HEADER MEMBRANE PROTEIN 19-FEB-10 3LV9 TITLE CRYSTAL STRUCTURE OF CBS DOMAIN OF A PUTATIVE TRANSPORTER FROM TITLE 2 CLOSTRIDIUM DIFFICILE 630 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE 630; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL23-DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS CBS DOMAIN, PSI, MCSG, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, CELL MEMBRANE, KEYWDS 3 MEMBRANE, TRANSMEMBRANE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,C.TESAR,G.COBB,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 08-NOV-17 3LV9 1 REMARK REVDAT 2 13-JUL-11 3LV9 1 VERSN REVDAT 1 09-MAR-10 3LV9 0 JRNL AUTH B.NOCEK,C.TESAR,G.COBB,A.JOACHIMIAK,MCSG JRNL TITL CRYSTAL STRUCTURE OF CBS DOMAIN OF A PUTATIVE TRANSPORTER JRNL TITL 2 FROM CLOSTRIDIUM DIFFICILE 630 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 5641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 271 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.1630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 68.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.91000 REMARK 3 B12 (A**2) : -0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.440 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.280 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.364 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1073 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 732 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1451 ; 1.638 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1795 ; 0.958 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 133 ; 6.243 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;31.053 ;24.808 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 211 ;17.721 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;24.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1174 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 203 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 654 ; 0.760 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 266 ; 0.158 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1067 ; 1.521 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 419 ; 2.456 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 383 ; 4.099 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4083 25.5280 17.5677 REMARK 3 T TENSOR REMARK 3 T11: 0.9796 T22: 0.0411 REMARK 3 T33: 0.3731 T12: -0.0951 REMARK 3 T13: -0.0797 T23: -0.0925 REMARK 3 L TENSOR REMARK 3 L11: 15.0256 L22: -0.2825 REMARK 3 L33: 23.9723 L12: 3.7797 REMARK 3 L13: 8.6241 L23: -3.4302 REMARK 3 S TENSOR REMARK 3 S11: -0.1438 S12: 0.1510 S13: 1.6426 REMARK 3 S21: 0.6917 S22: -0.1572 S23: 0.2916 REMARK 3 S31: -0.6003 S32: 0.1059 S33: 0.3010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4143 11.4414 7.9966 REMARK 3 T TENSOR REMARK 3 T11: 0.2672 T22: 0.1797 REMARK 3 T33: 0.1990 T12: 0.0021 REMARK 3 T13: -0.0042 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.4412 L22: 2.4174 REMARK 3 L33: 1.1211 L12: 1.0360 REMARK 3 L13: -0.5482 L23: 0.2222 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: -0.0025 S13: 0.0772 REMARK 3 S21: 0.0210 S22: -0.0023 S23: -0.0209 REMARK 3 S31: -0.0517 S32: 0.1687 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8967 -9.1610 4.6204 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.1842 REMARK 3 T33: 0.1788 T12: -0.0217 REMARK 3 T13: 0.0263 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.9029 L22: 4.9273 REMARK 3 L33: 5.2309 L12: 1.8770 REMARK 3 L13: -0.7884 L23: 0.3372 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.0819 S13: -0.0473 REMARK 3 S21: -0.0600 S22: 0.0182 S23: -0.0590 REMARK 3 S31: 0.1221 S32: 0.1069 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0929 -4.5939 14.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.2768 T22: 0.1957 REMARK 3 T33: 0.1882 T12: -0.0909 REMARK 3 T13: -0.0285 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 10.6110 L22: 11.8643 REMARK 3 L33: 6.7402 L12: -7.6873 REMARK 3 L13: 1.7184 L23: 1.3860 REMARK 3 S TENSOR REMARK 3 S11: -0.1924 S12: -0.4169 S13: 0.7633 REMARK 3 S21: 0.7242 S22: 0.4652 S23: -0.8327 REMARK 3 S31: 0.0109 S32: 0.5577 S33: -0.2728 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0661 -0.5807 3.4532 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.2071 REMARK 3 T33: 0.2255 T12: -0.0008 REMARK 3 T13: 0.0166 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.0202 L22: 4.6307 REMARK 3 L33: 3.5001 L12: 0.5819 REMARK 3 L13: 0.3228 L23: -1.1624 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0257 S13: 0.0248 REMARK 3 S21: 0.0728 S22: 0.0255 S23: 0.2017 REMARK 3 S31: -0.0918 S32: -0.0366 S33: -0.0267 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2920 -12.6972 14.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.2840 T22: 0.2535 REMARK 3 T33: 0.1293 T12: 0.0018 REMARK 3 T13: 0.0468 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 4.1633 L22: 8.7668 REMARK 3 L33: 9.0727 L12: -1.4969 REMARK 3 L13: 3.4132 L23: 4.6343 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.2966 S13: 0.1521 REMARK 3 S21: 0.7023 S22: 0.0660 S23: 0.0610 REMARK 3 S31: 0.0673 S32: -0.3196 S33: -0.0708 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1727 -9.9825 7.1188 REMARK 3 T TENSOR REMARK 3 T11: 0.2408 T22: 0.1647 REMARK 3 T33: 0.3075 T12: -0.0077 REMARK 3 T13: 0.0525 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.6806 L22: 13.1266 REMARK 3 L33: 0.6883 L12: -0.4416 REMARK 3 L13: 0.9306 L23: -2.1878 REMARK 3 S TENSOR REMARK 3 S11: 0.2217 S12: 0.0099 S13: 0.0687 REMARK 3 S21: -0.3397 S22: -0.0089 S23: 0.6159 REMARK 3 S31: 0.1429 S32: 0.0232 S33: -0.2128 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5879 16.9223 9.7222 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.1298 REMARK 3 T33: 0.2412 T12: 0.0481 REMARK 3 T13: 0.0270 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 3.4053 L22: 2.1050 REMARK 3 L33: 4.0548 L12: -1.3530 REMARK 3 L13: -0.4578 L23: 2.2245 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0223 S13: 0.1795 REMARK 3 S21: 0.0997 S22: 0.1218 S23: -0.0129 REMARK 3 S31: -0.2584 S32: -0.1259 S33: -0.1122 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2040 11.7304 12.9697 REMARK 3 T TENSOR REMARK 3 T11: 0.4211 T22: 0.3640 REMARK 3 T33: 0.2183 T12: 0.0213 REMARK 3 T13: 0.0781 T23: 0.0659 REMARK 3 L TENSOR REMARK 3 L11: 4.3137 L22: 9.7807 REMARK 3 L33: -4.2703 L12: 5.6523 REMARK 3 L13: 1.1056 L23: 2.8104 REMARK 3 S TENSOR REMARK 3 S11: -0.5724 S12: 0.6517 S13: 0.2855 REMARK 3 S21: 0.1245 S22: 0.4504 S23: 0.6072 REMARK 3 S31: 0.3164 S32: -0.0040 S33: 0.1220 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0006 11.3740 5.9267 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.1883 REMARK 3 T33: 0.2206 T12: 0.0018 REMARK 3 T13: -0.0139 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.9404 L22: 1.2900 REMARK 3 L33: 9.1371 L12: -0.5337 REMARK 3 L13: -2.7601 L23: 0.2686 REMARK 3 S TENSOR REMARK 3 S11: 0.1831 S12: -0.0166 S13: 0.1008 REMARK 3 S21: 0.0736 S22: 0.0394 S23: 0.1496 REMARK 3 S31: -0.2492 S32: 0.0228 S33: -0.2225 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9125 16.0916 22.5002 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.2329 REMARK 3 T33: 0.2461 T12: 0.0208 REMARK 3 T13: 0.0613 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 4.0972 L22: 5.8401 REMARK 3 L33: 6.0729 L12: -4.6602 REMARK 3 L13: -1.0387 L23: 3.5093 REMARK 3 S TENSOR REMARK 3 S11: -0.2790 S12: -0.2354 S13: 0.1820 REMARK 3 S21: 0.1099 S22: 0.4260 S23: -0.4531 REMARK 3 S31: -0.0840 S32: 0.6267 S33: -0.1469 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE 0.1M NA/K REMARK 280 PHOSPHATE 50% PEG200, PH 6.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.17533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.58767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.58767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.17533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS LIKELY MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.58767 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 GLN A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 ASN A 13 REMARK 465 ILE A 14 REMARK 465 GLN A 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 59 CB CYS A 59 SG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 -60.13 74.94 REMARK 500 ASP A 65 76.77 -112.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62621.1 RELATED DB: TARGETDB DBREF 3LV9 A 1 145 UNP Q183U2 Q183U2_CLOD6 196 340 SEQADV 3LV9 SER A -2 UNP Q183U2 EXPRESSION TAG SEQADV 3LV9 ASN A -1 UNP Q183U2 EXPRESSION TAG SEQADV 3LV9 ALA A 0 UNP Q183U2 EXPRESSION TAG SEQRES 1 A 148 SER ASN ALA GLY LEU ILE ASP GLU SER GLU GLN ARG LEU SEQRES 2 A 148 VAL ASP ASN ILE PHE GLU PHE GLU GLU LYS LYS ILE ARG SEQRES 3 A 148 GLU ILE MSE VAL PRO ARG THR ASP MSE VAL CYS ILE TYR SEQRES 4 A 148 GLU SER ASP SER GLU GLU LYS ILE LEU ALA ILE LEU LYS SEQRES 5 A 148 GLU GLU GLY VAL THR ARG TYR PRO VAL CYS ARG LYS ASN SEQRES 6 A 148 LYS ASP ASP ILE LEU GLY PHE VAL HIS ILE ARG ASP LEU SEQRES 7 A 148 TYR ASN GLN LYS ILE ASN GLU ASN LYS ILE GLU LEU GLU SEQRES 8 A 148 GLU ILE LEU ARG ASP ILE ILE TYR ILE SER GLU ASN LEU SEQRES 9 A 148 THR ILE ASP LYS ALA LEU GLU ARG ILE ARG LYS GLU LYS SEQRES 10 A 148 LEU GLN LEU ALA ILE VAL VAL ASP GLU TYR GLY GLY THR SEQRES 11 A 148 SER GLY VAL VAL THR ILE GLU ASP ILE LEU GLU GLU ILE SEQRES 12 A 148 VAL GLY GLU ILE GLN MODRES 3LV9 MSE A 26 MET SELENOMETHIONINE MODRES 3LV9 MSE A 32 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 32 8 HET PO4 A 401 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *13(H2 O) HELIX 1 1 PHE A 15 GLU A 19 5 5 HELIX 2 2 LYS A 21 ILE A 25 5 5 HELIX 3 3 SER A 40 GLU A 51 1 12 HELIX 4 4 ILE A 72 ASN A 83 1 12 HELIX 5 5 GLU A 86 ILE A 90 5 5 HELIX 6 6 THR A 102 LYS A 114 1 13 HELIX 7 7 ILE A 133 GLU A 143 1 11 SHEET 1 A 4 VAL A 27 PRO A 28 0 SHEET 2 A 4 THR A 127 THR A 132 -1 O VAL A 130 N VAL A 27 SHEET 3 A 4 LEU A 117 VAL A 121 -1 N ALA A 118 O VAL A 131 SHEET 4 A 4 ILE A 95 SER A 98 1 N ILE A 97 O VAL A 121 SHEET 1 B 3 ILE A 35 TYR A 36 0 SHEET 2 B 3 ARG A 55 CYS A 59 1 O PRO A 57 N ILE A 35 SHEET 3 B 3 ILE A 66 HIS A 71 -1 O VAL A 70 N TYR A 56 SSBOND 1 CYS A 34 CYS A 59 1555 1555 1.65 LINK C ILE A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N VAL A 27 1555 1555 1.32 LINK C ASP A 31 N MSE A 32 1555 1555 1.32 LINK C MSE A 32 N VAL A 33 1555 1555 1.31 SITE 1 AC1 3 TYR A 36 LYS A 63 LYS A 84 CRYST1 43.641 43.641 127.763 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022914 0.013230 0.000000 0.00000 SCALE2 0.000000 0.026459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007827 0.00000