HEADER HYDROLASE 18-FEB-10 3LUZ TITLE CRYSTAL STRUCTURE OF EXTRAGENIC SUPPRESSOR PROTEIN SUHB FROM TITLE 2 BARTONELLA HENSELAE, VIA COMBINED IODIDE SAD MOLECULAR REPLACEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRAGENIC SUPPRESSOR PROTEIN SUHB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA HENSELAE; SOURCE 3 ORGANISM_COMMON: ROCHALIMAEA HENSELAE; SOURCE 4 ORGANISM_TAXID: 38323; SOURCE 5 GENE: SUHB, BH15030; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: AVA0421 KEYWDS NIAID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 SSGCID, BARTONELLA, CAT SCRATCH DISEASE, IODIDE PHASING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3LUZ 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3LUZ 1 JRNL REVDAT 2 06-JUL-11 3LUZ 1 JRNL REVDAT 1 02-MAR-10 3LUZ 0 JRNL AUTH J.ABENDROTH,A.S.GARDBERG,J.I.ROBINSON,J.S.CHRISTENSEN, JRNL AUTH 2 B.L.STAKER,P.J.MYLER,L.J.STEWART,T.E.EDWARDS JRNL TITL SAD PHASING USING IODIDE IONS IN A HIGH-THROUGHPUT JRNL TITL 2 STRUCTURAL GENOMICS ENVIRONMENT. JRNL REF J STRUCT FUNCT GENOMICS V. 12 83 2011 JRNL REFN JRNL PMID 21359836 JRNL DOI 10.1007/S10969-011-9101-7 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 27458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77000 REMARK 3 B22 (A**2) : 2.65000 REMARK 3 B33 (A**2) : -1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.615 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3597 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4866 ; 1.472 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 6.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;36.204 ;23.580 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;16.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.274 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2745 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 261 6 REMARK 3 1 B 2 B 261 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1665 ; 0.340 ; 5.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6562 9.9113 36.0102 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.1146 REMARK 3 T33: 0.0945 T12: 0.0066 REMARK 3 T13: -0.0124 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.5248 L22: -0.0490 REMARK 3 L33: 1.4251 L12: 0.1099 REMARK 3 L13: -0.5142 L23: -0.0241 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: -0.0293 S13: 0.1095 REMARK 3 S21: -0.0216 S22: 0.0334 S23: 0.0108 REMARK 3 S31: 0.0201 S32: -0.0928 S33: 0.0049 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2340 1.8562 9.9334 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.0897 REMARK 3 T33: 0.0460 T12: 0.0440 REMARK 3 T13: 0.0142 T23: 0.0501 REMARK 3 L TENSOR REMARK 3 L11: 0.8135 L22: 0.4598 REMARK 3 L33: 2.0318 L12: -0.7467 REMARK 3 L13: 0.1343 L23: -0.3877 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: 0.0791 S13: 0.1104 REMARK 3 S21: 0.0976 S22: -0.0302 S23: 0.0172 REMARK 3 S31: 0.1299 S32: 0.2036 S33: 0.1476 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3LUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QFL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24 MG/ML PROTEIN IN 0.2 M MGCL2, 0.1 M REMARK 280 HEPES PH 7.5, 30% PEG 400 SOAKED INTO 0.2 M MGCL2, 0.75 M KI, REMARK 280 0.1 M HEPES PH 8.2, 35% PEG 400; CRYSTAL TRACKING ID FOR GROWTH REMARK 280 206523D2 AND 206575A1 FOR IODIDE SOAK, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.64000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 28 REMARK 465 GLN A 29 REMARK 465 ASN A 30 REMARK 465 LEU A 31 REMARK 465 GLN A 32 REMARK 465 VAL A 33 REMARK 465 SER A 34 REMARK 465 LEU A 35 REMARK 465 LYS A 36 REMARK 465 GLY A 37 REMARK 465 PRO A 38 REMARK 465 ALA A 39 REMARK 465 HIS A 161 REMARK 465 LEU A 162 REMARK 465 GLY A 163 REMARK 465 ARG A 164 REMARK 465 PRO A 165 REMARK 465 GLY A 166 REMARK 465 HIS A 167 REMARK 465 GLY A 168 REMARK 465 GLY A 262 REMARK 465 ILE A 263 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 27 REMARK 465 VAL B 28 REMARK 465 GLN B 29 REMARK 465 ASN B 30 REMARK 465 LEU B 31 REMARK 465 GLN B 32 REMARK 465 VAL B 33 REMARK 465 SER B 34 REMARK 465 LEU B 35 REMARK 465 LYS B 36 REMARK 465 GLY B 37 REMARK 465 PRO B 38 REMARK 465 ALA B 39 REMARK 465 GLU B 70 REMARK 465 SER B 71 REMARK 465 GLU B 72 REMARK 465 PRO B 160 REMARK 465 HIS B 161 REMARK 465 LEU B 162 REMARK 465 GLY B 163 REMARK 465 ARG B 164 REMARK 465 PRO B 165 REMARK 465 GLY B 166 REMARK 465 HIS B 167 REMARK 465 GLY B 168 REMARK 465 THR B 169 REMARK 465 GLY B 262 REMARK 465 ILE B 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ASP A 40 CG OD1 OD2 REMARK 470 TYR A 41 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ASP A 139 CG OD1 OD2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 40 CG OD1 OD2 REMARK 470 TYR B 41 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL B 42 CG1 CG2 REMARK 470 GLN B 44 CG CD OE1 NE2 REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 140 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 143 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 470 MET B 159 CG SD CE REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 ASP B 237 CG OD1 OD2 REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ARG B 257 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 314 O HOH A 315 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 62.61 36.06 REMARK 500 ASP A 139 -0.20 73.25 REMARK 500 ASP A 237 48.04 -100.22 REMARK 500 ASP B 237 46.65 -83.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 264 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 69 OE1 REMARK 620 2 ASP A 86 OD1 82.6 REMARK 620 3 LEU A 88 O 158.1 89.4 REMARK 620 4 HOH A 313 O 73.1 82.3 85.7 REMARK 620 5 HOH A 314 O 88.2 81.6 110.9 156.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 264 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 69 OE1 REMARK 620 2 ASP B 86 OD1 89.7 REMARK 620 3 LEU B 88 O 176.7 91.7 REMARK 620 4 HOH B 295 O 84.7 95.1 92.3 REMARK 620 5 HOH B 311 O 90.8 104.0 91.8 160.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 272 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LV0 RELATED DB: PDB REMARK 900 NATIVE STRUCTURE REMARK 900 RELATED ID: BAHEA.00759.A RELATED DB: TARGETDB DBREF 3LUZ A 1 263 UNP Q6G1Z6 Q6G1Z6_BARHE 1 263 DBREF 3LUZ B 1 263 UNP Q6G1Z6 Q6G1Z6_BARHE 1 263 SEQADV 3LUZ GLY A -3 UNP Q6G1Z6 EXPRESSION TAG SEQADV 3LUZ PRO A -2 UNP Q6G1Z6 EXPRESSION TAG SEQADV 3LUZ GLY A -1 UNP Q6G1Z6 EXPRESSION TAG SEQADV 3LUZ SER A 0 UNP Q6G1Z6 EXPRESSION TAG SEQADV 3LUZ GLY B -3 UNP Q6G1Z6 EXPRESSION TAG SEQADV 3LUZ PRO B -2 UNP Q6G1Z6 EXPRESSION TAG SEQADV 3LUZ GLY B -1 UNP Q6G1Z6 EXPRESSION TAG SEQADV 3LUZ SER B 0 UNP Q6G1Z6 EXPRESSION TAG SEQRES 1 A 267 GLY PRO GLY SER MET PRO GLN SER ALA VAL MET ASN VAL SEQRES 2 A 267 MET VAL GLN ALA ALA MET LYS ALA GLY ARG SER LEU VAL SEQRES 3 A 267 ARG ASP TYR GLY GLU VAL GLN ASN LEU GLN VAL SER LEU SEQRES 4 A 267 LYS GLY PRO ALA ASP TYR VAL SER GLN ALA ASP ARG LYS SEQRES 5 A 267 ALA GLU LYS ILE ILE PHE ASN GLU LEU SER LYS ALA ARG SEQRES 6 A 267 PRO LYS PHE GLY PHE LEU MET GLU GLU SER GLU GLU ILE SEQRES 7 A 267 ILE GLY GLU ASP SER GLN HIS ARG PHE ILE VAL ASP PRO SEQRES 8 A 267 LEU ASP GLY THR THR ASN PHE LEU HIS GLY ILE PRO PHE SEQRES 9 A 267 PHE ALA VAL SER ILE ALA LEU GLU SER GLN GLY LYS ILE SEQRES 10 A 267 VAL ALA GLY VAL ILE TYR ASN PRO ILE ASN ASP GLU LEU SEQRES 11 A 267 PHE THR ALA GLU ARG GLY SER GLY ALA PHE PHE ASN ASP SEQRES 12 A 267 ARG ARG CYS ARG VAL SER ALA ARG ARG ARG LEU GLU ASP SEQRES 13 A 267 CYS VAL ILE ALA THR GLY MET PRO HIS LEU GLY ARG PRO SEQRES 14 A 267 GLY HIS GLY THR TYR LEU ILE GLU LEU ARG ASN VAL MET SEQRES 15 A 267 ALA GLU VAL SER GLY ILE ARG ARG PHE GLY THR ALA ALA SEQRES 16 A 267 LEU ASP LEU ALA TYR VAL ALA ALA GLY ARG THR ASP GLY SEQRES 17 A 267 PHE TRP GLU ASP ASN LEU GLN ILE TRP ASP MET ALA ALA SEQRES 18 A 267 GLY ILE LEU MET VAL ARG GLU ALA GLY GLY PHE VAL THR SEQRES 19 A 267 ASP LYS GLU GLY GLY ASN ASP ILE PHE ARG LYS LYS ASN SEQRES 20 A 267 ILE ILE ALA GLY ASN GLU HIS ILE ARG ILE LYS LEU GLU SEQRES 21 A 267 ARG ALA LEU LYS LYS GLY ILE SEQRES 1 B 267 GLY PRO GLY SER MET PRO GLN SER ALA VAL MET ASN VAL SEQRES 2 B 267 MET VAL GLN ALA ALA MET LYS ALA GLY ARG SER LEU VAL SEQRES 3 B 267 ARG ASP TYR GLY GLU VAL GLN ASN LEU GLN VAL SER LEU SEQRES 4 B 267 LYS GLY PRO ALA ASP TYR VAL SER GLN ALA ASP ARG LYS SEQRES 5 B 267 ALA GLU LYS ILE ILE PHE ASN GLU LEU SER LYS ALA ARG SEQRES 6 B 267 PRO LYS PHE GLY PHE LEU MET GLU GLU SER GLU GLU ILE SEQRES 7 B 267 ILE GLY GLU ASP SER GLN HIS ARG PHE ILE VAL ASP PRO SEQRES 8 B 267 LEU ASP GLY THR THR ASN PHE LEU HIS GLY ILE PRO PHE SEQRES 9 B 267 PHE ALA VAL SER ILE ALA LEU GLU SER GLN GLY LYS ILE SEQRES 10 B 267 VAL ALA GLY VAL ILE TYR ASN PRO ILE ASN ASP GLU LEU SEQRES 11 B 267 PHE THR ALA GLU ARG GLY SER GLY ALA PHE PHE ASN ASP SEQRES 12 B 267 ARG ARG CYS ARG VAL SER ALA ARG ARG ARG LEU GLU ASP SEQRES 13 B 267 CYS VAL ILE ALA THR GLY MET PRO HIS LEU GLY ARG PRO SEQRES 14 B 267 GLY HIS GLY THR TYR LEU ILE GLU LEU ARG ASN VAL MET SEQRES 15 B 267 ALA GLU VAL SER GLY ILE ARG ARG PHE GLY THR ALA ALA SEQRES 16 B 267 LEU ASP LEU ALA TYR VAL ALA ALA GLY ARG THR ASP GLY SEQRES 17 B 267 PHE TRP GLU ASP ASN LEU GLN ILE TRP ASP MET ALA ALA SEQRES 18 B 267 GLY ILE LEU MET VAL ARG GLU ALA GLY GLY PHE VAL THR SEQRES 19 B 267 ASP LYS GLU GLY GLY ASN ASP ILE PHE ARG LYS LYS ASN SEQRES 20 B 267 ILE ILE ALA GLY ASN GLU HIS ILE ARG ILE LYS LEU GLU SEQRES 21 B 267 ARG ALA LEU LYS LYS GLY ILE HET MG A 264 1 HET IOD A 265 1 HET IOD A 266 1 HET IOD A 267 1 HET IOD A 268 1 HET IOD A 269 1 HET IOD A 270 1 HET IOD A 271 1 HET IOD A 272 1 HET MG B 264 1 HET IOD B 265 1 HET IOD B 266 1 HET IOD B 267 1 HET IOD B 268 1 HET IOD B 269 1 HETNAM MG MAGNESIUM ION HETNAM IOD IODIDE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 IOD 13(I 1-) FORMUL 18 HOH *124(H2 O) HELIX 1 1 SER A 4 GLU A 27 1 24 HELIX 2 2 ASP A 40 ARG A 61 1 22 HELIX 3 3 GLY A 90 GLY A 97 1 8 HELIX 4 4 ARG A 149 ASP A 152 5 4 HELIX 5 5 THR A 169 VAL A 181 1 13 HELIX 6 6 ALA A 190 ALA A 199 1 10 HELIX 7 7 GLN A 211 ALA A 225 1 15 HELIX 8 8 ASP A 237 LYS A 242 1 6 HELIX 9 9 ASN A 248 LYS A 261 1 14 HELIX 10 10 SER B 4 GLY B 26 1 23 HELIX 11 11 ASP B 40 LYS B 59 1 20 HELIX 12 12 GLY B 90 GLY B 97 1 8 HELIX 13 13 ARG B 149 ASP B 152 5 4 HELIX 14 14 TYR B 170 ALA B 179 1 10 HELIX 15 15 THR B 189 ALA B 199 1 11 HELIX 16 16 GLN B 211 ALA B 225 1 15 HELIX 17 17 ASP B 237 LYS B 242 1 6 HELIX 18 18 ASN B 248 LYS B 261 1 14 SHEET 1 A 7 PHE A 64 MET A 68 0 SHEET 2 A 7 ASP A 78 ASP A 89 1 O HIS A 81 N GLY A 65 SHEET 3 A 7 ALA A 102 SER A 109 -1 O GLU A 108 N ARG A 82 SHEET 4 A 7 LYS A 112 ASN A 120 -1 O LYS A 112 N SER A 109 SHEET 5 A 7 GLU A 125 GLU A 130 -1 O PHE A 127 N ILE A 118 SHEET 6 A 7 GLY A 134 PHE A 137 -1 O PHE A 136 N THR A 128 SHEET 7 A 7 ARG A 140 CYS A 142 -1 O ARG A 140 N PHE A 137 SHEET 1 B 5 GLY A 183 ARG A 185 0 SHEET 2 B 5 VAL A 154 THR A 157 1 N ILE A 155 O GLY A 183 SHEET 3 B 5 GLY A 204 GLU A 207 1 O GLY A 204 N ALA A 156 SHEET 4 B 5 ILE A 244 GLY A 247 -1 O ALA A 246 N PHE A 205 SHEET 5 B 5 PHE A 228 THR A 230 -1 N PHE A 228 O GLY A 247 SHEET 1 C 7 GLY B 65 MET B 68 0 SHEET 2 C 7 HIS B 81 ASP B 89 1 O HIS B 81 N GLY B 65 SHEET 3 C 7 ALA B 102 SER B 109 -1 O ALA B 102 N ASP B 89 SHEET 4 C 7 LYS B 112 ASN B 120 -1 O VAL B 117 N ILE B 105 SHEET 5 C 7 GLU B 125 GLU B 130 -1 O PHE B 127 N ILE B 118 SHEET 6 C 7 GLY B 134 PHE B 137 -1 O PHE B 136 N THR B 128 SHEET 7 C 7 ARG B 140 ARG B 141 -1 O ARG B 140 N PHE B 137 SHEET 1 D 5 GLY B 183 ARG B 185 0 SHEET 2 D 5 VAL B 154 THR B 157 1 N ILE B 155 O GLY B 183 SHEET 3 D 5 GLY B 204 GLU B 207 1 O GLY B 204 N ALA B 156 SHEET 4 D 5 ILE B 244 GLY B 247 -1 O ALA B 246 N PHE B 205 SHEET 5 D 5 PHE B 228 THR B 230 -1 N PHE B 228 O GLY B 247 LINK OE1 GLU A 69 MG MG A 264 1555 1555 1.96 LINK OD1 ASP A 86 MG MG A 264 1555 1555 2.19 LINK O LEU A 88 MG MG A 264 1555 1555 2.08 LINK MG MG A 264 O HOH A 313 1555 1555 2.15 LINK MG MG A 264 O HOH A 314 1555 1555 2.64 LINK OE1 GLU B 69 MG MG B 264 1555 1555 2.04 LINK OD1 ASP B 86 MG MG B 264 1555 1555 1.98 LINK O LEU B 88 MG MG B 264 1555 1555 2.02 LINK MG MG B 264 O HOH B 295 1555 1555 2.12 LINK MG MG B 264 O HOH B 311 1555 1555 2.00 SITE 1 AC1 6 GLU A 69 ASP A 86 LEU A 88 THR A 91 SITE 2 AC1 6 HOH A 313 HOH A 314 SITE 1 AC2 5 GLU B 69 ASP B 86 LEU B 88 HOH B 295 SITE 2 AC2 5 HOH B 311 SITE 1 AC3 1 PHE B 64 SITE 1 AC4 1 LYS B 63 SITE 1 AC5 4 ARG A 131 ARG A 223 IOD A 272 HOH A 338 SITE 1 AC6 1 ALA A 146 SITE 1 AC7 1 MET A 178 SITE 1 AC8 2 THR B 128 GLU B 130 SITE 1 AC9 1 ARG A 186 SITE 1 BC1 3 ARG A 131 ARG B 223 VAL B 229 SITE 1 BC2 3 ILE A 113 ARG A 131 IOD A 267 CRYST1 48.540 81.280 58.760 90.00 98.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020602 0.000000 0.003183 0.00000 SCALE2 0.000000 0.012303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017220 0.00000