HEADER CELL ADHESION 15-FEB-10 3LT6 TITLE A TRANSITION FROM STRONG RIGHT-HANDED TO CANONICAL LEFT-HANDED TITLE 2 SUPERCOILING IN A CONSERVED COILED COIL SEGMENT OF TRIMERIC TITLE 3 AUTOTRANSPORTER ADHESINS - THE MUTANT 4 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESIN YADA; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: TRIMERIC COILED COIL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: YADA, INVA, YOP1, YOPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS YADA, TRIMERIC AUTOTRANSPORTER, CORE RESIDUES, CELL ADHESION, CELL KEYWDS 2 MEMBRANE, CELL OUTER MEMBRANE, MEMBRANE, VIRULENCE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,B.HERNANDEZ-ALVAREZ,A.N.LUPAS REVDAT 4 01-NOV-17 3LT6 1 REMARK REVDAT 3 13-JUL-11 3LT6 1 VERSN REVDAT 2 05-MAY-10 3LT6 1 JRNL REVDAT 1 31-MAR-10 3LT6 0 JRNL AUTH B.H.ALVAREZ,M.GRUBER,A.URSINUS,S.DUNIN-HORKAWICZ,A.N.LUPAS, JRNL AUTH 2 K.ZETH JRNL TITL A TRANSITION FROM STRONG RIGHT-HANDED TO CANONICAL JRNL TITL 2 LEFT-HANDED SUPERCOILING IN A CONSERVED COILED-COIL SEGMENT JRNL TITL 3 OF TRIMERIC AUTOTRANSPORTER ADHESINS. JRNL REF J.STRUCT.BIOL. V. 170 236 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20178846 JRNL DOI 10.1016/J.JSB.2010.02.009 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 37715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.46000 REMARK 3 B22 (A**2) : 28.32000 REMARK 3 B33 (A**2) : -18.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2885 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3875 ; 2.003 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;34.869 ;24.720 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;18.461 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.665 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2022 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1789 ; 1.338 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2886 ; 2.041 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1096 ; 3.613 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 986 ; 5.610 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 403 ; 0.86 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 403 ; 0.92 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 403 ; 0.97 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 403 ; 0.93 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 E (A): 403 ; 0.88 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 F (A): 403 ; 0.89 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 403 ; 4.80 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 403 ; 3.14 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 403 ; 3.49 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 403 ; 3.71 ; 10.00 REMARK 3 LOOSE THERMAL 1 E (A**2): 403 ; 2.81 ; 10.00 REMARK 3 LOOSE THERMAL 1 F (A**2): 403 ; 2.78 ; 10.00 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.760 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-K,-L REMARK 3 TWIN FRACTION : 0.240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4950 -3.0100 -22.5840 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.1163 REMARK 3 T33: 0.1310 T12: -0.0058 REMARK 3 T13: -0.0046 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.4605 L22: 2.5179 REMARK 3 L33: 9.5913 L12: -0.3665 REMARK 3 L13: 0.2321 L23: 3.9326 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: -0.0254 S13: -0.0521 REMARK 3 S21: -0.1021 S22: -0.1397 S23: 0.0738 REMARK 3 S31: 0.0281 S32: -0.6950 S33: 0.0174 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -4 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1130 -11.1450 -20.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.0978 REMARK 3 T33: 0.1590 T12: -0.0067 REMARK 3 T13: -0.0020 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.3178 L22: 2.1805 REMARK 3 L33: 6.2230 L12: -0.0193 REMARK 3 L13: 0.0099 L23: 3.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.0179 S13: -0.1243 REMARK 3 S21: 0.1788 S22: 0.0737 S23: -0.0503 REMARK 3 S31: 0.6165 S32: 0.0877 S33: -0.1401 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -4 C 50 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5400 -4.9040 -24.7010 REMARK 3 T TENSOR REMARK 3 T11: 0.0046 T22: 0.0139 REMARK 3 T33: 0.0345 T12: -0.0031 REMARK 3 T13: 0.0003 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.3949 L22: 3.5752 REMARK 3 L33: 11.0885 L12: -0.0099 REMARK 3 L13: -0.1974 L23: 5.5917 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.0233 S13: -0.0362 REMARK 3 S21: -0.0908 S22: 0.0317 S23: -0.0296 REMARK 3 S31: -0.1768 S32: 0.1592 S33: -0.0599 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -5 D 50 REMARK 3 ORIGIN FOR THE GROUP (A): 55.4830 -3.4040 -27.9560 REMARK 3 T TENSOR REMARK 3 T11: 0.0177 T22: 0.0245 REMARK 3 T33: 0.0234 T12: 0.0121 REMARK 3 T13: -0.0053 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.4631 L22: 3.7775 REMARK 3 L33: 12.0493 L12: -0.1187 REMARK 3 L13: 0.1034 L23: 5.9793 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.0107 S13: -0.0310 REMARK 3 S21: 0.1018 S22: 0.0293 S23: -0.0112 REMARK 3 S31: 0.3474 S32: 0.2270 S33: -0.0727 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E -5 E 49 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3580 -4.2000 -28.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.0073 T22: 0.0456 REMARK 3 T33: 0.0233 T12: 0.0044 REMARK 3 T13: 0.0016 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.2850 L22: 2.0482 REMARK 3 L33: 11.0804 L12: 0.0692 REMARK 3 L13: -0.5172 L23: 3.6619 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.0524 S13: 0.0107 REMARK 3 S21: 0.0704 S22: -0.0648 S23: 0.0206 REMARK 3 S31: 0.1160 S32: -0.2771 S33: 0.0303 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F -5 F 50 REMARK 3 ORIGIN FOR THE GROUP (A): 51.0780 3.4700 -31.6100 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.1034 REMARK 3 T33: 0.1552 T12: 0.0142 REMARK 3 T13: -0.0009 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.2429 L22: 2.6966 REMARK 3 L33: 9.1901 L12: -0.0673 REMARK 3 L13: -0.2256 L23: 4.2668 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: -0.0294 S13: 0.0767 REMARK 3 S21: -0.1971 S22: 0.0280 S23: -0.0610 REMARK 3 S31: -0.4899 S32: 0.0396 S33: -0.1284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.88000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 47 REMARK 465 SER A 48 REMARK 465 SER A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 LEU A 52 REMARK 465 ASN A 53 REMARK 465 SER A 54 REMARK 465 LEU A 55 REMARK 465 PHE A 56 REMARK 465 LYS B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 LYS C -7 REMARK 465 SER C -6 REMARK 465 SER C -5 REMARK 465 LEU C 55 REMARK 465 PHE C 56 REMARK 465 LYS D -7 REMARK 465 SER D -6 REMARK 465 ALA E 50 REMARK 465 ALA E 51 REMARK 465 LEU E 52 REMARK 465 ASN E 53 REMARK 465 SER E 54 REMARK 465 LEU E 55 REMARK 465 PHE E 56 REMARK 465 LYS F -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 56 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER C 54 O REMARK 470 LEU D 55 CG CD1 CD2 REMARK 470 PHE D 56 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE F 56 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 56 O HOH B 70 2.14 REMARK 500 OD1 ASP B 36 NH2 ARG C 34 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -6 -17.27 -147.37 REMARK 500 LEU C 52 -4.61 -55.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER F -6 SER F -5 147.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H7X RELATED DB: PDB REMARK 900 RELATED ID: 3H7Z RELATED DB: PDB REMARK 900 RELATED ID: 3LT7 RELATED DB: PDB DBREF 3LT6 A -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT6 B -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT6 C -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT6 D -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT6 E -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT6 F -7 56 UNP P31489 YADA1_YEREN 333 396 SEQADV 3LT6 MSE A 28 UNP P31489 PHE 368 CONFLICT SEQADV 3LT6 HIS A 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT6 GLU A 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT6 GLU A 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT6 LYS A 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT6 LEU A 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT6 LEU A 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT6 LEU A 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT6 MSE B 28 UNP P31489 PHE 368 CONFLICT SEQADV 3LT6 HIS B 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT6 GLU B 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT6 GLU B 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT6 LYS B 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT6 LEU B 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT6 LEU B 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT6 LEU B 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT6 MSE C 28 UNP P31489 PHE 368 CONFLICT SEQADV 3LT6 HIS C 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT6 GLU C 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT6 GLU C 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT6 LYS C 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT6 LEU C 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT6 LEU C 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT6 LEU C 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT6 MSE D 28 UNP P31489 PHE 368 CONFLICT SEQADV 3LT6 HIS D 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT6 GLU D 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT6 GLU D 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT6 LYS D 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT6 LEU D 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT6 LEU D 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT6 LEU D 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT6 MSE E 28 UNP P31489 PHE 368 CONFLICT SEQADV 3LT6 HIS E 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT6 GLU E 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT6 GLU E 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT6 LYS E 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT6 LEU E 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT6 LEU E 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT6 LEU E 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT6 MSE F 28 UNP P31489 PHE 368 CONFLICT SEQADV 3LT6 HIS F 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT6 GLU F 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT6 GLU F 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT6 LYS F 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT6 LEU F 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT6 LEU F 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT6 LEU F 45 UNP P31489 GLY 385 CONFLICT SEQRES 1 A 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 A 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 A 64 GLU SER ASN GLN TYR THR ASP HIS LYS MSE HIS GLN LEU SEQRES 4 A 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 A 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 B 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 B 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 B 64 GLU SER ASN GLN TYR THR ASP HIS LYS MSE HIS GLN LEU SEQRES 4 B 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 B 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 C 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 C 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 C 64 GLU SER ASN GLN TYR THR ASP HIS LYS MSE HIS GLN LEU SEQRES 4 C 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 C 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 D 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 D 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 D 64 GLU SER ASN GLN TYR THR ASP HIS LYS MSE HIS GLN LEU SEQRES 4 D 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 D 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 E 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 E 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 E 64 GLU SER ASN GLN TYR THR ASP HIS LYS MSE HIS GLN LEU SEQRES 4 E 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 E 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 F 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 F 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 F 64 GLU SER ASN GLN TYR THR ASP HIS LYS MSE HIS GLN LEU SEQRES 4 F 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 F 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE MODRES 3LT6 MSE A 28 MET SELENOMETHIONINE MODRES 3LT6 MSE B 28 MET SELENOMETHIONINE MODRES 3LT6 MSE C 28 MET SELENOMETHIONINE MODRES 3LT6 MSE D 28 MET SELENOMETHIONINE MODRES 3LT6 MSE E 28 MET SELENOMETHIONINE MODRES 3LT6 MSE F 28 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE B 28 8 HET MSE C 28 8 HET MSE D 28 13 HET MSE E 28 8 HET MSE F 28 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 7 HOH *65(H2 O) HELIX 1 1 SER A -6 LEU A 46 1 53 HELIX 2 2 HIS B -4 PHE B 56 1 61 HELIX 3 3 HIS C -4 LEU C 52 1 57 HELIX 4 4 SER D -5 PHE D 56 1 62 HELIX 5 5 LYS E -7 SER E 49 1 57 HELIX 6 6 SER F -6 PHE F 56 1 63 LINK C LYS A 27 N MSE A 28 1555 1555 1.36 LINK C MSE A 28 N HIS A 29 1555 1555 1.32 LINK C LYS B 27 N MSE B 28 1555 1555 1.34 LINK C MSE B 28 N HIS B 29 1555 1555 1.35 LINK C LYS C 27 N MSE C 28 1555 1555 1.34 LINK C MSE C 28 N HIS C 29 1555 1555 1.32 LINK C LYS D 27 N MSE D 28 1555 1555 1.34 LINK C MSE D 28 N HIS D 29 1555 1555 1.31 LINK C LYS E 27 N MSE E 28 1555 1555 1.35 LINK C MSE E 28 N HIS E 29 1555 1555 1.36 LINK C LYS F 27 N MSE F 28 1555 1555 1.32 LINK C MSE F 28 N HIS F 29 1555 1555 1.34 CISPEP 1 LYS A -7 SER A -6 0 16.19 CISPEP 2 ASN C 53 SER C 54 0 3.56 CRYST1 40.000 115.760 48.080 90.00 89.93 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025000 0.000000 -0.000031 0.00000 SCALE2 0.000000 0.008639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020799 0.00000