE B . n B 1 86 LYS 86 888 888 LYS LYS B . n B 1 87 ILE 87 889 889 ILE ILE B . n B 1 88 GLU 88 890 890 GLU GLU B . n B 1 89 SER 89 891 891 SER SER B . n B 1 90 PHE 90 892 892 PHE PHE B . n B 1 91 VAL 91 893 893 VAL VAL B . n B 1 92 VAL 92 894 894 VAL VAL B . n B 1 93 GLU 93 895 895 GLU GLU B . n B 1 94 ASP 94 896 896 ASP ASP B . n B 1 95 ILE 95 897 897 ILE ILE B . n B 1 96 ALA 96 898 898 ALA ALA B . n B 1 97 THR 97 899 899 THR THR B . n B 1 98 GLY 98 900 900 GLY GLY B . n B 1 99 VAL 99 901 901 VAL VAL B . n B 1 100 GLN 100 902 902 GLN GLN B . n B 1 101 THR 101 903 903 THR THR B . n B 1 102 LEU 102 904 904 LEU LEU B . n B 1 103 TYR 103 905 905 TYR TYR B . n B 1 104 SER 104 906 906 SER SER B . n B 1 105 LYS 105 907 907 LYS LYS B . n B 1 106 TRP 106 908 908 TRP TRP B . n B 1 107 LYS 107 909 909 LYS LYS B . n B 1 108 ASP 108 910 910 ASP ASP B . n B 1 109 PHE 109 911 911 PHE PHE B . n B 1 110 HIS 110 912 912 HIS HIS B . n B 1 111 PHE 111 913 913 PHE PHE B . n B 1 112 GLU 112 914 914 GLU GLU B . n B 1 113 LYS 113 915 915 LYS LYS B . n B 1 114 ILE 114 916 916 ILE ILE B . n B 1 115 PRO 115 917 917 PRO PRO B . n B 1 116 PHE 116 918 918 PHE PHE B . n B 1 117 ASP 117 919 919 ASP ASP B . n B 1 118 PRO 118 920 920 PRO PRO B . n B 1 119 ALA 119 921 921 ALA ALA B . n B 1 120 GLU 120 922 922 GLU GLU B . n B 1 121 MET 121 923 923 MET MET B . n C 2 1 GTP 1 0 0 GTP GTP C . n C 2 2 G 2 1 1 G G C . n C 2 3 C 3 2 2 C C C . n C 2 4 G 4 3 3 G G C . n C 2 5 C 5 4 4 C C C . n C 2 6 G 6 5 5 G G C . n C 2 7 C 7 6 6 C C C . n C 2 8 G 8 7 7 G G C . n C 2 9 C 9 8 8 C C C . n C 2 10 G 10 9 9 G G C . n C 2 11 C 11 10 10 C C C . n C 2 12 G 12 11 11 G G C . n C 2 13 C 13 12 12 C C C . n C 2 14 C 14 13 13 C C C . n D 2 1 GTP 1 0 0 GTP GTP D . n D 2 2 G 2 1 1 G G D . n D 2 3 C 3 2 2 C C D . n D 2 4 G 4 3 3 G G D . n D 2 5 C 5 4 4 C C D . n D 2 6 G 6 5 5 G G D . n D 2 7 C 7 6 6 C C D . n D 2 8 G 8 7 7 G G D . n D 2 9 C 9 8 8 C C D . n D 2 10 G 10 9 9 G G D . n D 2 11 C 11 10 10 C C D . n D 2 12 G 12 11 11 G G D . n D 2 13 C 13 12 12 C C D . n D 2 14 C 14 13 13 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN 1 1 1 ZN ZN A . F 3 ZN 1 2 2 ZN ZN B . G 4 HOH 1 2 2 HOH TIP A . G 4 HOH 2 4 4 HOH TIP A . G 4 HOH 3 8 8 HOH TIP A . G 4 HOH 4 12 12 HOH TIP A . G 4 HOH 5 14 14 HOH TIP A . G 4 HOH 6 15 15 HOH TIP A . G 4 HOH 7 18 18 HOH TIP A . G 4 HOH 8 21 21 HOH TIP A . G 4 HOH 9 25 25 HOH TIP A . G 4 HOH 10 26 26 HOH TIP A . G 4 HOH 11 32 32 HOH TIP A . G 4 HOH 12 39 39 HOH TIP A . G 4 HOH 13 40 40 HOH TIP A . G 4 HOH 14 45 45 HOH TIP A . G 4 HOH 15 46 46 HOH TIP A . G 4 HOH 16 50 50 HOH TIP A . G 4 HOH 17 54 54 HOH TIP A . G 4 HOH 18 924 1 HOH TIP A . H 4 HOH 1 3 3 HOH TIP B . H 4 HOH 2 5 5 HOH TIP B . H 4 HOH 3 6 6 HOH TIP B . H 4 HOH 4 7 7 HOH TIP B . H 4 HOH 5 9 9 HOH TIP B . H 4 HOH 6 10 10 HOH TIP B . H 4 HOH 7 11 11 HOH TIP B . H 4 HOH 8 13 13 HOH TIP B . H 4 HOH 9 16 16 HOH TIP B . H 4 HOH 10 17 17 HOH TIP B . H 4 HOH 11 19 19 HOH TIP B . H 4 HOH 12 23 23 HOH TIP B . H 4 HOH 13 24 24 HOH TIP B . H 4 HOH 14 30 30 HOH TIP B . H 4 HOH 15 31 31 HOH TIP B . H 4 HOH 16 33 33 HOH TIP B . H 4 HOH 17 34 34 HOH TIP B . H 4 HOH 18 35 35 HOH TIP B . H 4 HOH 19 36 36 HOH TIP B . H 4 HOH 20 37 37 HOH TIP B . H 4 HOH 21 44 44 HOH TIP B . H 4 HOH 22 47 47 HOH TIP B . H 4 HOH 23 48 48 HOH TIP B . H 4 HOH 24 51 51 HOH TIP B . H 4 HOH 25 52 52 HOH TIP B . H 4 HOH 26 53 53 HOH TIP B . I 4 HOH 1 20 20 HOH TIP C . I 4 HOH 2 22 22 HOH TIP C . I 4 HOH 3 27 27 HOH TIP C . I 4 HOH 4 38 38 HOH TIP C . I 4 HOH 5 42 42 HOH TIP C . J 4 HOH 1 28 28 HOH TIP D . J 4 HOH 2 29 29 HOH TIP D . J 4 HOH 3 41 41 HOH TIP D . J 4 HOH 4 43 43 HOH TIP D . J 4 HOH 5 49 49 HOH TIP D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3LRN _cell.length_a 41.490 _cell.length_b 96.330 _cell.length_c 103.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LRN _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3LRN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_percent_sol 55.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '15% PEG 3,350, ammonium sulfate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG ? ? ? 1 2 1 'ammonium sulfate' ? ? ? 1 3 2 PEG ? ? ? 1 4 2 'ammonium sulfate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 174 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2009-09-01 _diffrn_detector.details Osmic # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Osmic mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.542 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.542 # _reflns.entry_id 3LRN _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.6 _reflns.number_obs 13150 _reflns.number_all 13326 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_Rsym_value 0.086 _reflns.pdbx_netI_over_sigmaI 27.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 96.3 _reflns_shell.Rmerge_I_obs 0.587 _reflns_shell.pdbx_Rsym_value 0.587 _reflns_shell.meanI_over_sigI_obs 3.2 _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1240 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LRN _refine.ls_number_reflns_obs 12530 _refine.ls_number_reflns_all 13326 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.5 _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs 95.58 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all 0.221 _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.282 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1295 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method Rfree _refine.details ? _refine.pdbx_starting_model 'free human RIG-I CTD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1998 _refine_hist.pdbx_number_atoms_nucleic_acid 620 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 2674 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 41.5 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.68 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.6 _refine_ls_shell.d_res_low 2.69 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.221 _refine_ls_shell.percent_reflns_obs 94 _refine_ls_shell.R_factor_R_free 0.282 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 1295 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 12530 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3LRN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3LRN _struct.title ;Crystal structure of human RIG-I CTD bound to a 14 bp GC 5' ppp dsRNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LRN _struct_keywords.pdbx_keywords Hydrolase/RNA _struct_keywords.text ;Innate immunity, viral RNA sensing, RIG-I like receptors, Antiviral defense, ATP-binding, Helicase, Immune response, Metal-binding, Nucleotide-binding, RNA-binding, Hydrolase-RNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DDX58_HUMAN O95786 1 ;KENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTF EIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM ; 803 ? 2 PDB 3LRN 3LRN 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LRN A 1 ? 121 ? O95786 803 ? 923 ? 803 923 2 1 3LRN B 1 ? 121 ? O95786 803 ? 923 ? 803 923 3 2 3LRN C 1 ? 14 ? 3LRN 0 ? 13 ? 0 13 4 2 3LRN D 1 ? 14 ? 3LRN 0 ? 13 ? 0 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LRN SER A 27 ? UNP O95786 CYS 829 'engineered mutation' 829 1 2 3LRN SER B 27 ? UNP O95786 CYS 829 'engineered mutation' 829 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4540 ? 1 MORE -25 ? 1 'SSA (A^2)' 16930 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 33 ? CYS A 39 ? GLY A 835 CYS A 841 1 ? 7 HELX_P HELX_P2 2 LYS A 105 ? PHE A 109 ? LYS A 907 PHE A 911 5 ? 5 HELX_P HELX_P3 3 ASP B 34 ? GLU B 38 ? ASP B 836 GLU B 840 5 ? 5 HELX_P HELX_P4 4 LYS B 105 ? PHE B 109 ? LYS B 907 PHE B 911 5 ? 5 HELX_P HELX_P5 5 ASP B 117 ? MET B 121 ? ASP B 919 MET B 923 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C GTP 1 "O3'" ? ? ? 1_555 C G 2 P ? ? C GTP 0 C G 1 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale2 covale both ? D GTP 1 "O3'" ? ? ? 1_555 D G 2 P ? ? D GTP 0 D G 1 1_555 ? ? ? ? ? ? ? 1.614 ? ? metalc1 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 8 SG ? ? A ZN 1 A CYS 810 1_555 ? ? ? ? ? ? ? 2.665 ? ? metalc2 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 11 SG ? ? A ZN 1 A CYS 813 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc3 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 62 SG ? ? A ZN 1 A CYS 864 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc4 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 67 SG ? ? A ZN 1 A CYS 869 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc5 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 8 SG ? ? B ZN 2 B CYS 810 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc6 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 11 SG ? ? B ZN 2 B CYS 813 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 62 SG ? ? B ZN 2 B CYS 864 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc8 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 67 SG ? ? B ZN 2 B CYS 869 1_555 ? ? ? ? ? ? ? 2.232 ? ? hydrog1 hydrog ? ? C GTP 1 N1 ? ? ? 1_555 D C 14 N3 ? ? C GTP 0 D C 13 1_555 ? ? ? ? ? ? 'GTP-C PAIR' ? ? ? hydrog2 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 13 N3 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 13 O2 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 13 N4 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 12 N1 ? ? C C 2 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 12 O6 ? ? C C 2 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 12 N2 ? ? C C 2 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 4 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 4 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 4 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 5 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C G 6 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 5 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C G 6 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 5 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 6 N2 ? ? C C 8 D G 5 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog24 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 9 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 9 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 9 D C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 12 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 11 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 12 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 11 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 12 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 11 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 13 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C C 13 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C C 13 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 14 N3 ? ? ? 1_555 D GTP 1 N1 ? ? C C 13 D GTP 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 14 N4 ? ? ? 1_555 D GTP 1 O6 ? ? C C 13 D GTP 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 14 O2 ? ? ? 1_555 D GTP 1 N2 ? ? C C 13 D GTP 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 11 ? A CYS 813 ? 1_555 109.9 ? 2 SG ? A CYS 8 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 62 ? A CYS 864 ? 1_555 105.1 ? 3 SG ? A CYS 11 ? A CYS 813 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 62 ? A CYS 864 ? 1_555 100.9 ? 4 SG ? A CYS 8 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 67 ? A CYS 869 ? 1_555 93.6 ? 5 SG ? A CYS 11 ? A CYS 813 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 67 ? A CYS 869 ? 1_555 119.7 ? 6 SG ? A CYS 62 ? A CYS 864 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 67 ? A CYS 869 ? 1_555 125.9 ? 7 SG ? B CYS 8 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 11 ? B CYS 813 ? 1_555 110.6 ? 8 SG ? B CYS 8 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 62 ? B CYS 864 ? 1_555 114.7 ? 9 SG ? B CYS 11 ? B CYS 813 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 62 ? B CYS 864 ? 1_555 114.5 ? 10 SG ? B CYS 8 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 67 ? B CYS 869 ? 1_555 98.9 ? 11 SG ? B CYS 11 ? B CYS 813 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 67 ? B CYS 869 ? 1_555 111.1 ? 12 SG ? B CYS 62 ? B CYS 864 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 67 ? B CYS 869 ? 1_555 105.8 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? D ? 4 ? E ? 2 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 14 ? TYR A 17 ? LEU A 816 TYR A 819 A 2 LYS A 4 ? CYS A 8 ? LYS A 806 CYS A 810 A 3 PHE A 90 ? ASP A 94 ? PHE A 892 ASP A 896 A 4 GLN A 100 ? THR A 101 ? GLN A 902 THR A 903 B 1 VAL A 21 ? ILE A 24 ? VAL A 823 ILE A 826 B 2 HIS A 28 ? VAL A 31 ? HIS A 830 VAL A 833 C 1 PHE A 40 ? PHE A 51 ? PHE A 842 PHE A 853 C 2 PHE A 54 ? CYS A 62 ? PHE A 856 CYS A 864 C 3 ASP A 70 ? TYR A 77 ? ASP A 872 TYR A 879 C 4 PHE A 80 ? ILE A 85 ? PHE A 882 ILE A 887 D 1 LEU B 14 ? TYR B 17 ? LEU B 816 TYR B 819 D 2 LYS B 4 ? CYS B 8 ? LYS B 806 CYS B 810 D 3 PHE B 90 ? ASP B 94 ? PHE B 892 ASP B 896 D 4 GLN B 100 ? THR B 101 ? GLN B 902 THR B 903 E 1 VAL B 21 ? ILE B 24 ? VAL B 823 ILE B 826 E 2 HIS B 28 ? VAL B 31 ? HIS B 830 VAL B 833 F 1 PHE B 40 ? PRO B 44 ? PHE B 842 PRO B 846 F 2 LYS B 56 ? CYS B 62 ? LYS B 858 CYS B 864 F 3 ASP B 70 ? TYR B 77 ? ASP B 872 TYR B 879 F 4 PHE B 80 ? ILE B 85 ? PHE B 882 ILE B 887 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 15 ? O ALA A 817 N LEU A 6 ? N LEU A 808 A 2 3 N LEU A 7 ? N LEU A 809 O VAL A 91 ? O VAL A 893 A 3 4 N VAL A 92 ? N VAL A 894 O THR A 101 ? O THR A 903 B 1 2 N ILE A 24 ? N ILE A 826 O HIS A 28 ? O HIS A 830 C 1 2 N LYS A 49 ? N LYS A 851 O LYS A 56 ? O LYS A 858 C 2 3 N ILE A 60 ? N ILE A 862 O GLY A 72 ? O GLY A 874 C 3 4 N TYR A 77 ? N TYR A 879 O PHE A 80 ? O PHE A 882 D 1 2 O CYS B 16 ? O CYS B 818 N LEU B 6 ? N LEU B 808 D 2 3 N LEU B 7 ? N LEU B 809 O VAL B 91 ? O VAL B 893 D 3 4 N VAL B 92 ? N VAL B 894 O THR B 101 ? O THR B 903 E 1 2 N ILE B 24 ? N ILE B 826 O HIS B 28 ? O HIS B 830 F 1 2 N ARG B 43 ? N ARG B 845 O LYS B 59 ? O LYS B 861 F 2 3 N ARG B 57 ? N ARG B 859 O HIS B 74 ? O HIS B 876 F 3 4 N TYR B 77 ? N TYR B 879 O PHE B 80 ? O PHE B 882 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1 ? 4 'BINDING SITE FOR RESIDUE ZN A 1' AC2 Software B ZN 2 ? 4 'BINDING SITE FOR RESIDUE ZN B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 8 ? CYS A 810 . ? 1_555 ? 2 AC1 4 CYS A 11 ? CYS A 813 . ? 1_555 ? 3 AC1 4 CYS A 62 ? CYS A 864 . ? 1_555 ? 4 AC1 4 CYS A 67 ? CYS A 869 . ? 1_555 ? 5 AC2 4 CYS B 8 ? CYS B 810 . ? 1_555 ? 6 AC2 4 CYS B 11 ? CYS B 813 . ? 1_555 ? 7 AC2 4 CYS B 62 ? CYS B 864 . ? 1_555 ? 8 AC2 4 CYS B 67 ? CYS B 869 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 914 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O2'" _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 C _pdbx_validate_symm_contact.auth_seq_id_2 13 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_445 _pdbx_validate_symm_contact.dist 1.89 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C GTP 0 ? ? "O3'" C GTP 0 ? ? P C G 1 ? ? 102.73 119.70 -16.97 1.20 Y 2 1 "C3'" D GTP 0 ? ? "O3'" D GTP 0 ? ? P D G 1 ? ? 101.33 119.70 -18.37 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 814 ? ? 87.12 3.33 2 1 SER A 829 ? ? -149.40 -15.12 3 1 PRO A 846 ? ? -15.49 122.56 4 1 PRO A 850 ? ? -45.90 164.55 5 1 SER A 854 ? ? 49.07 -124.15 6 1 ALA A 865 ? ? -79.27 24.86 7 1 GLN A 867 ? ? -17.11 -87.54 8 1 SER A 870 ? ? 39.58 45.07 9 1 LYS A 880 ? ? 59.40 -119.70 10 1 LYS B 814 ? ? 81.30 2.00 11 1 ALA B 817 ? ? -107.20 -64.79 12 1 SER B 829 ? ? -143.21 -11.18 13 1 LYS B 851 ? ? -146.01 -156.62 14 1 GLN B 852 ? ? -166.70 92.88 15 1 SER B 854 ? ? 46.67 -135.57 16 1 ARG B 866 ? ? -49.62 105.99 17 1 ASN B 868 ? ? -69.85 3.38 18 1 LYS B 880 ? ? 52.80 -120.00 19 1 GLU B 922 ? ? -63.86 2.56 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C GTP 1 C GTP 0 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 D GTP 1 D GTP 0 ? G "GUANOSINE-5'-TRIPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 C OP3 O N N 74 C P P N N 75 C OP1 O N N 76 C OP2 O N N 77 C "O5'" O N N 78 C "C5'" C N N 79 C "C4'" C N R 80 C "O4'" O N N 81 C "C3'" C N S 82 C "O3'" O N N 83 C "C2'" C N R 84 C "O2'" O N N 85 C "C1'" C N R 86 C N1 N N N 87 C C2 C N N 88 C O2 O N N 89 C N3 N N N 90 C C4 C N N 91 C N4 N N N 92 C C5 C N N 93 C C6 C N N 94 C HOP3 H N N 95 C HOP2 H N N 96 C "H5'" H N N 97 C "H5''" H N N 98 C "H4'" H N N 99 C "H3'" H N N 100 C "HO3'" H N N 101 C "H2'" H N N 102 C "HO2'" H N N 103 C "H1'" H N N 104 C H41 H N N 105 C H42 H N N 106 C H5 H N N 107 C H6 H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 G OP3 O N N 123 G P P N N 124 G OP1 O N N 125 G OP2 O N N 126 G "O5'" O N N 127 G "C5'" C N N 128 G "C4'" C N R 129 G "O4'" O N N 130 G "C3'" C N S 131 G "O3'" O N N 132 G "C2'" C N R 133 G "O2'" O N N 134 G "C1'" C N R 135 G N9 N Y N 136 G C8 C Y N 137 G N7 N Y N 138 G C5 C Y N 139 G C6 C N N 140 G O6 O N N 141 G N1 N N N 142 G C2 C N N 143 G N2 N N N 144 G N3 N N N 145 G C4 C Y N 146 G HOP3 H N N 147 G HOP2 H N N 148 G "H5'" H N N 149 G "H5''" H N N 150 G "H4'" H N N 151 G "H3'" H N N 152 G "HO3'" H N N 153 G "H2'" H N N 154 G "HO2'" H N N 155 G "H1'" H N N 156 G H8 H N N 157 G H1 H N N 158 G H21 H N N 159 G H22 H N N 160 GLN N N N N 161 GLN CA C N S 162 GLN C C N N 163 GLN O O N N 164 GLN CB C N N 165 GLN CG C N N 166 GLN CD C N N 167 GLN OE1 O N N 168 GLN NE2 N N N 169 GLN OXT O N N 170 GLN H H N N 171 GLN H2 H N N 172 GLN HA H N N 173 GLN HB2 H N N 174 GLN HB3 H N N 175 GLN HG2 H N N 176 GLN HG3 H N N 177 GLN HE21 H N N 178 GLN HE22 H N N 179 GLN HXT H N N 180 GLU N N N N 181 GLU CA C N S 182 GLU C C N N 183 GLU O O N N 184 GLU CB C N N 185 GLU CG C N N 186 GLU CD C N N 187 GLU OE1 O N N 188 GLU OE2 O N N 189 GLU OXT O N N 190 GLU H H N N 191 GLU H2 H N N 192 GLU HA H N N 193 GLU HB2 H N N 194 GLU HB3 H N N 195 GLU HG2 H N N 196 GLU HG3 H N N 197 GLU HE2 H N N 198 GLU HXT H N N 199 GLY N N N N 200 GLY CA C N N 201 GLY C C N N 202 GLY O O N N 203 GLY OXT O N N 204 GLY H H N N 205 GLY H2 H N N 206 GLY HA2 H N N 207 GLY HA3 H N N 208 GLY HXT H N N 209 GTP PG P N N 210 GTP O1G O N N 211 GTP O2G O N N 212 GTP O3G O N N 213 GTP O3B O N N 214 GTP PB P N N 215 GTP O1B O N N 216 GTP O2B O N N 217 GTP O3A O N N 218 GTP PA P N N 219 GTP O1A O N N 220 GTP O2A O N N 221 GTP "O5'" O N N 222 GTP "C5'" C N N 223 GTP "C4'" C N R 224 GTP "O4'" O N N 225 GTP "C3'" C N S 226 GTP "O3'" O N N 227 GTP "C2'" C N R 228 GTP "O2'" O N N 229 GTP "C1'" C N R 230 GTP N9 N Y N 231 GTP C8 C Y N 232 GTP N7 N Y N 233 GTP C5 C Y N 234 GTP C6 C N N 235 GTP O6 O N N 236 GTP N1 N N N 237 GTP C2 C N N 238 GTP N2 N N N 239 GTP N3 N N N 240 GTP C4 C Y N 241 GTP HOG2 H N N 242 GTP HOG3 H N N 243 GTP HOB2 H N N 244 GTP HOA2 H N N 245 GTP "H5'" H N N 246 GTP "H5''" H N N 247 GTP "H4'" H N N 248 GTP "H3'" H N N 249 GTP "HO3'" H N N 250 GTP "H2'" H N N 251 GTP "HO2'" H N N 252 GTP "H1'" H N N 253 GTP H8 H N N 254 GTP HN1 H N N 255 GTP HN21 H N N 256 GTP HN22 H N N 257 HIS N N N N 258 HIS CA C N S 259 HIS C C N N 260 HIS O O N N 261 HIS CB C N N 262 HIS CG C Y N 263 HIS ND1 N Y N 264 HIS CD2 C Y N 265 HIS CE1 C Y N 266 HIS NE2 N Y N 267 HIS OXT O N N 268 HIS H H N N 269 HIS H2 H N N 270 HIS HA H N N 271 HIS HB2 H N N 272 HIS HB3 H N N 273 HIS HD1 H N N 274 HIS HD2 H N N 275 HIS HE1 H N N 276 HIS HE2 H N N 277 HIS HXT H N N 278 HOH O O N N 279 HOH H1 H N N 280 HOH H2 H N N 281 ILE N N N N 282 ILE CA C N S 283 ILE C C N N 284 ILE O O N N 285 ILE CB C N S 286 ILE CG1 C N N 287 ILE CG2 C N N 288 ILE CD1 C N N 289 ILE OXT O N N 290 ILE H H N N 291 ILE H2 H N N 292 ILE HA H N N 293 ILE HB H N N 294 ILE HG12 H N N 295 ILE HG13 H N N 296 ILE HG21 H N N 297 ILE HG22 H N N 298 ILE HG23 H N N 299 ILE HD11 H N N 300 ILE HD12 H N N 301 ILE HD13 H N N 302 ILE HXT H N N 303 LEU N N N N 304 LEU CA C N S 305 LEU C C N N 306 LEU O O N N 307 LEU CB C N N 308 LEU CG C N N 309 LEU CD1 C N N 310 LEU CD2 C N N 311 LEU OXT O N N 312 LEU H H N N 313 LEU H2 H N N 314 LEU HA H N N 315 LEU HB2 H N N 316 LEU HB3 H N N 317 LEU HG H N N 318 LEU HD11 H N N 319 LEU HD12 H N N 320 LEU HD13 H N N 321 LEU HD21 H N N 322 LEU HD22 H N N 323 LEU HD23 H N N 324 LEU HXT H N N 325 LYS N N N N 326 LYS CA C N S 327 LYS C C N N 328 LYS O O N N 329 LYS CB C N N 330 LYS CG C N N 331 LYS CD C N N 332 LYS CE C N N 333 LYS NZ N N N 334 LYS OXT O N N 335 LYS H H N N 336 LYS H2 H N N 337 LYS HA H N N 338 LYS HB2 H N N 339 LYS HB3 H N N 340 LYS HG2 H N N 341 LYS HG3 H N N 342 LYS HD2 H N N 343 LYS HD3 H N N 344 LYS HE2 H N N 345 LYS HE3 H N N 346 LYS HZ1 H N N 347 LYS HZ2 H N N 348 LYS HZ3 H N N 349 LYS HXT H N N 350 MET N N N N 351 MET CA C N S 352 MET C C N N 353 MET O O N N 354 MET CB C N N 355 MET CG C N N 356 MET SD S N N 357 MET CE C N N 358 MET OXT O N N 359 MET H H N N 360 MET H2 H N N 361 MET HA H N N 362 MET HB2 H N N 363 MET HB3 H N N 364 MET HG2 H N N 365 MET HG3 H N N 366 MET HE1 H N N 367 MET HE2 H N N 368 MET HE3 H N N 369 MET HXT H N N 370 PHE N N N N 371 PHE CA C N S 372 PHE C C N N 373 PHE O O N N 374 PHE CB C N N 375 PHE CG C Y N 376 PHE CD1 C Y N 377 PHE CD2 C Y N 378 PHE CE1 C Y N 379 PHE CE2 C Y N 380 PHE CZ C Y N 381 PHE OXT O N N 382 PHE H H N N 383 PHE H2 H N N 384 PHE HA H N N 385 PHE HB2 H N N 386 PHE HB3 H N N 387 PHE HD1 H N N 388 PHE HD2 H N N 389 PHE HE1 H N N 390 PHE HE2 H N N 391 PHE HZ H N N 392 PHE HXT H N N 393 PRO N N N N 394 PRO CA C N S 395 PRO C C N N 396 PRO O O N N 397 PRO CB C N N 398 PRO CG C N N 399 PRO CD C N N 400 PRO OXT O N N 401 PRO H H N N 402 PRO HA H N N 403 PRO HB2 H N N 404 PRO HB3 H N N 405 PRO HG2 H N N 406 PRO HG3 H N N 407 PRO HD2 H N N 408 PRO HD3 H N N 409 PRO HXT H N N 410 SER N N N N 411 SER CA C N S 412 SER C C N N 413 SER O O N N 414 SER CB C N N 415 SER OG O N N 416 SER OXT O N N 417 SER H H N N 418 SER H2 H N N 419 SER HA H N N 420 SER HB2 H N N 421 SER HB3 H N N 422 SER HG H N N 423 SER HXT H N N 424 THR N N N N 425 THR CA C N S 426 THR C C N N 427 THR O O N N 428 THR CB C N R 429 THR OG1 O N N 430 THR CG2 C N N 431 THR OXT O N N 432 THR H H N N 433 THR H2 H N N 434 THR HA H N N 435 THR HB H N N 436 THR HG1 H N N 437 THR HG21 H N N 438 THR HG22 H N N 439 THR HG23 H N N 440 THR HXT H N N 441 TRP N N N N 442 TRP CA C N S 443 TRP C C N N 444 TRP O O N N 445 TRP CB C N N 446 TRP CG C Y N 447 TRP CD1 C Y N 448 TRP CD2 C Y N 449 TRP NE1 N Y N 450 TRP CE2 C Y N 451 TRP CE3 C Y N 452 TRP CZ2 C Y N 453 TRP CZ3 C Y N 454 TRP CH2 C Y N 455 TRP OXT O N N 456 TRP H H N N 457 TRP H2 H N N 458 TRP HA H N N 459 TRP HB2 H N N 460 TRP HB3 H N N 461 TRP HD1 H N N 462 TRP HE1 H N N 463 TRP HE3 H N N 464 TRP HZ2 H N N 465 TRP HZ3 H N N 466 TRP HH2 H N N 467 TRP HXT H N N 468 TYR N N N N 469 TYR CA C N S 470 TYR C C N N 471 TYR O O N N 472 TYR CB C N N 473 TYR CG C Y N 474 TYR CD1 C Y N 475 TYR CD2 C Y N 476 TYR CE1 C Y N 477 TYR CE2 C Y N 478 TYR CZ C Y N 479 TYR OH O N N 480 TYR OXT O N N 481 TYR H H N N 482 TYR H2 H N N 483 TYR HA H N N 484 TYR HB2 H N N 485 TYR HB3 H N N 486 TYR HD1 H N N 487 TYR HD2 H N N 488 TYR HE1 H N N 489 TYR HE2 H N N 490 TYR HH H N N 491 TYR HXT H N N 492 VAL N N N N 493 VAL CA C N S 494 VAL C C N N 495 VAL O O N N 496 VAL CB C N N 497 VAL CG1 C N N 498 VAL CG2 C N N 499 VAL OXT O N N 500 VAL H H N N 501 VAL H2 H N N 502 VAL HA H N N 503 VAL HB H N N 504 VAL HG11 H N N 505 VAL HG12 H N N 506 VAL HG13 H N N 507 VAL HG21 H N N 508 VAL HG22 H N N 509 VAL HG23 H N N 510 VAL HXT H N N 511 ZN ZN ZN N N 512 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 C OP3 P sing N N 70 C OP3 HOP3 sing N N 71 C P OP1 doub N N 72 C P OP2 sing N N 73 C P "O5'" sing N N 74 C OP2 HOP2 sing N N 75 C "O5'" "C5'" sing N N 76 C "C5'" "C4'" sing N N 77 C "C5'" "H5'" sing N N 78 C "C5'" "H5''" sing N N 79 C "C4'" "O4'" sing N N 80 C "C4'" "C3'" sing N N 81 C "C4'" "H4'" sing N N 82 C "O4'" "C1'" sing N N 83 C "C3'" "O3'" sing N N 84 C "C3'" "C2'" sing N N 85 C "C3'" "H3'" sing N N 86 C "O3'" "HO3'" sing N N 87 C "C2'" "O2'" sing N N 88 C "C2'" "C1'" sing N N 89 C "C2'" "H2'" sing N N 90 C "O2'" "HO2'" sing N N 91 C "C1'" N1 sing N N 92 C "C1'" "H1'" sing N N 93 C N1 C2 sing N N 94 C N1 C6 sing N N 95 C C2 O2 doub N N 96 C C2 N3 sing N N 97 C N3 C4 doub N N 98 C C4 N4 sing N N 99 C C4 C5 sing N N 100 C N4 H41 sing N N 101 C N4 H42 sing N N 102 C C5 C6 doub N N 103 C C5 H5 sing N N 104 C C6 H6 sing N N 105 CYS N CA sing N N 106 CYS N H sing N N 107 CYS N H2 sing N N 108 CYS CA C sing N N 109 CYS CA CB sing N N 110 CYS CA HA sing N N 111 CYS C O doub N N 112 CYS C OXT sing N N 113 CYS CB SG sing N N 114 CYS CB HB2 sing N N 115 CYS CB HB3 sing N N 116 CYS SG HG sing N N 117 CYS OXT HXT sing N N 118 G OP3 P sing N N 119 G OP3 HOP3 sing N N 120 G P OP1 doub N N 121 G P OP2 sing N N 122 G P "O5'" sing N N 123 G OP2 HOP2 sing N N 124 G "O5'" "C5'" sing N N 125 G "C5'" "C4'" sing N N 126 G "C5'" "H5'" sing N N 127 G "C5'" "H5''" sing N N 128 G "C4'" "O4'" sing N N 129 G "C4'" "C3'" sing N N 130 G "C4'" "H4'" sing N N 131 G "O4'" "C1'" sing N N 132 G "C3'" "O3'" sing N N 133 G "C3'" "C2'" sing N N 134 G "C3'" "H3'" sing N N 135 G "O3'" "HO3'" sing N N 136 G "C2'" "O2'" sing N N 137 G "C2'" "C1'" sing N N 138 G "C2'" "H2'" sing N N 139 G "O2'" "HO2'" sing N N 140 G "C1'" N9 sing N N 141 G "C1'" "H1'" sing N N 142 G N9 C8 sing Y N 143 G N9 C4 sing Y N 144 G C8 N7 doub Y N 145 G C8 H8 sing N N 146 G N7 C5 sing Y N 147 G C5 C6 sing N N 148 G C5 C4 doub Y N 149 G C6 O6 doub N N 150 G C6 N1 sing N N 151 G N1 C2 sing N N 152 G N1 H1 sing N N 153 G C2 N2 sing N N 154 G C2 N3 doub N N 155 G N2 H21 sing N N 156 G N2 H22 sing N N 157 G N3 C4 sing N N 158 GLN N CA sing N N 159 GLN N H sing N N 160 GLN N H2 sing N N 161 GLN CA C sing N N 162 GLN CA CB sing N N 163 GLN CA HA sing N N 164 GLN C O doub N N 165 GLN C OXT sing N N 166 GLN CB CG sing N N 167 GLN CB HB2 sing N N 168 GLN CB HB3 sing N N 169 GLN CG CD sing N N 170 GLN CG HG2 sing N N 171 GLN CG HG3 sing N N 172 GLN CD OE1 doub N N 173 GLN CD NE2 sing N N 174 GLN NE2 HE21 sing N N 175 GLN NE2 HE22 sing N N 176 GLN OXT HXT sing N N 177 GLU N CA sing N N 178 GLU N H sing N N 179 GLU N H2 sing N N 180 GLU CA C sing N N 181 GLU CA CB sing N N 182 GLU CA HA sing N N 183 GLU C O doub N N 184 GLU C OXT sing N N 185 GLU CB CG sing N N 186 GLU CB HB2 sing N N 187 GLU CB HB3 sing N N 188 GLU CG CD sing N N 189 GLU CG HG2 sing N N 190 GLU CG HG3 sing N N 191 GLU CD OE1 doub N N 192 GLU CD OE2 sing N N 193 GLU OE2 HE2 sing N N 194 GLU OXT HXT sing N N 195 GLY N CA sing N N 196 GLY N H sing N N 197 GLY N H2 sing N N 198 GLY CA C sing N N 199 GLY CA HA2 sing N N 200 GLY CA HA3 sing N N 201 GLY C O doub N N 202 GLY C OXT sing N N 203 GLY OXT HXT sing N N 204 GTP PG O1G doub N N 205 GTP PG O2G sing N N 206 GTP PG O3G sing N N 207 GTP PG O3B sing N N 208 GTP O2G HOG2 sing N N 209 GTP O3G HOG3 sing N N 210 GTP O3B PB sing N N 211 GTP PB O1B doub N N 212 GTP PB O2B sing N N 213 GTP PB O3A sing N N 214 GTP O2B HOB2 sing N N 215 GTP O3A PA sing N N 216 GTP PA O1A doub N N 217 GTP PA O2A sing N N 218 GTP PA "O5'" sing N N 219 GTP O2A HOA2 sing N N 220 GTP "O5'" "C5'" sing N N 221 GTP "C5'" "C4'" sing N N 222 GTP "C5'" "H5'" sing N N 223 GTP "C5'" "H5''" sing N N 224 GTP "C4'" "O4'" sing N N 225 GTP "C4'" "C3'" sing N N 226 GTP "C4'" "H4'" sing N N 227 GTP "O4'" "C1'" sing N N 228 GTP "C3'" "O3'" sing N N 229 GTP "C3'" "C2'" sing N N 230 GTP "C3'" "H3'" sing N N 231 GTP "O3'" "HO3'" sing N N 232 GTP "C2'" "O2'" sing N N 233 GTP "C2'" "C1'" sing N N 234 GTP "C2'" "H2'" sing N N 235 GTP "O2'" "HO2'" sing N N 236 GTP "C1'" N9 sing N N 237 GTP "C1'" "H1'" sing N N 238 GTP N9 C8 sing Y N 239 GTP N9 C4 sing Y N 240 GTP C8 N7 doub Y N 241 GTP C8 H8 sing N N 242 GTP N7 C5 sing Y N 243 GTP C5 C6 sing N N 244 GTP C5 C4 doub Y N 245 GTP C6 O6 doub N N 246 GTP C6 N1 sing N N 247 GTP N1 C2 sing N N 248 GTP N1 HN1 sing N N 249 GTP C2 N2 sing N N 250 GTP C2 N3 doub N N 251 GTP N2 HN21 sing N N 252 GTP N2 HN22 sing N N 253 GTP N3 C4 sing N N 254 HIS N CA sing N N 255 HIS N H sing N N 256 HIS N H2 sing N N 257 HIS CA C sing N N 258 HIS CA CB sing N N 259 HIS CA HA sing N N 260 HIS C O doub N N 261 HIS C OXT sing N N 262 HIS CB CG sing N N 263 HIS CB HB2 sing N N 264 HIS CB HB3 sing N N 265 HIS CG ND1 sing Y N 266 HIS CG CD2 doub Y N 267 HIS ND1 CE1 doub Y N 268 HIS ND1 HD1 sing N N 269 HIS CD2 NE2 sing Y N 270 HIS CD2 HD2 sing N N 271 HIS CE1 NE2 sing Y N 272 HIS CE1 HE1 sing N N 273 HIS NE2 HE2 sing N N 274 HIS OXT HXT sing N N 275 HOH O H1 sing N N 276 HOH O H2 sing N N 277 ILE N CA sing N N 278 ILE N H sing N N 279 ILE N H2 sing N N 280 ILE CA C sing N N 281 ILE CA CB sing N N 282 ILE CA HA sing N N 283 ILE C O doub N N 284 ILE C OXT sing N N 285 ILE CB CG1 sing N N 286 ILE CB CG2 sing N N 287 ILE CB HB sing N N 288 ILE CG1 CD1 sing N N 289 ILE CG1 HG12 sing N N 290 ILE CG1 HG13 sing N N 291 ILE CG2 HG21 sing N N 292 ILE CG2 HG22 sing N N 293 ILE CG2 HG23 sing N N 294 ILE CD1 HD11 sing N N 295 ILE CD1 HD12 sing N N 296 ILE CD1 HD13 sing N N 297 ILE OXT HXT sing N N 298 LEU N CA sing N N 299 LEU N H sing N N 300 LEU N H2 sing N N 301 LEU CA C sing N N 302 LEU CA CB sing N N 303 LEU CA HA sing N N 304 LEU C O doub N N 305 LEU C OXT sing N N 306 LEU CB CG sing N N 307 LEU CB HB2 sing N N 308 LEU CB HB3 sing N N 309 LEU CG CD1 sing N N 310 LEU CG CD2 sing N N 311 LEU CG HG sing N N 312 LEU CD1 HD11 sing N N 313 LEU CD1 HD12 sing N N 314 LEU CD1 HD13 sing N N 315 LEU CD2 HD21 sing N N 316 LEU CD2 HD22 sing N N 317 LEU CD2 HD23 sing N N 318 LEU OXT HXT sing N N 319 LYS N CA sing N N 320 LYS N H sing N N 321 LYS N H2 sing N N 322 LYS CA C sing N N 323 LYS CA CB sing N N 324 LYS CA HA sing N N 325 LYS C O doub N N 326 LYS C OXT sing N N 327 LYS CB CG sing N N 328 LYS CB HB2 sing N N 329 LYS CB HB3 sing N N 330 LYS CG CD sing N N 331 LYS CG HG2 sing N N 332 LYS CG HG3 sing N N 333 LYS CD CE sing N N 334 LYS CD HD2 sing N N 335 LYS CD HD3 sing N N 336 LYS CE NZ sing N N 337 LYS CE HE2 sing N N 338 LYS CE HE3 sing N N 339 LYS NZ HZ1 sing N N 340 LYS NZ HZ2 sing N N 341 LYS NZ HZ3 sing N N 342 LYS OXT HXT sing N N 343 MET N CA sing N N 344 MET N H sing N N 345 MET N H2 sing N N 346 MET CA C sing N N 347 MET CA CB sing N N 348 MET CA HA sing N N 349 MET C O doub N N 350 MET C OXT sing N N 351 MET CB CG sing N N 352 MET CB HB2 sing N N 353 MET CB HB3 sing N N 354 MET CG SD sing N N 355 MET CG HG2 sing N N 356 MET CG HG3 sing N N 357 MET SD CE sing N N 358 MET CE HE1 sing N N 359 MET CE HE2 sing N N 360 MET CE HE3 sing N N 361 MET OXT HXT sing N N 362 PHE N CA sing N N 363 PHE N H sing N N 364 PHE N H2 sing N N 365 PHE CA C sing N N 366 PHE CA CB sing N N 367 PHE CA HA sing N N 368 PHE C O doub N N 369 PHE C OXT sing N N 370 PHE CB CG sing N N 371 PHE CB HB2 sing N N 372 PHE CB HB3 sing N N 373 PHE CG CD1 doub Y N 374 PHE CG CD2 sing Y N 375 PHE CD1 CE1 sing Y N 376 PHE CD1 HD1 sing N N 377 PHE CD2 CE2 doub Y N 378 PHE CD2 HD2 sing N N 379 PHE CE1 CZ doub Y N 380 PHE CE1 HE1 sing N N 381 PHE CE2 CZ sing Y N 382 PHE CE2 HE2 sing N N 383 PHE CZ HZ sing N N 384 PHE OXT HXT sing N N 385 PRO N CA sing N N 386 PRO N CD sing N N 387 PRO N H sing N N 388 PRO CA C sing N N 389 PRO CA CB sing N N 390 PRO CA HA sing N N 391 PRO C O doub N N 392 PRO C OXT sing N N 393 PRO CB CG sing N N 394 PRO CB HB2 sing N N 395 PRO CB HB3 sing N N 396 PRO CG CD sing N N 397 PRO CG HG2 sing N N 398 PRO CG HG3 sing N N 399 PRO CD HD2 sing N N 400 PRO CD HD3 sing N N 401 PRO OXT HXT sing N N 402 SER N CA sing N N 403 SER N H sing N N 404 SER N H2 sing N N 405 SER CA C sing N N 406 SER CA CB sing N N 407 SER CA HA sing N N 408 SER C O doub N N 409 SER C OXT sing N N 410 SER CB OG sing N N 411 SER CB HB2 sing N N 412 SER CB HB3 sing N N 413 SER OG HG sing N N 414 SER OXT HXT sing N N 415 THR N CA sing N N 416 THR N H sing N N 417 THR N H2 sing N N 418 THR CA C sing N N 419 THR CA CB sing N N 420 THR CA HA sing N N 421 THR C O doub N N 422 THR C OXT sing N N 423 THR CB OG1 sing N N 424 THR CB CG2 sing N N 425 THR CB HB sing N N 426 THR OG1 HG1 sing N N 427 THR CG2 HG21 sing N N 428 THR CG2 HG22 sing N N 429 THR CG2 HG23 sing N N 430 THR OXT HXT sing N N 431 TRP N CA sing N N 432 TRP N H sing N N 433 TRP N H2 sing N N 434 TRP CA C sing N N 435 TRP CA CB sing N N 436 TRP CA HA sing N N 437 TRP C O doub N N 438 TRP C OXT sing N N 439 TRP CB CG sing N N 440 TRP CB HB2 sing N N 441 TRP CB HB3 sing N N 442 TRP CG CD1 doub Y N 443 TRP CG CD2 sing Y N 444 TRP CD1 NE1 sing Y N 445 TRP CD1 HD1 sing N N 446 TRP CD2 CE2 doub Y N 447 TRP CD2 CE3 sing Y N 448 TRP NE1 CE2 sing Y N 449 TRP NE1 HE1 sing N N 450 TRP CE2 CZ2 sing Y N 451 TRP CE3 CZ3 doub Y N 452 TRP CE3 HE3 sing N N 453 TRP CZ2 CH2 doub Y N 454 TRP CZ2 HZ2 sing N N 455 TRP CZ3 CH2 sing Y N 456 TRP CZ3 HZ3 sing N N 457 TRP CH2 HH2 sing N N 458 TRP OXT HXT sing N N 459 TYR N CA sing N N 460 TYR N H sing N N 461 TYR N H2 sing N N 462 TYR CA C sing N N 463 TYR CA CB sing N N 464 TYR CA HA sing N N 465 TYR C O doub N N 466 TYR C OXT sing N N 467 TYR CB CG sing N N 468 TYR CB HB2 sing N N 469 TYR CB HB3 sing N N 470 TYR CG CD1 doub Y N 471 TYR CG CD2 sing Y N 472 TYR CD1 CE1 sing Y N 473 TYR CD1 HD1 sing N N 474 TYR CD2 CE2 doub Y N 475 TYR CD2 HD2 sing N N 476 TYR CE1 CZ doub Y N 477 TYR CE1 HE1 sing N N 478 TYR CE2 CZ sing Y N 479 TYR CE2 HE2 sing N N 480 TYR CZ OH sing N N 481 TYR OH HH sing N N 482 TYR OXT HXT sing N N 483 VAL N CA sing N N 484 VAL N H sing N N 485 VAL N H2 sing N N 486 VAL CA C sing N N 487 VAL CA CB sing N N 488 VAL CA HA sing N N 489 VAL C O doub N N 490 VAL C OXT sing N N 491 VAL CB CG1 sing N N 492 VAL CB CG2 sing N N 493 VAL CB HB sing N N 494 VAL CG1 HG11 sing N N 495 VAL CG1 HG12 sing N N 496 VAL CG1 HG13 sing N N 497 VAL CG2 HG21 sing N N 498 VAL CG2 HG22 sing N N 499 VAL CG2 HG23 sing N N 500 VAL OXT HXT sing N N 501 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3LRN 'double helix' 3LRN 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C GTP 1 1_555 D C 14 1_555 -0.646 0.359 -0.755 -20.299 -15.820 -4.027 1 C_GTP0:C13_D C 0 ? D 13 ? ? 1 1 C G 2 1_555 D C 13 1_555 0.156 0.255 -0.248 -17.487 -18.575 0.552 2 C_G1:C12_D C 1 ? D 12 ? 19 1 1 C C 3 1_555 D G 12 1_555 0.930 -0.247 0.416 1.040 -7.539 3.808 3 C_C2:G11_D C 2 ? D 11 ? 19 1 1 C G 4 1_555 D C 11 1_555 0.041 -0.147 0.094 9.789 -7.146 2.702 4 C_G3:C10_D C 3 ? D 10 ? 19 1 1 C C 5 1_555 D G 10 1_555 0.262 -0.042 -0.895 16.097 -6.376 2.188 5 C_C4:G9_D C 4 ? D 9 ? 19 1 1 C G 6 1_555 D C 9 1_555 -0.381 -0.187 -0.089 5.555 -2.868 -2.605 6 C_G5:C8_D C 5 ? D 8 ? 19 1 1 C C 7 1_555 D G 8 1_555 0.089 0.012 -0.400 16.282 -1.089 1.882 7 C_C6:G7_D C 6 ? D 7 ? 19 1 1 C G 8 1_555 D C 7 1_555 -0.468 0.087 -0.974 -3.960 -12.796 3.127 8 C_G7:C6_D C 7 ? D 6 ? 19 1 1 C C 9 1_555 D G 6 1_555 0.682 0.275 -0.247 3.136 6.828 4.991 9 C_C8:G5_D C 8 ? D 5 ? ? 1 1 C G 10 1_555 D C 5 1_555 -0.528 0.059 -0.047 -3.770 -7.352 4.726 10 C_G9:C4_D C 9 ? D 4 ? 19 1 1 C C 11 1_555 D G 4 1_555 0.696 -0.334 0.184 -3.589 -4.698 4.804 11 C_C10:G3_D C 10 ? D 3 ? 19 1 1 C G 12 1_555 D C 3 1_555 -0.865 -0.322 0.383 -3.605 -1.579 0.372 12 C_G11:C2_D C 11 ? D 2 ? 19 1 1 C C 13 1_555 D G 2 1_555 -0.191 -0.110 -0.458 8.359 -11.624 -2.704 13 C_C12:G1_D C 12 ? D 1 ? 19 1 1 C C 14 1_555 D GTP 1 1_555 0.178 0.152 -0.219 15.250 -4.777 0.869 14 C_C13:GTP0_D C 13 ? D 0 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C GTP 1 1_555 D C 14 1_555 C G 2 1_555 D C 13 1_555 -0.055 -0.602 3.032 -0.186 6.272 38.629 -1.586 0.061 2.903 9.405 0.279 39.116 1 CC_GTP0G1:C12C13_DD C 0 ? D 13 ? C 1 ? D 12 ? 1 C G 2 1_555 D C 13 1_555 C C 3 1_555 D G 12 1_555 0.657 -0.607 2.721 -4.421 8.403 34.971 -1.922 -1.556 2.418 13.674 7.194 36.198 2 CC_G1C2:G11C12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 C C 3 1_555 D G 12 1_555 C G 4 1_555 D C 11 1_555 0.520 -1.676 2.983 4.688 10.249 24.120 -5.872 -0.112 2.164 22.988 -10.516 26.587 3 CC_C2G3:C10G11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C G 4 1_555 D C 11 1_555 C C 5 1_555 D G 10 1_555 0.588 -1.916 2.954 4.653 3.497 28.953 -4.417 -0.280 2.768 6.906 -9.189 29.520 4 CC_G3C4:G9C10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C C 5 1_555 D G 10 1_555 C G 6 1_555 D C 9 1_555 -0.967 -1.917 3.817 -7.568 3.535 25.977 -5.101 -0.163 3.659 7.617 16.308 27.265 5 CC_C4G5:C8G9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 C G 6 1_555 D C 9 1_555 C C 7 1_555 D G 8 1_555 0.585 -2.064 3.052 0.389 -2.332 34.830 -3.104 -0.919 3.186 -3.891 -0.649 34.907 6 CC_G5C6:G7C8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C C 7 1_555 D G 8 1_555 C G 8 1_555 D C 7 1_555 -0.554 -1.475 3.864 2.241 11.310 27.915 -5.352 1.563 3.000 22.280 -4.415 30.158 7 CC_C6G7:C6G7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C G 8 1_555 D C 7 1_555 C C 9 1_555 D G 6 1_555 0.051 -1.113 3.283 -5.764 4.628 35.383 -2.437 -0.881 3.072 7.513 9.358 36.123 8 CC_G7C8:G5C6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 C C 9 1_555 D G 6 1_555 C G 10 1_555 D C 5 1_555 0.382 -2.032 3.465 1.128 -3.349 28.177 -3.298 -0.494 3.689 -6.844 -2.306 28.394 9 CC_C8G9:C4G5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 C G 10 1_555 D C 5 1_555 C C 11 1_555 D G 4 1_555 -0.213 -2.284 3.323 0.919 7.536 32.393 -5.173 0.517 2.731 13.282 -1.620 33.247 10 CC_G9C10:G3C4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 C C 11 1_555 D G 4 1_555 C G 12 1_555 D C 3 1_555 0.019 -1.781 3.201 -2.256 1.665 23.805 -4.807 -0.747 3.056 4.019 5.444 23.967 11 CC_C10G11:C2G3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 C G 12 1_555 D C 3 1_555 C C 13 1_555 D G 2 1_555 -0.475 -1.380 3.034 6.956 3.829 34.761 -2.751 1.678 2.729 6.307 -11.459 35.629 12 CC_G11C12:G1C2_DD C 11 ? D 2 ? C 12 ? D 1 ? 1 C C 13 1_555 D G 2 1_555 C C 14 1_555 D GTP 1 1_555 -0.041 -1.096 3.314 -2.580 2.058 36.001 -2.058 -0.300 3.244 3.321 4.164 36.147 13 CC_C12C13:GTP0G1_DD C 12 ? D 1 ? C 13 ? D 0 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'free human RIG-I CTD' # _atom_sites.entry_id 3LRN _atom_sites.fract_transf_matrix[1][1] 0.024102 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010381 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009671 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_