HEADER TRANSFERASE 22-FEB-10 3LVS TITLE CRYSTAL STRUCTURE OF FARNESYL DIPHOSPHATE SYNTHASE FROM RHODOBACTER TITLE 2 CAPSULATUS SB1003 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 STRAIN: ATCC BAA-309D; SOURCE 5 GENE: TRANS_IPPS_HT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOPRENYL DIPHOSPHATE SYNTHASE, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NYSGRC, NEW YORK STRUCTURAL GENOMIX RESEARCH KEYWDS 3 CONSORTIUM, NYSGXRC, TRANSFERASE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,M.RUTTER,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK AUTHOR 2 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 3LVS 1 REMARK REVDAT 6 10-FEB-21 3LVS 1 AUTHOR REMARK REVDAT 5 21-NOV-18 3LVS 1 AUTHOR DBREF REVDAT 4 10-APR-13 3LVS 1 JRNL REVDAT 3 03-APR-13 3LVS 1 JRNL REVDAT 2 27-MAR-13 3LVS 1 JRNL VERSN REVDAT 1 09-MAR-10 3LVS 0 JRNL AUTH F.H.WALLRAPP,J.J.PAN,G.RAMAMOORTHY,D.E.ALMONACID, JRNL AUTH 2 B.S.HILLERICH,R.SEIDEL,Y.PATSKOVSKY,P.C.BABBITT,S.C.ALMO, JRNL AUTH 3 M.P.JACOBSON,C.D.POULTER JRNL TITL PREDICTION OF FUNCTION FOR THE POLYPRENYL TRANSFERASE JRNL TITL 2 SUBGROUP IN THE ISOPRENOID SYNTHASE SUPERFAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E1196 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23493556 JRNL DOI 10.1073/PNAS.1300632110 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1112 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.61000 REMARK 3 B22 (A**2) : -3.36000 REMARK 3 B33 (A**2) : -3.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.113 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4027 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5474 ; 1.232 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 4.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;32.021 ;24.241 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 626 ;19.232 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;14.723 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 652 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3014 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2704 ; 3.257 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4234 ; 4.664 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1323 ; 6.389 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1236 ; 8.801 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA ANISOTROPIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 50MM POTASSIUM DIHYDROGEN REMARK 280 PHOSPHATE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.22800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.38300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.73200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.38300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.22800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.73200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 222 REMARK 465 ASN A 223 REMARK 465 GLU A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 GLY A 228 REMARK 465 LYS A 229 REMARK 465 ARG A 230 REMARK 465 LEU A 231 REMARK 465 GLY A 232 REMARK 465 LYS A 233 REMARK 465 ASP A 234 REMARK 465 ALA A 235 REMARK 465 GLU A 236 REMARK 465 ALA A 237 REMARK 465 HIS A 238 REMARK 465 LYS A 239 REMARK 465 LYS A 288 REMARK 465 GLU A 289 REMARK 465 GLY A 290 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 MET B -1 REMARK 465 GLY B 222 REMARK 465 ASN B 223 REMARK 465 GLU B 224 REMARK 465 GLU B 225 REMARK 465 ALA B 226 REMARK 465 ALA B 227 REMARK 465 GLY B 228 REMARK 465 LYS B 229 REMARK 465 ARG B 230 REMARK 465 LEU B 231 REMARK 465 GLY B 232 REMARK 465 LYS B 233 REMARK 465 ARG B 286 REMARK 465 ASP B 287 REMARK 465 LYS B 288 REMARK 465 GLU B 289 REMARK 465 GLY B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 163 CG1 CG2 REMARK 470 VAL B 163 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 85 -116.40 -112.74 REMARK 500 TRP A 101 -114.28 -109.27 REMARK 500 MET B 85 -113.31 -115.61 REMARK 500 ASN B 87 65.72 60.37 REMARK 500 TRP B 101 -104.89 -111.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-20032C RELATED DB: TARGETDB DBREF 3LVS A -1 296 PDB 3LVS 3LVS -1 296 DBREF 3LVS B -1 296 PDB 3LVS 3LVS -1 296 SEQRES 1 A 298 MET SER LEU PHE SER GLU ARG LEU LYS GLU ILE GLN ASP SEQRES 2 A 298 ALA VAL GLU THR ALA MET ALA ALA ALA ILE GLY ARG LEU SEQRES 3 A 298 PRO ALA GLY ASP LEU ARG ASP ALA MET ALA TYR ALA ALA SEQRES 4 A 298 GLN GLY GLY LYS ARG LEU ARG ALA PHE LEU ALA ILE GLU SEQRES 5 A 298 SER ALA ALA ILE HIS GLY ILE SER MET ALA GLN ALA MET SEQRES 6 A 298 PRO ALA ALA LEU ALA VAL GLU ALA LEU HIS ALA TYR SER SEQRES 7 A 298 LEU VAL HIS ASP ASP MET PRO CYS MET ASP ASN ASP ASP SEQRES 8 A 298 LEU ARG ARG GLY LEU PRO THR VAL HIS LYS LYS TRP ASP SEQRES 9 A 298 ASP ALA THR ALA VAL LEU ALA GLY ASP ALA LEU GLN THR SEQRES 10 A 298 LEU ALA PHE GLU LEU CYS THR ASP PRO VAL LEU GLY SER SEQRES 11 A 298 ALA GLU ASN ARG VAL ALA LEU VAL ALA ALA LEU ALA GLN SEQRES 12 A 298 ALA SER GLY ALA GLU GLY MET VAL TYR GLY GLN ALA LEU SEQRES 13 A 298 ASP ILE ALA ALA GLU THR ALA ALA VAL PRO LEU THR LEU SEQRES 14 A 298 ASP GLU ILE ILE ARG LEU GLN ALA GLY LYS THR GLY ALA SEQRES 15 A 298 LEU ILE SER PHE ALA ALA GLN ALA GLY ALA ILE LEU ALA SEQRES 16 A 298 GLY ALA ASP ARG GLY PRO LEU THR ALA TYR ALA THR ALA SEQRES 17 A 298 LEU GLY LEU ALA PHE GLN ILE ALA ASP ASP ILE LEU ASP SEQRES 18 A 298 VAL GLU GLY ASN GLU GLU ALA ALA GLY LYS ARG LEU GLY SEQRES 19 A 298 LYS ASP ALA GLU ALA HIS LYS ALA THR PHE VAL SER LEU SEQRES 20 A 298 LEU GLY LEU ALA GLY ALA LYS SER ARG ALA ALA ASP LEU SEQRES 21 A 298 VAL ALA GLU ALA GLU ALA ALA LEU ALA PRO TYR GLY GLU SEQRES 22 A 298 ALA ALA SER THR LEU ARG ALA CYS ALA ARG TYR VAL ILE SEQRES 23 A 298 GLU ARG ASP LYS GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 298 MET SER LEU PHE SER GLU ARG LEU LYS GLU ILE GLN ASP SEQRES 2 B 298 ALA VAL GLU THR ALA MET ALA ALA ALA ILE GLY ARG LEU SEQRES 3 B 298 PRO ALA GLY ASP LEU ARG ASP ALA MET ALA TYR ALA ALA SEQRES 4 B 298 GLN GLY GLY LYS ARG LEU ARG ALA PHE LEU ALA ILE GLU SEQRES 5 B 298 SER ALA ALA ILE HIS GLY ILE SER MET ALA GLN ALA MET SEQRES 6 B 298 PRO ALA ALA LEU ALA VAL GLU ALA LEU HIS ALA TYR SER SEQRES 7 B 298 LEU VAL HIS ASP ASP MET PRO CYS MET ASP ASN ASP ASP SEQRES 8 B 298 LEU ARG ARG GLY LEU PRO THR VAL HIS LYS LYS TRP ASP SEQRES 9 B 298 ASP ALA THR ALA VAL LEU ALA GLY ASP ALA LEU GLN THR SEQRES 10 B 298 LEU ALA PHE GLU LEU CYS THR ASP PRO VAL LEU GLY SER SEQRES 11 B 298 ALA GLU ASN ARG VAL ALA LEU VAL ALA ALA LEU ALA GLN SEQRES 12 B 298 ALA SER GLY ALA GLU GLY MET VAL TYR GLY GLN ALA LEU SEQRES 13 B 298 ASP ILE ALA ALA GLU THR ALA ALA VAL PRO LEU THR LEU SEQRES 14 B 298 ASP GLU ILE ILE ARG LEU GLN ALA GLY LYS THR GLY ALA SEQRES 15 B 298 LEU ILE SER PHE ALA ALA GLN ALA GLY ALA ILE LEU ALA SEQRES 16 B 298 GLY ALA ASP ARG GLY PRO LEU THR ALA TYR ALA THR ALA SEQRES 17 B 298 LEU GLY LEU ALA PHE GLN ILE ALA ASP ASP ILE LEU ASP SEQRES 18 B 298 VAL GLU GLY ASN GLU GLU ALA ALA GLY LYS ARG LEU GLY SEQRES 19 B 298 LYS ASP ALA GLU ALA HIS LYS ALA THR PHE VAL SER LEU SEQRES 20 B 298 LEU GLY LEU ALA GLY ALA LYS SER ARG ALA ALA ASP LEU SEQRES 21 B 298 VAL ALA GLU ALA GLU ALA ALA LEU ALA PRO TYR GLY GLU SEQRES 22 B 298 ALA ALA SER THR LEU ARG ALA CYS ALA ARG TYR VAL ILE SEQRES 23 B 298 GLU ARG ASP LYS GLU GLY HIS HIS HIS HIS HIS HIS HET PO4 A 297 5 HET GOL A 298 6 HET PO4 B 297 5 HET PO4 B 298 5 HET PO4 B 299 5 HET GOL B 300 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 4(O4 P 3-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 9 HOH *125(H2 O) HELIX 1 1 SER A 0 ARG A 23 1 24 HELIX 2 2 GLY A 27 ALA A 37 1 11 HELIX 3 3 ARG A 42 ILE A 54 1 13 HELIX 4 4 SER A 58 ASP A 81 1 24 HELIX 5 5 THR A 96 TRP A 101 1 6 HELIX 6 6 ASP A 102 CYS A 121 1 20 HELIX 7 7 THR A 122 GLY A 127 5 6 HELIX 8 8 SER A 128 GLY A 144 1 17 HELIX 9 9 GLY A 147 GLU A 159 1 13 HELIX 10 10 ASP A 168 THR A 178 1 11 HELIX 11 11 THR A 178 LEU A 192 1 15 HELIX 12 12 ARG A 197 VAL A 220 1 24 HELIX 13 13 THR A 241 LEU A 266 1 26 HELIX 14 14 ALA A 267 ALA A 272 5 6 HELIX 15 15 ALA A 273 ARG A 286 1 14 HELIX 16 16 SER B 0 ARG B 23 1 24 HELIX 17 17 GLY B 27 ALA B 37 1 11 HELIX 18 18 ARG B 42 ILE B 54 1 13 HELIX 19 19 SER B 58 ASP B 81 1 24 HELIX 20 20 THR B 96 TRP B 101 1 6 HELIX 21 21 ASP B 102 CYS B 121 1 20 HELIX 22 22 THR B 122 GLY B 127 5 6 HELIX 23 23 SER B 128 GLY B 144 1 17 HELIX 24 24 GLY B 147 GLU B 159 1 13 HELIX 25 25 THR B 166 THR B 178 1 13 HELIX 26 26 THR B 178 GLY B 194 1 17 HELIX 27 27 ARG B 197 GLU B 221 1 25 HELIX 28 28 THR B 241 GLY B 247 1 7 HELIX 29 29 GLY B 247 LEU B 266 1 20 HELIX 30 30 ALA B 267 ALA B 272 5 6 HELIX 31 31 ALA B 273 GLU B 285 1 13 SHEET 1 A 2 LEU B 90 ARG B 91 0 SHEET 2 A 2 LEU B 94 PRO B 95 -1 O LEU B 94 N ARG B 91 SITE 1 AC1 7 GLY A 40 LYS A 41 ARG A 44 HIS A 73 SITE 2 AC1 7 HOH A 307 HOH A 348 HOH A 349 SITE 1 AC2 7 ALA A 138 GLN A 141 ALA A 142 ALA A 180 SITE 2 AC2 7 GLN A 187 ARG A 197 HOH A 354 SITE 1 AC3 8 GLY B 40 LYS B 41 HIS B 73 ARG B 92 SITE 2 AC3 8 HOH B 310 HOH B 313 HOH B 333 HOH B 360 SITE 1 AC4 6 ALA A 153 LEU A 154 ALA A 157 GLY B 27 SITE 2 AC4 6 ASP B 28 LEU B 29 SITE 1 AC5 6 GLU A 271 SER A 274 HOH A 351 LEU B 248 SITE 2 AC5 6 ALA B 249 HOH B 369 SITE 1 AC6 5 ALA B 138 GLN B 141 ALA B 180 SER B 183 SITE 2 AC6 5 GLN B 187 CRYST1 54.456 89.464 132.766 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018363 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007532 0.00000