data_3LWJ # _entry.id 3LWJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LWJ pdb_00003lwj 10.2210/pdb3lwj/pdb RCSB RCSB057818 ? ? WWPDB D_1000057818 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 399241 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3LWJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-02-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of Putative TetR-family transcriptional regulator (YP_752756.1) from Syntrophomonas wolfei str. Goettingen at 2.07 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3LWJ _cell.length_a 68.184 _cell.length_b 68.184 _cell.length_c 75.710 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LWJ _symmetry.Int_Tables_number 154 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative TetR-family transcriptional regulator' 23633.717 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 water nat water 18.015 65 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)PIPLEKQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSIS EYYLVEKDLYERFIETKRLT(MSE)EVFAQNETLSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFKNVP VSPIAHSILAIEKFSLYKWVVLKAITKEE(MSE)IE(MSE)VLSFHKTLAVGLLVVND ; _entity_poly.pdbx_seq_one_letter_code_can ;GMPIPLEKQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYL VEKDLYERFIETKRLTMEVFAQNETLSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFKNVPVSPIAHSI LAIEKFSLYKWVVLKAITKEEMIEMVLSFHKTLAVGLLVVND ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 399241 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 PRO n 1 4 ILE n 1 5 PRO n 1 6 LEU n 1 7 GLU n 1 8 LYS n 1 9 GLN n 1 10 ASN n 1 11 LYS n 1 12 GLU n 1 13 ARG n 1 14 ARG n 1 15 GLN n 1 16 LYS n 1 17 ILE n 1 18 LEU n 1 19 THR n 1 20 CYS n 1 21 SER n 1 22 LEU n 1 23 ASP n 1 24 LEU n 1 25 PHE n 1 26 ILE n 1 27 GLU n 1 28 LYS n 1 29 GLY n 1 30 TYR n 1 31 TYR n 1 32 ASN n 1 33 THR n 1 34 SER n 1 35 ILE n 1 36 ARG n 1 37 ASP n 1 38 ILE n 1 39 ILE n 1 40 ALA n 1 41 LEU n 1 42 SER n 1 43 GLU n 1 44 VAL n 1 45 GLY n 1 46 THR n 1 47 GLY n 1 48 THR n 1 49 PHE n 1 50 TYR n 1 51 ASN n 1 52 TYR n 1 53 PHE n 1 54 VAL n 1 55 ASP n 1 56 LYS n 1 57 GLU n 1 58 ASP n 1 59 ILE n 1 60 LEU n 1 61 LYS n 1 62 ASN n 1 63 LEU n 1 64 LEU n 1 65 GLU n 1 66 ASP n 1 67 PHE n 1 68 ALA n 1 69 LYS n 1 70 GLN n 1 71 ILE n 1 72 ILE n 1 73 SER n 1 74 SER n 1 75 ILE n 1 76 SER n 1 77 GLU n 1 78 TYR n 1 79 TYR n 1 80 LEU n 1 81 VAL n 1 82 GLU n 1 83 LYS n 1 84 ASP n 1 85 LEU n 1 86 TYR n 1 87 GLU n 1 88 ARG n 1 89 PHE n 1 90 ILE n 1 91 GLU n 1 92 THR n 1 93 LYS n 1 94 ARG n 1 95 LEU n 1 96 THR n 1 97 MSE n 1 98 GLU n 1 99 VAL n 1 100 PHE n 1 101 ALA n 1 102 GLN n 1 103 ASN n 1 104 GLU n 1 105 THR n 1 106 LEU n 1 107 SER n 1 108 GLU n 1 109 ILE n 1 110 TYR n 1 111 SER n 1 112 ARG n 1 113 VAL n 1 114 ALA n 1 115 GLY n 1 116 SER n 1 117 SER n 1 118 ALA n 1 119 PRO n 1 120 ILE n 1 121 ASP n 1 122 GLN n 1 123 CYS n 1 124 LEU n 1 125 LYS n 1 126 GLN n 1 127 PHE n 1 128 GLU n 1 129 ASP n 1 130 ARG n 1 131 LEU n 1 132 LEU n 1 133 GLU n 1 134 PHE n 1 135 TYR n 1 136 SER n 1 137 ARG n 1 138 ASN n 1 139 ILE n 1 140 GLU n 1 141 TYR n 1 142 GLY n 1 143 ILE n 1 144 LYS n 1 145 LYS n 1 146 GLY n 1 147 VAL n 1 148 PHE n 1 149 LYS n 1 150 ASN n 1 151 VAL n 1 152 PRO n 1 153 VAL n 1 154 SER n 1 155 PRO n 1 156 ILE n 1 157 ALA n 1 158 HIS n 1 159 SER n 1 160 ILE n 1 161 LEU n 1 162 ALA n 1 163 ILE n 1 164 GLU n 1 165 LYS n 1 166 PHE n 1 167 SER n 1 168 LEU n 1 169 TYR n 1 170 LYS n 1 171 TRP n 1 172 VAL n 1 173 VAL n 1 174 LEU n 1 175 LYS n 1 176 ALA n 1 177 ILE n 1 178 THR n 1 179 LYS n 1 180 GLU n 1 181 GLU n 1 182 MSE n 1 183 ILE n 1 184 GLU n 1 185 MSE n 1 186 VAL n 1 187 LEU n 1 188 SER n 1 189 PHE n 1 190 HIS n 1 191 LYS n 1 192 THR n 1 193 LEU n 1 194 ALA n 1 195 VAL n 1 196 GLY n 1 197 LEU n 1 198 LEU n 1 199 VAL n 1 200 VAL n 1 201 ASN n 1 202 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Swol_0026 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Goettingen _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Syntrophomonas wolfei subsp. wolfei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 335541 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0B0W9_SYNWW _struct_ref.pdbx_db_accession Q0B0W9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPIPLEKQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYLV EKDLYERFIETKRLTMEVFAQNETLSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFKNVPVSPIAHSIL AIEKFSLYKWVVLKAITKEEMIEMVLSFHKTLAVGLLVVND ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LWJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 202 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q0B0W9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 201 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 201 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3LWJ _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q0B0W9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3LWJ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.3 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '25.0000% Ethylene-Glycol, No Buffer pH 4.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2010-01-25 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97898 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength 0.97898 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3LWJ _reflns.d_resolution_high 2.07 _reflns.number_obs 12714 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_netI_over_sigmaI 17.450 _reflns.percent_possible_obs 99.000 _reflns.B_iso_Wilson_estimate 42.439 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 59.05 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.07 2.14 9698 ? 1150 0.013 2.3 ? ? ? ? ? 96.30 1 1 2.14 2.23 11906 ? 1320 0.013 4.0 ? ? ? ? ? 99.90 2 1 2.23 2.33 9309 ? 1196 0.013 5.2 ? ? ? ? ? 96.20 3 1 2.33 2.45 11323 ? 1237 0.013 7.3 ? ? ? ? ? 100.00 4 1 2.45 2.61 12099 ? 1328 0.013 10.1 ? ? ? ? ? 100.00 5 1 2.61 2.81 12527 ? 1251 0.013 13.6 ? ? ? ? ? 99.20 6 1 2.81 3.09 15601 ? 1265 0.013 20.6 ? ? ? ? ? 100.00 7 1 3.09 3.53 17059 ? 1267 0.013 27.7 ? ? ? ? ? 99.50 8 1 3.53 4.44 15938 ? 1287 0.013 36.3 ? ? ? ? ? 98.50 9 1 4.44 59.05 18428 ? 1400 0.013 43.0 ? ? ? ? ? 99.60 10 1 # _refine.entry_id 3LWJ _refine.ls_d_res_high 2.070 _refine.ls_d_res_low 59.050 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.240 _refine.ls_number_reflns_obs 12714 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_R_work 0.188 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.234 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 620 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.327 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.350 _refine.aniso_B[2][2] 0.350 _refine.aniso_B[3][3] -0.530 _refine.aniso_B[1][2] 0.180 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.221 _refine.pdbx_overall_ESU_R_Free 0.184 _refine.overall_SU_ML 0.143 _refine.overall_SU_B 12.122 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 65.79 _refine.B_iso_min 8.41 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1562 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 1631 _refine_hist.d_res_high 2.070 _refine_hist.d_res_low 59.050 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1647 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1127 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2236 1.434 1.975 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2771 0.928 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 210 4.741 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 74 38.894 24.459 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 315 14.091 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 8 21.194 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 262 0.078 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1801 0.006 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 338 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 987 1.806 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 398 0.518 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1616 2.946 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 660 5.179 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 611 7.134 11.000 ? ? # _refine_ls_shell.d_res_high 2.070 _refine_ls_shell.d_res_low 2.124 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.440 _refine_ls_shell.number_reflns_R_work 869 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.328 _refine_ls_shell.R_factor_R_free 0.372 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 912 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LWJ _struct.title ;Crystal structure of Putative TetR-family transcriptional regulator (YP_752756.1) from Syntrophomonas wolfei str. Goettingen at 2.07 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative TetR-family transcriptional regulator, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, DNA-binding, Transcription, Transcription regulation, Bacterial regulatory proteins, tetR family, Transcription regulator ; _struct_keywords.pdbx_keywords 'Transcription regulator' _struct_keywords.entry_id 3LWJ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 9 ? GLY A 29 ? GLN A 8 GLY A 28 1 ? 21 HELX_P HELX_P2 2 SER A 34 ? GLU A 43 ? SER A 33 GLU A 42 1 ? 10 HELX_P HELX_P3 3 GLY A 45 ? PHE A 53 ? GLY A 44 PHE A 52 1 ? 9 HELX_P HELX_P4 4 ASP A 55 ? LEU A 80 ? ASP A 54 LEU A 79 1 ? 26 HELX_P HELX_P5 5 ASP A 84 ? ASN A 103 ? ASP A 83 ASN A 102 1 ? 20 HELX_P HELX_P6 6 ASN A 103 ? ALA A 114 ? ASN A 102 ALA A 113 1 ? 12 HELX_P HELX_P7 7 SER A 117 ? LYS A 145 ? SER A 116 LYS A 144 1 ? 29 HELX_P HELX_P8 8 PRO A 152 ? VAL A 173 ? PRO A 151 VAL A 172 1 ? 22 HELX_P HELX_P9 9 THR A 178 ? GLY A 196 ? THR A 177 GLY A 195 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 96 C ? ? ? 1_555 A MSE 97 N ? ? A THR 95 A MSE 96 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 97 C ? ? ? 1_555 A GLU 98 N ? ? A MSE 96 A GLU 97 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A GLU 181 C ? ? ? 1_555 A MSE 182 N ? ? A GLU 180 A MSE 181 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 182 C ? ? ? 1_555 A ILE 183 N ? ? A MSE 181 A ILE 182 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A GLU 184 C ? ? ? 1_555 A MSE 185 N ? ? A GLU 183 A MSE 184 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A MSE 185 C ? ? ? 1_555 A VAL 186 N ? ? A MSE 184 A VAL 185 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id EDO _struct_site.pdbx_auth_seq_id 202 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE EDO A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TYR A 79 ? TYR A 78 . ? 1_555 ? 2 AC1 7 PHE A 89 ? PHE A 88 . ? 1_555 ? 3 AC1 7 LYS A 93 ? LYS A 92 . ? 1_555 ? 4 AC1 7 TYR A 135 ? TYR A 134 . ? 1_555 ? 5 AC1 7 ASN A 138 ? ASN A 137 . ? 1_555 ? 6 AC1 7 ILE A 160 ? ILE A 159 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 230 . ? 1_555 ? # _atom_sites.entry_id 3LWJ _atom_sites.fract_transf_matrix[1][1] 0.014666 _atom_sites.fract_transf_matrix[1][2] 0.008468 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016935 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013208 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 PRO 3 2 ? ? ? A . n A 1 4 ILE 4 3 ? ? ? A . n A 1 5 PRO 5 4 ? ? ? A . n A 1 6 LEU 6 5 ? ? ? A . n A 1 7 GLU 7 6 ? ? ? A . n A 1 8 LYS 8 7 ? ? ? A . n A 1 9 GLN 9 8 8 GLN GLN A . n A 1 10 ASN 10 9 9 ASN ASN A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 GLN 15 14 14 GLN GLN A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 ILE 17 16 16 ILE ILE A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 CYS 20 19 19 CYS CYS A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 ASP 23 22 22 ASP ASP A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 TYR 30 29 29 TYR TYR A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 ASN 32 31 31 ASN ASN A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 ILE 35 34 34 ILE ILE A . n A 1 36 ARG 36 35 35 ARG ARG A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 THR 48 47 47 THR THR A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 TYR 50 49 49 TYR TYR A . n A 1 51 ASN 51 50 50 ASN ASN A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 PHE 53 52 52 PHE PHE A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 GLU 57 56 56 GLU GLU A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 ASN 62 61 61 ASN ASN A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 PHE 67 66 66 PHE PHE A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 GLN 70 69 69 GLN GLN A . n A 1 71 ILE 71 70 70 ILE ILE A . n A 1 72 ILE 72 71 71 ILE ILE A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 ILE 75 74 74 ILE ILE A . n A 1 76 SER 76 75 75 SER SER A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 TYR 78 77 77 TYR TYR A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 LYS 83 82 82 LYS LYS A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 TYR 86 85 85 TYR TYR A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 GLU 91 90 90 GLU GLU A . n A 1 92 THR 92 91 91 THR THR A . n A 1 93 LYS 93 92 92 LYS LYS A . n A 1 94 ARG 94 93 93 ARG ARG A . n A 1 95 LEU 95 94 94 LEU LEU A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 MSE 97 96 96 MSE MSE A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 PHE 100 99 99 PHE PHE A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 GLN 102 101 101 GLN GLN A . n A 1 103 ASN 103 102 102 ASN ASN A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 THR 105 104 104 THR THR A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 TYR 110 109 109 TYR TYR A . n A 1 111 SER 111 110 110 SER SER A . n A 1 112 ARG 112 111 111 ARG ARG A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 ALA 114 113 113 ALA ALA A . n A 1 115 GLY 115 114 114 GLY GLY A . n A 1 116 SER 116 115 115 SER SER A . n A 1 117 SER 117 116 116 SER SER A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 PRO 119 118 118 PRO PRO A . n A 1 120 ILE 120 119 119 ILE ILE A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 GLN 122 121 121 GLN GLN A . n A 1 123 CYS 123 122 122 CYS CYS A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 LYS 125 124 124 LYS LYS A . n A 1 126 GLN 126 125 125 GLN GLN A . n A 1 127 PHE 127 126 126 PHE PHE A . n A 1 128 GLU 128 127 127 GLU GLU A . n A 1 129 ASP 129 128 128 ASP ASP A . n A 1 130 ARG 130 129 129 ARG ARG A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 GLU 133 132 132 GLU GLU A . n A 1 134 PHE 134 133 133 PHE PHE A . n A 1 135 TYR 135 134 134 TYR TYR A . n A 1 136 SER 136 135 135 SER SER A . n A 1 137 ARG 137 136 136 ARG ARG A . n A 1 138 ASN 138 137 137 ASN ASN A . n A 1 139 ILE 139 138 138 ILE ILE A . n A 1 140 GLU 140 139 139 GLU GLU A . n A 1 141 TYR 141 140 140 TYR TYR A . n A 1 142 GLY 142 141 141 GLY GLY A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 LYS 144 143 143 LYS LYS A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 GLY 146 145 145 GLY GLY A . n A 1 147 VAL 147 146 146 VAL VAL A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 LYS 149 148 148 LYS LYS A . n A 1 150 ASN 150 149 149 ASN ASN A . n A 1 151 VAL 151 150 150 VAL VAL A . n A 1 152 PRO 152 151 151 PRO PRO A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 SER 154 153 153 SER SER A . n A 1 155 PRO 155 154 154 PRO PRO A . n A 1 156 ILE 156 155 155 ILE ILE A . n A 1 157 ALA 157 156 156 ALA ALA A . n A 1 158 HIS 158 157 157 HIS HIS A . n A 1 159 SER 159 158 158 SER SER A . n A 1 160 ILE 160 159 159 ILE ILE A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 ALA 162 161 161 ALA ALA A . n A 1 163 ILE 163 162 162 ILE ILE A . n A 1 164 GLU 164 163 163 GLU GLU A . n A 1 165 LYS 165 164 164 LYS LYS A . n A 1 166 PHE 166 165 165 PHE PHE A . n A 1 167 SER 167 166 166 SER SER A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 TYR 169 168 168 TYR TYR A . n A 1 170 LYS 170 169 169 LYS LYS A . n A 1 171 TRP 171 170 170 TRP TRP A . n A 1 172 VAL 172 171 171 VAL VAL A . n A 1 173 VAL 173 172 172 VAL VAL A . n A 1 174 LEU 174 173 173 LEU LEU A . n A 1 175 LYS 175 174 174 LYS LYS A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 ILE 177 176 176 ILE ILE A . n A 1 178 THR 178 177 177 THR THR A . n A 1 179 LYS 179 178 178 LYS LYS A . n A 1 180 GLU 180 179 179 GLU GLU A . n A 1 181 GLU 181 180 180 GLU GLU A . n A 1 182 MSE 182 181 181 MSE MSE A . n A 1 183 ILE 183 182 182 ILE ILE A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 MSE 185 184 184 MSE MSE A . n A 1 186 VAL 186 185 185 VAL VAL A . n A 1 187 LEU 187 186 186 LEU LEU A . n A 1 188 SER 188 187 187 SER SER A . n A 1 189 PHE 189 188 188 PHE PHE A . n A 1 190 HIS 190 189 189 HIS HIS A . n A 1 191 LYS 191 190 190 LYS LYS A . n A 1 192 THR 192 191 191 THR THR A . n A 1 193 LEU 193 192 192 LEU LEU A . n A 1 194 ALA 194 193 193 ALA ALA A . n A 1 195 VAL 195 194 194 VAL VAL A . n A 1 196 GLY 196 195 195 GLY GLY A . n A 1 197 LEU 197 196 196 LEU LEU A . n A 1 198 LEU 198 197 197 LEU LEU A . n A 1 199 VAL 199 198 198 VAL VAL A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 ASN 201 200 200 ASN ASN A . n A 1 202 ASP 202 201 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 202 1 EDO EDO A . C 3 HOH 1 203 2 HOH HOH A . C 3 HOH 2 204 3 HOH HOH A . C 3 HOH 3 205 4 HOH HOH A . C 3 HOH 4 206 5 HOH HOH A . C 3 HOH 5 207 6 HOH HOH A . C 3 HOH 6 208 7 HOH HOH A . C 3 HOH 7 209 8 HOH HOH A . C 3 HOH 8 210 9 HOH HOH A . C 3 HOH 9 211 10 HOH HOH A . C 3 HOH 10 212 11 HOH HOH A . C 3 HOH 11 213 12 HOH HOH A . C 3 HOH 12 214 13 HOH HOH A . C 3 HOH 13 215 14 HOH HOH A . C 3 HOH 14 216 15 HOH HOH A . C 3 HOH 15 217 16 HOH HOH A . C 3 HOH 16 218 17 HOH HOH A . C 3 HOH 17 219 18 HOH HOH A . C 3 HOH 18 220 19 HOH HOH A . C 3 HOH 19 221 20 HOH HOH A . C 3 HOH 20 222 21 HOH HOH A . C 3 HOH 21 223 22 HOH HOH A . C 3 HOH 22 224 23 HOH HOH A . C 3 HOH 23 225 24 HOH HOH A . C 3 HOH 24 226 25 HOH HOH A . C 3 HOH 25 227 26 HOH HOH A . C 3 HOH 26 228 27 HOH HOH A . C 3 HOH 27 229 28 HOH HOH A . C 3 HOH 28 230 29 HOH HOH A . C 3 HOH 29 231 30 HOH HOH A . C 3 HOH 30 232 31 HOH HOH A . C 3 HOH 31 233 32 HOH HOH A . C 3 HOH 32 234 33 HOH HOH A . C 3 HOH 33 235 34 HOH HOH A . C 3 HOH 34 236 35 HOH HOH A . C 3 HOH 35 237 36 HOH HOH A . C 3 HOH 36 238 37 HOH HOH A . C 3 HOH 37 239 38 HOH HOH A . C 3 HOH 38 240 39 HOH HOH A . C 3 HOH 39 241 40 HOH HOH A . C 3 HOH 40 242 41 HOH HOH A . C 3 HOH 41 243 42 HOH HOH A . C 3 HOH 42 244 43 HOH HOH A . C 3 HOH 43 245 44 HOH HOH A . C 3 HOH 44 246 45 HOH HOH A . C 3 HOH 45 247 46 HOH HOH A . C 3 HOH 46 248 47 HOH HOH A . C 3 HOH 47 249 48 HOH HOH A . C 3 HOH 48 250 49 HOH HOH A . C 3 HOH 49 251 50 HOH HOH A . C 3 HOH 50 252 51 HOH HOH A . C 3 HOH 51 253 52 HOH HOH A . C 3 HOH 52 254 53 HOH HOH A . C 3 HOH 53 255 54 HOH HOH A . C 3 HOH 54 256 55 HOH HOH A . C 3 HOH 55 257 56 HOH HOH A . C 3 HOH 56 258 57 HOH HOH A . C 3 HOH 57 259 58 HOH HOH A . C 3 HOH 58 260 59 HOH HOH A . C 3 HOH 59 261 60 HOH HOH A . C 3 HOH 60 262 61 HOH HOH A . C 3 HOH 61 263 62 HOH HOH A . C 3 HOH 62 264 63 HOH HOH A . C 3 HOH 63 265 64 HOH HOH A . C 3 HOH 64 266 65 HOH HOH A . C 3 HOH 65 267 66 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 97 A MSE 96 ? MET SELENOMETHIONINE 2 A MSE 182 A MSE 181 ? MET SELENOMETHIONINE 3 A MSE 185 A MSE 184 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4640 ? 1 MORE -22 ? 1 'SSA (A^2)' 16630 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 215 ? C HOH . 2 1 A HOH 265 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' pdbx_struct_special_symmetry 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 23.0622 _pdbx_refine_tls.origin_y 30.0681 _pdbx_refine_tls.origin_z 11.4058 _pdbx_refine_tls.T[1][1] 0.0694 _pdbx_refine_tls.T[2][2] 0.1424 _pdbx_refine_tls.T[3][3] 0.0157 _pdbx_refine_tls.T[1][2] 0.0258 _pdbx_refine_tls.T[1][3] -0.0092 _pdbx_refine_tls.T[2][3] 0.0033 _pdbx_refine_tls.L[1][1] 1.7222 _pdbx_refine_tls.L[2][2] 1.6093 _pdbx_refine_tls.L[3][3] 0.7694 _pdbx_refine_tls.L[1][2] 0.3749 _pdbx_refine_tls.L[1][3] -0.2248 _pdbx_refine_tls.L[2][3] 0.0656 _pdbx_refine_tls.S[1][1] 0.0020 _pdbx_refine_tls.S[2][2] -0.0668 _pdbx_refine_tls.S[3][3] 0.0648 _pdbx_refine_tls.S[1][2] -0.3579 _pdbx_refine_tls.S[1][3] -0.0621 _pdbx_refine_tls.S[2][3] -0.1215 _pdbx_refine_tls.S[2][1] 0.2336 _pdbx_refine_tls.S[3][1] 0.1086 _pdbx_refine_tls.S[3][2] -0.0276 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 8 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 200 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3LWJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 200 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 245 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 102 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -116.51 _pdbx_validate_torsion.psi 60.09 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 8 ? CG ? A GLN 9 CG 2 1 Y 1 A GLN 8 ? CD ? A GLN 9 CD 3 1 Y 1 A GLN 8 ? OE1 ? A GLN 9 OE1 4 1 Y 1 A GLN 8 ? NE2 ? A GLN 9 NE2 5 1 Y 1 A LYS 10 ? CG ? A LYS 11 CG 6 1 Y 1 A LYS 10 ? CD ? A LYS 11 CD 7 1 Y 1 A LYS 10 ? CE ? A LYS 11 CE 8 1 Y 1 A LYS 10 ? NZ ? A LYS 11 NZ 9 1 Y 1 A ARG 35 ? CG ? A ARG 36 CG 10 1 Y 1 A ARG 35 ? CD ? A ARG 36 CD 11 1 Y 1 A ARG 35 ? NE ? A ARG 36 NE 12 1 Y 1 A ARG 35 ? CZ ? A ARG 36 CZ 13 1 Y 1 A ARG 35 ? NH1 ? A ARG 36 NH1 14 1 Y 1 A ARG 35 ? NH2 ? A ARG 36 NH2 15 1 Y 1 A GLU 132 ? CD ? A GLU 133 CD 16 1 Y 1 A GLU 132 ? OE1 ? A GLU 133 OE1 17 1 Y 1 A GLU 132 ? OE2 ? A GLU 133 OE2 18 1 Y 1 A GLU 183 ? CD ? A GLU 184 CD 19 1 Y 1 A GLU 183 ? OE1 ? A GLU 184 OE1 20 1 Y 1 A GLU 183 ? OE2 ? A GLU 184 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A PRO 2 ? A PRO 3 4 1 Y 1 A ILE 3 ? A ILE 4 5 1 Y 1 A PRO 4 ? A PRO 5 6 1 Y 1 A LEU 5 ? A LEU 6 7 1 Y 1 A GLU 6 ? A GLU 7 8 1 Y 1 A LYS 7 ? A LYS 8 9 1 Y 1 A ASP 201 ? A ASP 202 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #