HEADER LYASE 17-FEB-10 3LUL TITLE CRYSTAL STRUCTURE OF PUTATIVE 4-AMINO-4-DEOXYCHORISMATE LYASE. TITLE 2 (YP_094631.1) FROM LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. TITLE 3 PHILADELPHIA 1 AT 1.78 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-AMINO-4-DEOXYCHORISMATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 5 GENE: LPG0595; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE 4-AMINO-4-DEOXYCHORISMATE LYASE., STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, LYASE, PYRIDOXAL PHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3LUL 1 REMARK SEQADV REVDAT 4 17-JUL-19 3LUL 1 REMARK LINK REVDAT 3 08-NOV-17 3LUL 1 REMARK REVDAT 2 13-JUL-11 3LUL 1 VERSN REVDAT 1 02-MAR-10 3LUL 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE 4-AMINO-4-DEOXYCHORISMATE JRNL TITL 2 LYASE. (YP_094631.1) FROM LEGIONELLA PNEUMOPHILA SUBSP. JRNL TITL 3 PNEUMOPHILA STR. PHILADELPHIA 1 AT 1.78 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 52290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2645 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4327 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4635 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3156 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6330 ; 1.534 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7725 ; 1.018 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 597 ; 5.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;35.056 ;24.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;13.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;14.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5176 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 949 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2774 ; 1.749 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1116 ; 0.704 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4538 ; 2.961 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1861 ; 4.407 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1758 ; 6.809 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 268 5 REMARK 3 1 B 2 B 268 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1521 ; 0.230 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1863 ; 0.380 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1521 ; 1.240 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1863 ; 1.230 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): 68.3725 7.6343 28.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.0060 T22: 0.0089 REMARK 3 T33: 0.0142 T12: 0.0056 REMARK 3 T13: 0.0049 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.6426 L22: 0.6974 REMARK 3 L33: 0.4469 L12: 0.1487 REMARK 3 L13: 0.1593 L23: 0.0428 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0260 S13: -0.0591 REMARK 3 S21: 0.0419 S22: 0.0145 S23: 0.0378 REMARK 3 S31: -0.0339 S32: -0.0474 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 271 REMARK 3 ORIGIN FOR THE GROUP (A): 55.1432 14.1826 0.7042 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: 0.0524 REMARK 3 T33: 0.0165 T12: -0.0076 REMARK 3 T13: 0.0052 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.7150 L22: 0.9315 REMARK 3 L33: 0.8801 L12: -0.1787 REMARK 3 L13: 0.2215 L23: -0.1704 REMARK 3 S TENSOR REMARK 3 S11: -0.0958 S12: 0.0806 S13: -0.0626 REMARK 3 S21: -0.0536 S22: 0.0746 S23: 0.0465 REMARK 3 S31: -0.0650 S32: -0.1095 S33: 0.0212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. ETHYLENE GLYCOL (EDO) AND PHOSPHATE (PO4) MODELED WERE REMARK 3 PRESENT IN CRYO/CRYSTALLIZATION BUFFER. 5. ELECTRON DENSITY REMARK 3 REVEALS THAT RESIDUE LYS-140 IS COVALENTLY ATTACHED TO PYRIDOXAL- REMARK 3 5'-PHOSPHATE (PLP) VIA A SCHIFF-BASE LINKAGE. THIS COVALENTLY REMARK 3 MODIFIED RESIDUE HAS BEEN MODELED AS LYSINE-PYRIDOXAL-5'- REMARK 3 PHOSPHATE (LLP). REMARK 4 REMARK 4 3LUL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97951 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 45.592 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M (NH4)2HPO4, 20.0000% PEG-3350, REMARK 280 NO BUFFER PH 7.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.50400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.24900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.50400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.24900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 276 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 10 REMARK 465 ASP A 11 REMARK 465 SER A 271 REMARK 465 GLY B 0 REMARK 465 GLY B 10 REMARK 465 ASP B 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 MSE A 12 CG SE CE REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 MSE B 12 CG SE CE REMARK 470 LYS B 213 CD CE NZ REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 SER B 271 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 242 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 61 74.89 -100.95 REMARK 500 THR A 172 -82.47 -113.17 REMARK 500 CYS A 176 7.57 -157.66 REMARK 500 ASP A 248 -125.07 54.38 REMARK 500 TYR B 81 -72.86 -112.90 REMARK 500 THR B 172 -80.80 -111.84 REMARK 500 CYS B 176 11.65 -150.98 REMARK 500 ASP B 248 -124.24 53.20 REMARK 500 ASN B 249 45.05 -98.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 515 DISTANCE = 6.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 273 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 403139 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3LUL A 1 271 UNP Q5ZXY5 Q5ZXY5_LEGPH 1 271 DBREF 3LUL B 1 271 UNP Q5ZXY5 Q5ZXY5_LEGPH 1 271 SEQADV 3LUL GLY A 0 UNP Q5ZXY5 EXPRESSION TAG SEQADV 3LUL GLY B 0 UNP Q5ZXY5 EXPRESSION TAG SEQRES 1 A 272 GLY MSE PRO THR ARG VAL ILE GLU ASP LYS GLY ASP MSE SEQRES 2 A 272 THR PRO SER PHE GLY ILE ASP ASP ARG ILE PHE LEU GLY SEQRES 3 A 272 GLU GLY LEU PHE GLU THR ILE ARG VAL ASN SER SER LYS SEQRES 4 A 272 PRO SER PHE ALA TYR MSE HIS TRP GLU ARG LEU GLY ASN SEQRES 5 A 272 SER ALA ARG GLN LEU GLY ILE PRO PHE GLU ILE SER PHE SEQRES 6 A 272 ASP ASP TRP PHE GLU HIS LEU ILE GLN LYS ILE GLN LYS SEQRES 7 A 272 ASP ASN LEU TYR HIS GLY GLY ILE LYS ALA ILE LEU SER SEQRES 8 A 272 GLY GLY PRO ALA SER ARG GLY LEU ALA GLU ARG GLY GLN SEQRES 9 A 272 VAL SER GLN LEU ILE PHE GLN THR PHE ASN TYR SER ILE SEQRES 10 A 272 GLN LYS HIS PRO VAL ARG LEU ILE SER ILE ASN TRP LEU SEQRES 11 A 272 ARG ASP LYS ALA ASN PRO LEU TYR GLN LEU LLP SER VAL SEQRES 12 A 272 ASN TYR LEU GLU ALA ILE ILE ALA GLN ARG GLN ALA ILE SEQRES 13 A 272 ALA VAL GLY ALA ASP ASP ALA LEU PHE PHE ASN THR GLU SEQRES 14 A 272 ASN HIS VAL THR GLU THR THR CYS ALA ASN LEU PHE LEU SEQRES 15 A 272 ILE GLU ASN ASN ILE LEU TYR THR PRO ARG VAL GLU ASP SEQRES 16 A 272 GLY ILE LEU PRO GLY ILE THR ARG ALA ARG LEU ILE SER SEQRES 17 A 272 HIS CYS GLN GLN HIS LYS MSE SER VAL GLN GLU ILE SER SEQRES 18 A 272 LEU THR LYS LYS ARG ILE GLU ASP ALA ASP ALA VAL PHE SEQRES 19 A 272 LEU THR ASN SER LEU GLN GLY ILE ARG ARG VAL LEU SER SEQRES 20 A 272 LEU ASP ASN ILE ILE PHE GLU VAL ASN HIS PRO ILE ILE SEQRES 21 A 272 ASP LYS LEU ILE PHE LEU LEU ASN GLN ASP GLU SER SEQRES 1 B 272 GLY MSE PRO THR ARG VAL ILE GLU ASP LYS GLY ASP MSE SEQRES 2 B 272 THR PRO SER PHE GLY ILE ASP ASP ARG ILE PHE LEU GLY SEQRES 3 B 272 GLU GLY LEU PHE GLU THR ILE ARG VAL ASN SER SER LYS SEQRES 4 B 272 PRO SER PHE ALA TYR MSE HIS TRP GLU ARG LEU GLY ASN SEQRES 5 B 272 SER ALA ARG GLN LEU GLY ILE PRO PHE GLU ILE SER PHE SEQRES 6 B 272 ASP ASP TRP PHE GLU HIS LEU ILE GLN LYS ILE GLN LYS SEQRES 7 B 272 ASP ASN LEU TYR HIS GLY GLY ILE LYS ALA ILE LEU SER SEQRES 8 B 272 GLY GLY PRO ALA SER ARG GLY LEU ALA GLU ARG GLY GLN SEQRES 9 B 272 VAL SER GLN LEU ILE PHE GLN THR PHE ASN TYR SER ILE SEQRES 10 B 272 GLN LYS HIS PRO VAL ARG LEU ILE SER ILE ASN TRP LEU SEQRES 11 B 272 ARG ASP LYS ALA ASN PRO LEU TYR GLN LEU LLP SER VAL SEQRES 12 B 272 ASN TYR LEU GLU ALA ILE ILE ALA GLN ARG GLN ALA ILE SEQRES 13 B 272 ALA VAL GLY ALA ASP ASP ALA LEU PHE PHE ASN THR GLU SEQRES 14 B 272 ASN HIS VAL THR GLU THR THR CYS ALA ASN LEU PHE LEU SEQRES 15 B 272 ILE GLU ASN ASN ILE LEU TYR THR PRO ARG VAL GLU ASP SEQRES 16 B 272 GLY ILE LEU PRO GLY ILE THR ARG ALA ARG LEU ILE SER SEQRES 17 B 272 HIS CYS GLN GLN HIS LYS MSE SER VAL GLN GLU ILE SER SEQRES 18 B 272 LEU THR LYS LYS ARG ILE GLU ASP ALA ASP ALA VAL PHE SEQRES 19 B 272 LEU THR ASN SER LEU GLN GLY ILE ARG ARG VAL LEU SER SEQRES 20 B 272 LEU ASP ASN ILE ILE PHE GLU VAL ASN HIS PRO ILE ILE SEQRES 21 B 272 ASP LYS LEU ILE PHE LEU LEU ASN GLN ASP GLU SER MODRES 3LUL MSE A 1 MET SELENOMETHIONINE MODRES 3LUL MSE A 12 MET SELENOMETHIONINE MODRES 3LUL MSE A 44 MET SELENOMETHIONINE MODRES 3LUL LLP A 140 LYS MODRES 3LUL MSE A 214 MET SELENOMETHIONINE MODRES 3LUL MSE B 1 MET SELENOMETHIONINE MODRES 3LUL MSE B 12 MET SELENOMETHIONINE MODRES 3LUL MSE B 44 MET SELENOMETHIONINE MODRES 3LUL LLP B 140 LYS MODRES 3LUL MSE B 214 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 12 5 HET MSE A 44 13 HET LLP A 140 24 HET MSE A 214 13 HET MSE B 1 8 HET MSE B 12 5 HET MSE B 44 8 HET LLP B 140 24 HET MSE B 214 8 HET EDO A 272 4 HET EDO A 273 4 HET EDO A 274 4 HET EDO B 272 4 HET PO4 B 273 5 HETNAM MSE SELENOMETHIONINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *532(H2 O) HELIX 1 1 ASP A 20 GLY A 25 5 6 HELIX 2 2 PHE A 41 GLY A 57 1 17 HELIX 3 3 SER A 63 ASP A 78 1 16 HELIX 4 4 ASN A 134 LEU A 139 5 6 HELIX 5 5 TYR A 144 VAL A 157 1 14 HELIX 6 6 ARG A 191 GLY A 195 5 5 HELIX 7 7 GLY A 199 HIS A 212 1 14 HELIX 8 8 THR A 222 ASP A 228 1 7 HELIX 9 9 HIS A 256 GLU A 270 1 15 HELIX 10 10 ASP B 20 GLY B 25 5 6 HELIX 11 11 PHE B 41 GLY B 57 1 17 HELIX 12 12 SER B 63 ASP B 78 1 16 HELIX 13 13 ASN B 134 LEU B 139 5 6 HELIX 14 14 TYR B 144 VAL B 157 1 14 HELIX 15 15 ARG B 191 GLY B 195 5 5 HELIX 16 16 GLY B 199 HIS B 212 1 14 HELIX 17 17 THR B 222 ASP B 228 1 7 HELIX 18 18 HIS B 256 ASP B 269 1 14 SHEET 1 A 5 THR A 3 VAL A 5 0 SHEET 2 A 5 SER A 105 PHE A 112 1 O SER A 105 N ARG A 4 SHEET 3 A 5 GLY A 83 SER A 90 -1 N LYS A 86 O GLN A 110 SHEET 4 A 5 GLY A 27 ASN A 35 -1 N VAL A 34 O GLY A 83 SHEET 5 A 5 LYS A 38 PRO A 39 -1 O LYS A 38 N ASN A 35 SHEET 1 B 8 VAL A 216 GLU A 218 0 SHEET 2 B 8 ILE A 186 THR A 189 1 N LEU A 187 O GLN A 217 SHEET 3 B 8 ASN A 178 GLU A 183 -1 N LEU A 181 O TYR A 188 SHEET 4 B 8 VAL A 171 THR A 174 -1 N THR A 172 O LEU A 179 SHEET 5 B 8 ASP A 161 ASN A 166 -1 N PHE A 164 O GLU A 173 SHEET 6 B 8 VAL A 121 ARG A 130 1 N ILE A 124 O LEU A 163 SHEET 7 B 8 GLY A 240 LEU A 247 1 O SER A 246 N LEU A 123 SHEET 8 B 8 ILE A 250 ILE A 251 -1 O ILE A 250 N LEU A 247 SHEET 1 C 6 VAL A 216 GLU A 218 0 SHEET 2 C 6 ILE A 186 THR A 189 1 N LEU A 187 O GLN A 217 SHEET 3 C 6 ASN A 178 GLU A 183 -1 N LEU A 181 O TYR A 188 SHEET 4 C 6 ALA A 231 ASN A 236 -1 O ALA A 231 N ILE A 182 SHEET 5 C 6 GLY A 240 LEU A 247 -1 O ARG A 242 N LEU A 234 SHEET 6 C 6 ILE A 250 ILE A 251 -1 O ILE A 250 N LEU A 247 SHEET 1 D 5 THR B 3 VAL B 5 0 SHEET 2 D 5 SER B 105 PHE B 112 1 O SER B 105 N ARG B 4 SHEET 3 D 5 GLY B 83 SER B 90 -1 N LYS B 86 O GLN B 110 SHEET 4 D 5 GLY B 27 ASN B 35 -1 N ILE B 32 O ILE B 85 SHEET 5 D 5 LYS B 38 PRO B 39 -1 O LYS B 38 N ASN B 35 SHEET 1 E 8 VAL B 216 GLU B 218 0 SHEET 2 E 8 ILE B 186 THR B 189 1 N LEU B 187 O GLN B 217 SHEET 3 E 8 ASN B 178 GLU B 183 -1 N LEU B 181 O TYR B 188 SHEET 4 E 8 VAL B 171 THR B 174 -1 N THR B 172 O LEU B 179 SHEET 5 E 8 ASP B 161 ASN B 166 -1 N PHE B 164 O THR B 172 SHEET 6 E 8 VAL B 121 ARG B 130 1 N ILE B 126 O LEU B 163 SHEET 7 E 8 GLY B 240 LEU B 247 1 O ARG B 243 N VAL B 121 SHEET 8 E 8 ILE B 250 ILE B 251 -1 O ILE B 250 N LEU B 247 SHEET 1 F 6 VAL B 216 GLU B 218 0 SHEET 2 F 6 ILE B 186 THR B 189 1 N LEU B 187 O GLN B 217 SHEET 3 F 6 ASN B 178 GLU B 183 -1 N LEU B 181 O TYR B 188 SHEET 4 F 6 ALA B 231 ASN B 236 -1 O ALA B 231 N ILE B 182 SHEET 5 F 6 GLY B 240 LEU B 247 -1 O ARG B 242 N LEU B 234 SHEET 6 F 6 ILE B 250 ILE B 251 -1 O ILE B 250 N LEU B 247 LINK C MSE A 1 N PRO A 2 1555 1555 1.34 LINK C MSE A 12 N THR A 13 1555 1555 1.34 LINK C TYR A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N HIS A 45 1555 1555 1.33 LINK C LEU A 139 N LLP A 140 1555 1555 1.34 LINK C LLP A 140 N SER A 141 1555 1555 1.32 LINK C LYS A 213 N MSE A 214 1555 1555 1.33 LINK C MSE A 214 N SER A 215 1555 1555 1.33 LINK C MSE B 1 N PRO B 2 1555 1555 1.35 LINK C MSE B 12 N THR B 13 1555 1555 1.34 LINK C TYR B 43 N MSE B 44 1555 1555 1.33 LINK C MSE B 44 N HIS B 45 1555 1555 1.33 LINK C LEU B 139 N LLP B 140 1555 1555 1.33 LINK C LLP B 140 N SER B 141 1555 1555 1.34 LINK C LYS B 213 N MSE B 214 1555 1555 1.34 LINK C MSE B 214 N SER B 215 1555 1555 1.34 SITE 1 AC1 5 ASP A 161 LEU A 234 ARG A 242 HOH A 356 SITE 2 AC1 5 HOH A 399 SITE 1 AC2 5 GLN A 210 MSE A 214 VAL A 216 HOH A 470 SITE 2 AC2 5 HOH A 586 SITE 1 AC3 4 TYR A 114 SER A 115 HOH A 484 HOH B 532 SITE 1 AC4 4 MSE B 44 PRO B 198 HOH B 319 HOH B 406 SITE 1 AC5 4 PHE B 112 ASN B 113 TYR B 114 SER B 115 CRYST1 85.008 98.498 64.599 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015480 0.00000 HETATM 1 N MSE A 1 45.160 -10.810 24.738 1.00 44.82 N HETATM 2 CA MSE A 1 46.444 -10.237 25.238 1.00 43.81 C HETATM 3 C MSE A 1 46.951 -9.204 24.219 1.00 39.47 C HETATM 4 O MSE A 1 47.422 -9.574 23.147 1.00 42.41 O HETATM 5 CB MSE A 1 47.475 -11.359 25.439 1.00 45.90 C HETATM 6 CG MSE A 1 48.223 -11.302 26.770 1.00 53.46 C HETATM 7 SE MSE A 1 49.374 -9.734 27.008 0.75 70.45 SE HETATM 8 CE MSE A 1 50.708 -10.562 28.205 1.00 60.89 C