HEADER OXIDOREDUCTASE 16-FEB-10 3LTV TITLE MOUSE-HUMAN SOD1 CHIMERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN],SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 2-81 FROM MOUSE PROTEIN, RESIDUES 82-154 FROM COMPND 5 HUMAN PROTEIN,RESIDUES 2-81 FROM MOUSE PROTEIN, RESIDUES 82-154 FROM COMPND 6 HUMAN PROTEIN; COMPND 7 SYNONYM: SUPEROXIDE DISMUTASE 1,HSOD1; COMPND 8 EC: 1.15.1.1,1.15.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 GENE: SOD1, SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKA8H KEYWDS OXIDOREDUCTASE, ANTIOXIDANT, METAL-BINDING, AMYOTROPHIC LATERAL KEYWDS 2 SCLEROSIS, DISEASE MUTATION, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.V.SEETHARAMAN,A.B.TAYLOR,P.J.HART REVDAT 4 06-SEP-23 3LTV 1 REMARK LINK REVDAT 3 07-JUN-17 3LTV 1 COMPND SOURCE REMARK REVDAT 2 05-JAN-11 3LTV 1 JRNL REVDAT 1 08-SEP-10 3LTV 0 JRNL AUTH S.V.SEETHARAMAN,A.B.TAYLOR,S.HOLLOWAY,P.J.HART JRNL TITL STRUCTURES OF MOUSE SOD1 AND HUMAN/MOUSE SOD1 CHIMERAS. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 503 183 2010 JRNL REFN ISSN 0003-9861 JRNL PMID 20727846 JRNL DOI 10.1016/J.ABB.2010.08.014 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 34219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5614 - 5.6105 0.97 2730 135 0.1702 0.2302 REMARK 3 2 5.6105 - 4.4555 0.98 2712 154 0.1674 0.2139 REMARK 3 3 4.4555 - 3.8930 0.98 2689 151 0.1621 0.2358 REMARK 3 4 3.8930 - 3.5374 0.99 2712 136 0.1761 0.2256 REMARK 3 5 3.5374 - 3.2840 0.99 2738 126 0.1894 0.2428 REMARK 3 6 3.2840 - 3.0904 0.99 2694 143 0.2055 0.2938 REMARK 3 7 3.0904 - 2.9357 0.99 2736 138 0.2234 0.3187 REMARK 3 8 2.9357 - 2.8080 0.99 2721 133 0.2320 0.3142 REMARK 3 9 2.8080 - 2.6999 0.99 2711 149 0.2429 0.3335 REMARK 3 10 2.6999 - 2.6068 0.99 2704 158 0.2462 0.3591 REMARK 3 11 2.6068 - 2.5253 1.00 2738 138 0.2446 0.3373 REMARK 3 12 2.5253 - 2.4531 0.97 2610 163 0.2374 0.3001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 36.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.33970 REMARK 3 B22 (A**2) : 2.33970 REMARK 3 B33 (A**2) : -4.29560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6704 REMARK 3 ANGLE : 1.178 9046 REMARK 3 CHIRALITY : 0.075 1000 REMARK 3 PLANARITY : 0.004 1235 REMARK 3 DIHEDRAL : 19.391 2381 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000057723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SIDE-BOUNCE REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34238 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55000 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VR7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 25% PEG 4000, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.16467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.32933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.24700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.41167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.08233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 128 REMARK 465 GLY C 129 REMARK 465 GLY C 130 REMARK 465 GLN D 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 54.50 -143.65 REMARK 500 ALA B 145 148.69 -178.13 REMARK 500 HIS C 63 139.02 -39.54 REMARK 500 ASN C 65 63.90 -159.78 REMARK 500 LYS C 69 -157.06 -61.42 REMARK 500 ASP C 76 137.40 -39.29 REMARK 500 ASP C 90 -153.96 -66.09 REMARK 500 ASP C 92 34.73 -95.64 REMARK 500 CYS C 111 108.59 -47.06 REMARK 500 PRO D 28 152.09 -40.35 REMARK 500 SER E 25 -108.30 -35.94 REMARK 500 GLN E 34 128.14 -171.93 REMARK 500 GLN E 55 63.78 -112.99 REMARK 500 ASN E 65 77.13 -164.66 REMARK 500 SER E 68 55.45 28.51 REMARK 500 ASP E 76 165.52 -46.10 REMARK 500 SER E 107 163.31 176.37 REMARK 500 SER F 25 -88.09 -19.87 REMARK 500 GLN F 55 51.53 -106.94 REMARK 500 ASN F 65 59.56 -154.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 110.2 REMARK 620 3 HIS A 80 ND1 115.1 121.2 REMARK 620 4 ASP A 83 OD2 97.2 102.1 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 ND1 REMARK 620 2 HIS B 71 ND1 100.4 REMARK 620 3 HIS B 80 ND1 109.3 121.7 REMARK 620 4 ASP B 83 OD2 107.9 93.7 121.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 71 ND1 REMARK 620 2 HIS C 80 ND1 116.6 REMARK 620 3 ASP C 83 OD1 77.5 138.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 63 ND1 REMARK 620 2 HIS D 71 ND1 109.5 REMARK 620 3 HIS D 80 ND1 100.3 125.1 REMARK 620 4 ASP D 83 OD1 113.1 109.4 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 63 ND1 REMARK 620 2 HIS E 71 ND1 91.9 REMARK 620 3 HIS E 80 ND1 127.8 121.9 REMARK 620 4 ASP E 83 OD2 84.8 80.8 134.7 REMARK 620 5 ASP E 83 OD1 137.8 92.4 83.6 54.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 63 ND1 REMARK 620 2 HIS F 71 ND1 108.1 REMARK 620 3 HIS F 80 ND1 106.6 125.1 REMARK 620 4 ASP F 83 OD2 101.9 100.6 112.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GTT RELATED DB: PDB REMARK 900 MOUSE SOD1 REMARK 900 RELATED ID: 3GTV RELATED DB: PDB REMARK 900 HUMAN-MOUSE SOD1 CHIMERA DBREF 3LTV A 1 80 UNP P08228 SODC_MOUSE 2 81 DBREF 3LTV A 81 153 UNP P00441 SODC_HUMAN 82 154 DBREF 3LTV B 1 80 UNP P08228 SODC_MOUSE 2 81 DBREF 3LTV B 81 153 UNP P00441 SODC_HUMAN 82 154 DBREF 3LTV C 1 80 UNP P08228 SODC_MOUSE 2 81 DBREF 3LTV C 81 153 UNP P00441 SODC_HUMAN 82 154 DBREF 3LTV D 1 80 UNP P08228 SODC_MOUSE 2 81 DBREF 3LTV D 81 153 UNP P00441 SODC_HUMAN 82 154 DBREF 3LTV E 1 80 UNP P08228 SODC_MOUSE 2 81 DBREF 3LTV E 81 153 UNP P00441 SODC_HUMAN 82 154 DBREF 3LTV F 1 80 UNP P08228 SODC_MOUSE 2 81 DBREF 3LTV F 81 153 UNP P00441 SODC_HUMAN 82 154 SEQRES 1 A 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 A 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 A 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 A 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 B 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 B 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 B 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 B 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 B 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 B 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 B 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 B 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 B 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 B 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 B 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 B 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 C 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 C 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 C 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 C 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 C 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 C 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 C 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 C 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 C 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 C 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 C 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 C 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 D 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 D 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 D 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 D 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 D 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 D 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 D 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 D 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 D 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 D 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 D 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 D 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 E 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 E 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 E 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 E 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 E 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 E 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 E 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 E 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 E 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 E 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 E 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 E 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 153 ALA MET LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 F 153 VAL GLN GLY THR ILE HIS PHE GLU GLN LYS ALA SER GLY SEQRES 3 F 153 GLU PRO VAL VAL LEU SER GLY GLN ILE THR GLY LEU THR SEQRES 4 F 153 GLU GLY GLN HIS GLY PHE HIS VAL HIS GLN TYR GLY ASP SEQRES 5 F 153 ASN THR GLN GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 F 153 PRO HIS SER LYS LYS HIS GLY GLY PRO ALA ASP GLU GLU SEQRES 7 F 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 F 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 F 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 F 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 F 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 F 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET ZN A1001 1 HET ZN B1001 1 HET ZN C1001 1 HET ZN D1001 1 HET ZN E1001 1 HET ZN F1001 1 HETNAM ZN ZINC ION FORMUL 7 ZN 6(ZN 2+) FORMUL 13 HOH *145(H2 O) HELIX 1 1 GLN A 55 GLY A 61 5 7 HELIX 2 2 SER A 107 CYS A 111 5 5 HELIX 3 3 ASN A 131 GLY A 138 1 8 HELIX 4 4 GLN B 55 GLY B 61 5 7 HELIX 5 5 SER B 107 CYS B 111 5 5 HELIX 6 6 ASN B 131 GLY B 138 1 8 HELIX 7 7 GLN C 55 GLY C 61 5 7 HELIX 8 8 SER C 107 CYS C 111 5 5 HELIX 9 9 CYS D 57 GLY D 61 5 5 HELIX 10 10 SER D 107 CYS D 111 5 5 HELIX 11 11 GLU D 132 LYS D 136 5 5 HELIX 12 12 GLN E 55 GLY E 61 5 7 HELIX 13 13 ASN E 131 THR E 137 1 7 HELIX 14 14 GLN F 55 GLY F 61 5 7 HELIX 15 15 SER F 107 CYS F 111 5 5 HELIX 16 16 ASN F 131 GLY F 138 1 8 SHEET 1 A 5 ALA A 95 ASP A 101 0 SHEET 2 A 5 VAL A 29 THR A 36 -1 N LEU A 31 O ILE A 99 SHEET 3 A 5 GLN A 15 GLN A 22 -1 N GLU A 21 O VAL A 30 SHEET 4 A 5 MET A 2 LYS A 9 -1 N ALA A 4 O PHE A 20 SHEET 5 A 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 B 4 ASP A 83 ALA A 89 0 SHEET 2 B 4 GLY A 41 HIS A 48 -1 N GLY A 41 O ALA A 89 SHEET 3 B 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 B 4 ARG A 143 VAL A 148 -1 O GLY A 147 N LEU A 117 SHEET 1 C 5 ALA B 95 ASP B 101 0 SHEET 2 C 5 VAL B 29 THR B 36 -1 N VAL B 29 O ASP B 101 SHEET 3 C 5 GLN B 15 GLN B 22 -1 N HIS B 19 O SER B 32 SHEET 4 C 5 MET B 2 LYS B 9 -1 N LEU B 8 O GLY B 16 SHEET 5 C 5 GLY B 150 ILE B 151 -1 O GLY B 150 N VAL B 5 SHEET 1 D 4 ASP B 83 ALA B 89 0 SHEET 2 D 4 GLY B 41 HIS B 48 -1 N GLY B 41 O ALA B 89 SHEET 3 D 4 THR B 116 HIS B 120 -1 O THR B 116 N HIS B 48 SHEET 4 D 4 ARG B 143 VAL B 148 -1 O ALA B 145 N VAL B 119 SHEET 1 E 5 VAL C 97 ASP C 101 0 SHEET 2 E 5 VAL C 29 THR C 36 -1 N LEU C 31 O ILE C 99 SHEET 3 E 5 GLN C 15 GLN C 22 -1 N HIS C 19 O SER C 32 SHEET 4 E 5 MET C 2 LEU C 8 -1 N LEU C 8 O GLY C 16 SHEET 5 E 5 GLY C 150 ILE C 151 -1 O GLY C 150 N VAL C 5 SHEET 1 F 4 ASP C 83 ALA C 89 0 SHEET 2 F 4 GLY C 41 HIS C 48 -1 N GLY C 41 O ALA C 89 SHEET 3 F 4 THR C 116 HIS C 120 -1 O VAL C 118 N HIS C 46 SHEET 4 F 4 ARG C 143 VAL C 148 -1 O GLY C 147 N LEU C 117 SHEET 1 G 5 ALA D 95 ASP D 101 0 SHEET 2 G 5 VAL D 29 THR D 36 -1 N ILE D 35 O ALA D 95 SHEET 3 G 5 GLN D 15 GLN D 22 -1 N GLN D 15 O THR D 36 SHEET 4 G 5 MET D 2 LEU D 8 -1 N MET D 2 O GLN D 22 SHEET 5 G 5 GLY D 150 ILE D 151 -1 O GLY D 150 N VAL D 5 SHEET 1 H 4 ASN D 86 ALA D 89 0 SHEET 2 H 4 GLY D 41 HIS D 48 -1 N GLY D 41 O ALA D 89 SHEET 3 H 4 THR D 116 HIS D 120 -1 O THR D 116 N HIS D 48 SHEET 4 H 4 ARG D 143 VAL D 148 -1 O GLY D 147 N LEU D 117 SHEET 1 I 5 ALA E 95 ASP E 101 0 SHEET 2 I 5 VAL E 29 THR E 36 -1 N VAL E 29 O ASP E 101 SHEET 3 I 5 GLN E 15 GLN E 22 -1 N GLU E 21 O VAL E 30 SHEET 4 I 5 MET E 2 LEU E 8 -1 N ALA E 4 O PHE E 20 SHEET 5 I 5 GLY E 150 ILE E 151 -1 O GLY E 150 N VAL E 5 SHEET 1 J 4 ASP E 83 ALA E 89 0 SHEET 2 J 4 GLY E 41 HIS E 48 -1 N GLY E 41 O ALA E 89 SHEET 3 J 4 THR E 116 HIS E 120 -1 O VAL E 118 N HIS E 46 SHEET 4 J 4 ARG E 143 VAL E 148 -1 O GLY E 147 N LEU E 117 SHEET 1 K 5 ALA F 95 ASP F 101 0 SHEET 2 K 5 VAL F 29 THR F 36 -1 N LEU F 31 O ILE F 99 SHEET 3 K 5 GLN F 15 GLN F 22 -1 N HIS F 19 O SER F 32 SHEET 4 K 5 MET F 2 LYS F 9 -1 N ALA F 4 O PHE F 20 SHEET 5 K 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 L 4 ASP F 83 ALA F 89 0 SHEET 2 L 4 GLY F 41 HIS F 48 -1 N GLY F 41 O ALA F 89 SHEET 3 L 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 L 4 ARG F 143 VAL F 148 -1 O ALA F 145 N VAL F 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.11 SSBOND 2 CYS B 57 CYS B 146 1555 1555 2.07 SSBOND 3 CYS C 57 CYS C 146 1555 1555 2.05 SSBOND 4 CYS D 57 CYS D 146 1555 1555 2.08 SSBOND 5 CYS E 57 CYS E 146 1555 1555 2.07 SSBOND 6 CYS F 57 CYS F 146 1555 1555 2.08 LINK ND1 HIS A 63 ZN ZN A1001 1555 1555 2.10 LINK ND1 HIS A 71 ZN ZN A1001 1555 1555 2.13 LINK ND1 HIS A 80 ZN ZN A1001 1555 1555 2.06 LINK OD2 ASP A 83 ZN ZN A1001 1555 1555 1.98 LINK ND1 HIS B 63 ZN ZN B1001 1555 1555 2.20 LINK ND1 HIS B 71 ZN ZN B1001 1555 1555 2.11 LINK ND1 HIS B 80 ZN ZN B1001 1555 1555 2.12 LINK OD2 ASP B 83 ZN ZN B1001 1555 1555 1.92 LINK ND1 HIS C 71 ZN ZN C1001 1555 1555 2.60 LINK ND1 HIS C 80 ZN ZN C1001 1555 1555 2.14 LINK OD1 ASP C 83 ZN ZN C1001 1555 1555 2.63 LINK ND1 HIS D 63 ZN ZN D1001 1555 1555 1.95 LINK ND1 HIS D 71 ZN ZN D1001 1555 1555 1.87 LINK ND1 HIS D 80 ZN ZN D1001 1555 1555 2.68 LINK OD1 ASP D 83 ZN ZN D1001 1555 1555 2.11 LINK ND1 HIS E 63 ZN ZN E1001 1555 1555 2.22 LINK ND1 HIS E 71 ZN ZN E1001 1555 1555 2.39 LINK ND1 HIS E 80 ZN ZN E1001 1555 1555 1.93 LINK OD2 ASP E 83 ZN ZN E1001 1555 1555 2.30 LINK OD1 ASP E 83 ZN ZN E1001 1555 1555 2.50 LINK ND1 HIS F 63 ZN ZN F1001 1555 1555 1.98 LINK ND1 HIS F 71 ZN ZN F1001 1555 1555 2.12 LINK ND1 HIS F 80 ZN ZN F1001 1555 1555 2.11 LINK OD2 ASP F 83 ZN ZN F1001 1555 1555 2.02 SITE 1 AC1 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC2 4 HIS B 63 HIS B 71 HIS B 80 ASP B 83 SITE 1 AC3 4 HIS C 63 HIS C 71 HIS C 80 ASP C 83 SITE 1 AC4 4 HIS D 63 HIS D 71 HIS D 80 ASP D 83 SITE 1 AC5 4 HIS E 63 HIS E 71 HIS E 80 ASP E 83 SITE 1 AC6 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83 CRYST1 127.480 127.480 102.494 90.00 90.00 120.00 P 61 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007844 0.004529 0.000000 0.00000 SCALE2 0.000000 0.009058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009757 0.00000