data_3LWO # _entry.id 3LWO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LWO NDB NA0462 RCSB RCSB057823 WWPDB D_1000057823 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3LWP . unspecified PDB 3LWQ . unspecified PDB 3LWR . unspecified PDB 3LWV . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LWO _pdbx_database_status.recvd_initial_deposition_date 2010-02-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhou, J.' 1 'Liang, B.' 2 'Lv, C.' 3 'Yang, W.' 4 'Li, H.' 5 # _citation.id primary _citation.title ;Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 401 _citation.page_first 690 _citation.page_last 695 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20615421 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.06.061 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhou, J.' 1 primary 'Lv, C.' 2 primary 'Liang, B.' 3 primary 'Chen, M.' 4 primary 'Yang, W.' 5 primary 'Li, H.' 6 # _cell.entry_id 3LWO _cell.length_a 184.523 _cell.length_b 62.698 _cell.length_c 85.335 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LWO _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pseudouridine synthase Cbf5' 38625.027 1 5.4.99.- ? ? ? 2 polymer man 'Ribosome biogenesis protein Nop10' 7242.618 1 ? ? ? ? 3 polymer man '50S ribosomal protein L7Ae' 13414.664 1 ? ? ? ? 4 polymer syn 'H/ACA RNA' 18687.193 1 ? ? ? ? 5 polymer syn "5'-R(*GP*AP*GP*CP*GP*(5BU)P*GP*CP*GP*GP*UP*UP*U)-3'" 4269.406 1 ? ? ? ? 6 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 7 water nat water 18.015 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'tRNA pseudouridine 55 synthase, Psi55 synthase, tRNA-uridine isomerase, tRNA pseudouridylate synthase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV EKVFMPRDWYPKLWEKRDRS ; ;MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV EKVFMPRDWYPKLWEKRDRS ; A ? 2 'polypeptide(L)' no no MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK B ? 3 'polypeptide(L)' no no ;MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK ; ;MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK ; C ? 4 polyribonucleotide no no GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA D ? 5 polyribonucleotide no yes 'GAGCG(5BU)GCGGUUU' GAGCGUGCGGUUU E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ARG n 1 4 ASP n 1 5 GLU n 1 6 VAL n 1 7 ARG n 1 8 ARG n 1 9 ILE n 1 10 LEU n 1 11 PRO n 1 12 ALA n 1 13 ASP n 1 14 ILE n 1 15 LYS n 1 16 ARG n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ILE n 1 21 LYS n 1 22 ASP n 1 23 GLU n 1 24 ASN n 1 25 ALA n 1 26 GLU n 1 27 THR n 1 28 ASN n 1 29 PRO n 1 30 ASP n 1 31 TRP n 1 32 GLY n 1 33 PHE n 1 34 PRO n 1 35 PRO n 1 36 GLU n 1 37 LYS n 1 38 ARG n 1 39 PRO n 1 40 ILE n 1 41 GLU n 1 42 MET n 1 43 HIS n 1 44 ILE n 1 45 GLN n 1 46 PHE n 1 47 GLY n 1 48 VAL n 1 49 ILE n 1 50 ASN n 1 51 LEU n 1 52 ASP n 1 53 LYS n 1 54 PRO n 1 55 PRO n 1 56 GLY n 1 57 PRO n 1 58 THR n 1 59 SER n 1 60 HIS n 1 61 GLU n 1 62 VAL n 1 63 VAL n 1 64 ALA n 1 65 TRP n 1 66 ILE n 1 67 LYS n 1 68 LYS n 1 69 ILE n 1 70 LEU n 1 71 ASN n 1 72 LEU n 1 73 GLU n 1 74 LYS n 1 75 ALA n 1 76 GLY n 1 77 HIS n 1 78 GLY n 1 79 GLY n 1 80 THR n 1 81 LEU n 1 82 ASP n 1 83 PRO n 1 84 LYS n 1 85 VAL n 1 86 SER n 1 87 GLY n 1 88 VAL n 1 89 LEU n 1 90 PRO n 1 91 VAL n 1 92 ALA n 1 93 LEU n 1 94 GLU n 1 95 LYS n 1 96 ALA n 1 97 THR n 1 98 ARG n 1 99 VAL n 1 100 VAL n 1 101 GLN n 1 102 ALA n 1 103 LEU n 1 104 LEU n 1 105 PRO n 1 106 ALA n 1 107 GLY n 1 108 LYS n 1 109 GLU n 1 110 TYR n 1 111 VAL n 1 112 ALA n 1 113 LEU n 1 114 MET n 1 115 HIS n 1 116 LEU n 1 117 HIS n 1 118 GLY n 1 119 ASP n 1 120 VAL n 1 121 PRO n 1 122 GLU n 1 123 ASP n 1 124 LYS n 1 125 ILE n 1 126 ILE n 1 127 GLN n 1 128 VAL n 1 129 MET n 1 130 LYS n 1 131 GLU n 1 132 PHE n 1 133 GLU n 1 134 GLY n 1 135 GLU n 1 136 ILE n 1 137 ILE n 1 138 GLN n 1 139 ARG n 1 140 PRO n 1 141 PRO n 1 142 LEU n 1 143 ARG n 1 144 SER n 1 145 ALA n 1 146 VAL n 1 147 LYS n 1 148 ARG n 1 149 ARG n 1 150 LEU n 1 151 ARG n 1 152 THR n 1 153 ARG n 1 154 LYS n 1 155 VAL n 1 156 TYR n 1 157 TYR n 1 158 ILE n 1 159 GLU n 1 160 VAL n 1 161 LEU n 1 162 GLU n 1 163 ILE n 1 164 GLU n 1 165 GLY n 1 166 ARG n 1 167 ASP n 1 168 VAL n 1 169 LEU n 1 170 PHE n 1 171 ARG n 1 172 VAL n 1 173 GLY n 1 174 VAL n 1 175 GLU n 1 176 ALA n 1 177 GLY n 1 178 THR n 1 179 TYR n 1 180 ILE n 1 181 ARG n 1 182 SER n 1 183 LEU n 1 184 ILE n 1 185 HIS n 1 186 HIS n 1 187 ILE n 1 188 GLY n 1 189 LEU n 1 190 ALA n 1 191 LEU n 1 192 GLY n 1 193 VAL n 1 194 GLY n 1 195 ALA n 1 196 HIS n 1 197 MET n 1 198 SER n 1 199 GLU n 1 200 LEU n 1 201 ARG n 1 202 ARG n 1 203 THR n 1 204 ARG n 1 205 SER n 1 206 GLY n 1 207 PRO n 1 208 PHE n 1 209 LYS n 1 210 GLU n 1 211 ASP n 1 212 GLU n 1 213 THR n 1 214 LEU n 1 215 ILE n 1 216 THR n 1 217 LEU n 1 218 HIS n 1 219 ASP n 1 220 LEU n 1 221 VAL n 1 222 ASP n 1 223 TYR n 1 224 TYR n 1 225 TYR n 1 226 PHE n 1 227 TRP n 1 228 LYS n 1 229 GLU n 1 230 ASP n 1 231 GLY n 1 232 ILE n 1 233 GLU n 1 234 GLU n 1 235 TYR n 1 236 PHE n 1 237 ARG n 1 238 LYS n 1 239 ALA n 1 240 ILE n 1 241 GLN n 1 242 PRO n 1 243 MET n 1 244 GLU n 1 245 LYS n 1 246 ALA n 1 247 VAL n 1 248 GLU n 1 249 HIS n 1 250 LEU n 1 251 PRO n 1 252 LYS n 1 253 VAL n 1 254 TRP n 1 255 ILE n 1 256 LYS n 1 257 ASP n 1 258 SER n 1 259 ALA n 1 260 VAL n 1 261 ALA n 1 262 ALA n 1 263 VAL n 1 264 THR n 1 265 HIS n 1 266 GLY n 1 267 ALA n 1 268 ASP n 1 269 LEU n 1 270 ALA n 1 271 VAL n 1 272 PRO n 1 273 GLY n 1 274 ILE n 1 275 ALA n 1 276 LYS n 1 277 LEU n 1 278 HIS n 1 279 ALA n 1 280 GLY n 1 281 ILE n 1 282 LYS n 1 283 ARG n 1 284 GLY n 1 285 ASP n 1 286 LEU n 1 287 VAL n 1 288 ALA n 1 289 ILE n 1 290 MET n 1 291 THR n 1 292 LEU n 1 293 LYS n 1 294 ASP n 1 295 GLU n 1 296 LEU n 1 297 VAL n 1 298 ALA n 1 299 LEU n 1 300 GLY n 1 301 LYS n 1 302 ALA n 1 303 MET n 1 304 MET n 1 305 THR n 1 306 SER n 1 307 GLN n 1 308 GLU n 1 309 MET n 1 310 LEU n 1 311 GLU n 1 312 LYS n 1 313 THR n 1 314 LYS n 1 315 GLY n 1 316 ILE n 1 317 ALA n 1 318 VAL n 1 319 ASP n 1 320 VAL n 1 321 GLU n 1 322 LYS n 1 323 VAL n 1 324 PHE n 1 325 MET n 1 326 PRO n 1 327 ARG n 1 328 ASP n 1 329 TRP n 1 330 TYR n 1 331 PRO n 1 332 LYS n 1 333 LEU n 1 334 TRP n 1 335 GLU n 1 336 LYS n 1 337 ARG n 1 338 ASP n 1 339 ARG n 1 340 SER n 2 1 MET n 2 2 ARG n 2 3 PHE n 2 4 ARG n 2 5 ILE n 2 6 ARG n 2 7 LYS n 2 8 CYS n 2 9 PRO n 2 10 LYS n 2 11 CYS n 2 12 GLY n 2 13 ARG n 2 14 TYR n 2 15 THR n 2 16 LEU n 2 17 LYS n 2 18 GLU n 2 19 VAL n 2 20 CYS n 2 21 PRO n 2 22 VAL n 2 23 CYS n 2 24 GLY n 2 25 GLU n 2 26 LYS n 2 27 THR n 2 28 LYS n 2 29 VAL n 2 30 ALA n 2 31 HIS n 2 32 PRO n 2 33 PRO n 2 34 ARG n 2 35 PHE n 2 36 SER n 2 37 PRO n 2 38 GLU n 2 39 ASP n 2 40 PRO n 2 41 TYR n 2 42 GLY n 2 43 GLU n 2 44 TYR n 2 45 ARG n 2 46 ARG n 2 47 ARG n 2 48 TRP n 2 49 LYS n 2 50 ARG n 2 51 GLU n 2 52 VAL n 2 53 LEU n 2 54 GLY n 2 55 ILE n 2 56 GLY n 2 57 ARG n 2 58 LYS n 2 59 GLU n 2 60 LYS n 3 1 MET n 3 2 ALA n 3 3 LYS n 3 4 PRO n 3 5 SER n 3 6 TYR n 3 7 VAL n 3 8 LYS n 3 9 PHE n 3 10 GLU n 3 11 VAL n 3 12 PRO n 3 13 LYS n 3 14 GLU n 3 15 LEU n 3 16 ALA n 3 17 GLU n 3 18 LYS n 3 19 ALA n 3 20 LEU n 3 21 GLN n 3 22 ALA n 3 23 VAL n 3 24 GLU n 3 25 ILE n 3 26 ALA n 3 27 ARG n 3 28 ASP n 3 29 THR n 3 30 GLY n 3 31 LYS n 3 32 ILE n 3 33 ARG n 3 34 LYS n 3 35 GLY n 3 36 THR n 3 37 ASN n 3 38 GLU n 3 39 THR n 3 40 THR n 3 41 LYS n 3 42 ALA n 3 43 VAL n 3 44 GLU n 3 45 ARG n 3 46 GLY n 3 47 GLN n 3 48 ALA n 3 49 LYS n 3 50 LEU n 3 51 VAL n 3 52 ILE n 3 53 ILE n 3 54 ALA n 3 55 GLU n 3 56 ASP n 3 57 VAL n 3 58 ASP n 3 59 PRO n 3 60 GLU n 3 61 GLU n 3 62 ILE n 3 63 VAL n 3 64 ALA n 3 65 HIS n 3 66 LEU n 3 67 PRO n 3 68 PRO n 3 69 LEU n 3 70 CYS n 3 71 GLU n 3 72 GLU n 3 73 LYS n 3 74 GLU n 3 75 ILE n 3 76 PRO n 3 77 TYR n 3 78 ILE n 3 79 TYR n 3 80 VAL n 3 81 PRO n 3 82 SER n 3 83 LYS n 3 84 LYS n 3 85 GLU n 3 86 LEU n 3 87 GLY n 3 88 ALA n 3 89 ALA n 3 90 ALA n 3 91 GLY n 3 92 ILE n 3 93 GLU n 3 94 VAL n 3 95 ALA n 3 96 ALA n 3 97 ALA n 3 98 SER n 3 99 VAL n 3 100 ALA n 3 101 ILE n 3 102 ILE n 3 103 GLU n 3 104 PRO n 3 105 GLY n 3 106 LYS n 3 107 ALA n 3 108 ARG n 3 109 ASP n 3 110 LEU n 3 111 VAL n 3 112 GLU n 3 113 GLU n 3 114 ILE n 3 115 ALA n 3 116 MET n 3 117 LYS n 3 118 VAL n 3 119 LYS n 3 120 GLU n 3 121 LEU n 3 122 MET n 3 123 LYS n 4 1 G n 4 2 G n 4 3 G n 4 4 C n 4 5 C n 4 6 A n 4 7 C n 4 8 G n 4 9 G n 4 10 A n 4 11 A n 4 12 A n 4 13 C n 4 14 C n 4 15 G n 4 16 C n 4 17 G n 4 18 C n 4 19 G n 4 20 C n 4 21 G n 4 22 G n 4 23 U n 4 24 G n 4 25 A n 4 26 U n 4 27 C n 4 28 A n 4 29 A n 4 30 U n 4 31 G n 4 32 A n 4 33 G n 4 34 C n 4 35 C n 4 36 G n 4 37 C n 4 38 G n 4 39 U n 4 40 U n 4 41 C n 4 42 G n 4 43 C n 4 44 U n 4 45 C n 4 46 C n 4 47 C n 4 48 G n 4 49 U n 4 50 G n 4 51 G n 4 52 C n 4 53 C n 4 54 C n 4 55 A n 4 56 C n 4 57 A n 4 58 A n 5 1 G n 5 2 A n 5 3 G n 5 4 C n 5 5 G n 5 6 5BU n 5 7 G n 5 8 C n 5 9 G n 5 10 G n 5 11 U n 5 12 U n 5 13 U n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? 'truB, PF1785' ? ? ? ? ? ? 'Pyrococcus furiosus' 2261 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? ? PF1141 ? ? ? ? ? ? 'Pyrococcus furiosus' 2261 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? ? ? 'PF1367, rpl7ae' ? ? ? ? ? ? 'Pyrococcus furiosus' 2261 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 4 1 sample ? ? ? ? ? 'In vitro transcription' 5 1 sample ? ? ? ? ? 'commercial source' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TRUB_PYRFU Q7LWY0 1 ;MARDEVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGT LDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEV LEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAI QPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDV EKVFMPRDWYPKLWEKRDRS ; 1 ? 2 UNP NOP10_PYRFU Q8U1R4 2 MRFRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGIGRKEK 1 ? 3 UNP RL7A_PYRFU Q8U160 3 ;MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK ; 1 ? 4 PDB 3LWO 3LWO 4 GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA ? ? 5 PDB 3LWO 3LWO 5 GAGCGUGCGGUUU ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LWO A 1 ? 340 ? Q7LWY0 1 ? 340 ? 4 343 2 2 3LWO B 1 ? 60 ? Q8U1R4 1 ? 60 ? 1 60 3 3 3LWO C 1 ? 123 ? Q8U160 1 ? 123 ? 2 124 4 4 3LWO D 1 ? 58 ? 3LWO 1 ? 58 ? 1 58 5 5 3LWO E 1 ? 13 ? 3LWO 5 ? 17 ? 5 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3LWO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # loop_ _exptl_crystal.id _exptl_crystal.density_meas _exptl_crystal.density_Matthews _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 ? 3.00 59.02 ? ? ? 2 ? ? ? ? ? ? 3 ? ? ? ? ? ? 4 ? ? ? ? ? ? 5 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.temp _exptl_crystal_grow.temp_details _exptl_crystal_grow.pH _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, HANGING DROP' ? ? ? 'VAPOR DIFFUSION, HANGING DROP' ? 2 'VAPOR DIFFUSION, HANGING DROP' ? ? ? 'VAPOR DIFFUSION, HANGING DROP' ? 3 'VAPOR DIFFUSION, HANGING DROP' ? ? ? 'VAPOR DIFFUSION, HANGING DROP' ? 4 'VAPOR DIFFUSION, HANGING DROP' ? ? ? 'VAPOR DIFFUSION, HANGING DROP' ? 5 'VAPOR DIFFUSION, HANGING DROP' ? ? ? 'VAPOR DIFFUSION, HANGING DROP' ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2009-03-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3LWO _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.8 _reflns.number_obs 23154 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 94.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.48 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2145 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LWO _refine.ls_number_reflns_obs 23107 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.89 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.667 _refine.ls_d_res_high 2.855 _refine.ls_percent_reflns_obs 52.07 _refine.ls_R_factor_obs 0.1897 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1869 _refine.ls_R_factor_R_free 0.2402 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.12 _refine.ls_number_reflns_R_free 1184 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -5.4337 _refine.aniso_B[2][2] 2.1723 _refine.aniso_B[3][3] -17.6456 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.309 _refine.solvent_model_param_bsol 52.395 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.88 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3881 _refine_hist.pdbx_number_atoms_nucleic_acid 1514 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 5399 _refine_hist.d_res_high 2.855 _refine_hist.d_res_low 42.667 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 5661 'X-RAY DIFFRACTION' ? f_angle_d 1.136 ? ? 7991 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 22.187 ? ? 2477 'X-RAY DIFFRACTION' ? f_chiral_restr 0.067 ? ? 952 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 753 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.8552 2.9852 2192 0.2853 42.00 0.3333 . . 112 . . . . 'X-RAY DIFFRACTION' . 2.9852 3.1425 2758 0.2568 52.00 0.3363 . . 154 . . . . 'X-RAY DIFFRACTION' . 3.1425 3.3393 2770 0.2323 53.00 0.3190 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.3393 3.5970 2774 0.1885 53.00 0.2552 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.5970 3.9588 2801 0.1559 53.00 0.2295 . . 152 . . . . 'X-RAY DIFFRACTION' . 3.9588 4.5310 2824 0.1360 53.00 0.2043 . . 144 . . . . 'X-RAY DIFFRACTION' . 4.5310 5.7065 2830 0.1493 54.00 0.1993 . . 169 . . . . 'X-RAY DIFFRACTION' . 5.7065 42.6722 2974 0.1994 57.00 0.2263 . . 166 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3LWO _struct.title 'Structure of H/ACA RNP bound to a substrate RNA containing 5BrU' _struct.pdbx_descriptor 'tRNA pseudouridine synthase B (E.C.5.4.99.-), Ribosome biogenesis protein Nop10, 50S ribosomal protein L7Ae/RNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LWO _struct_keywords.pdbx_keywords 'ISOMERASE/RNA BINDING PROTEIN/RNA' _struct_keywords.text ;H/ACA pseudouridine synthase, Isomerase, tRNA processing, Ribonucleoprotein, Ribosome biogenesis, rRNA processing, Ribosomal protein, RNA-binding, ISOMERASE-RNA BINDING PROTEIN-RNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? # loop_ _struct_biol.id _struct_biol.details 1 P21212 2 P21212 3 P21212 4 P21212 5 P21212 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 10 ? ILE A 14 ? LEU A 13 ILE A 17 5 ? 5 HELX_P HELX_P2 2 PRO A 34 ? ARG A 38 ? PRO A 37 ARG A 41 5 ? 5 HELX_P HELX_P3 3 PRO A 39 ? PHE A 46 ? PRO A 42 PHE A 49 1 ? 8 HELX_P HELX_P4 4 THR A 58 ? LEU A 70 ? THR A 61 LEU A 73 1 ? 13 HELX_P HELX_P5 5 LYS A 95 ? ARG A 98 ? LYS A 98 ARG A 101 5 ? 4 HELX_P HELX_P6 6 VAL A 99 ? LEU A 104 ? VAL A 102 LEU A 107 1 ? 6 HELX_P HELX_P7 7 PRO A 121 ? GLU A 131 ? PRO A 124 GLU A 134 1 ? 11 HELX_P HELX_P8 8 TYR A 179 ? GLY A 192 ? TYR A 182 GLY A 195 1 ? 14 HELX_P HELX_P9 9 LEU A 217 ? GLU A 229 ? LEU A 220 GLU A 232 1 ? 13 HELX_P HELX_P10 10 GLU A 233 ? ALA A 239 ? GLU A 236 ALA A 242 1 ? 7 HELX_P HELX_P11 11 GLU A 244 ? GLU A 248 ? GLU A 247 GLU A 251 5 ? 5 HELX_P HELX_P12 12 LYS A 256 ? HIS A 265 ? LYS A 259 HIS A 268 1 ? 10 HELX_P HELX_P13 13 THR A 305 ? LYS A 312 ? THR A 308 LYS A 315 1 ? 8 HELX_P HELX_P14 14 TYR B 41 ? GLY B 54 ? TYR B 41 GLY B 54 1 ? 14 HELX_P HELX_P15 15 PRO C 12 ? GLY C 30 ? PRO C 13 GLY C 31 1 ? 19 HELX_P HELX_P16 16 GLY C 35 ? GLU C 44 ? GLY C 36 GLU C 45 1 ? 10 HELX_P HELX_P17 17 PRO C 59 ? VAL C 63 ? PRO C 60 VAL C 64 5 ? 5 HELX_P HELX_P18 18 HIS C 65 ? LYS C 73 ? HIS C 66 LYS C 74 1 ? 9 HELX_P HELX_P19 19 LYS C 83 ? ALA C 89 ? LYS C 84 ALA C 90 1 ? 7 HELX_P HELX_P20 20 ALA C 107 ? VAL C 118 ? ALA C 108 VAL C 119 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 23 SG ? ? B CYS 8 B CYS 23 1_555 ? ? ? ? ? ? ? 2.042 ? disulf2 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 11 SG ? ? B CYS 8 B CYS 11 1_555 ? ? ? ? ? ? ? 2.059 ? disulf3 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 20 SG ? ? B CYS 8 B CYS 20 1_555 ? ? ? ? ? ? ? 2.082 ? disulf4 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 23 SG ? ? B CYS 11 B CYS 23 1_555 ? ? ? ? ? ? ? 2.028 ? disulf5 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 20 SG ? ? B CYS 11 B CYS 20 1_555 ? ? ? ? ? ? ? 2.033 ? disulf6 disulf ? ? B CYS 20 SG ? ? ? 1_555 B CYS 23 SG ? ? B CYS 20 B CYS 23 1_555 ? ? ? ? ? ? ? 2.047 ? covale1 covale ? ? E G 5 "O3'" ? ? ? 1_555 E 5BU 6 P ? ? E G 9 E 5BU 10 1_555 ? ? ? ? ? ? ? 1.602 ? covale2 covale ? ? E 5BU 6 "O3'" ? ? ? 1_555 E G 7 P ? ? E 5BU 10 E G 11 1_555 ? ? ? ? ? ? ? 1.588 ? metalc1 metalc ? ? B CYS 11 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 11 B ZN 61 1_555 ? ? ? ? ? ? ? 2.990 ? hydrog1 hydrog ? ? D G 1 N1 ? ? ? 1_555 D C 54 N3 ? ? D G 1 D C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? D G 1 N2 ? ? ? 1_555 D C 54 O2 ? ? D G 1 D C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? D G 1 O6 ? ? ? 1_555 D C 54 N4 ? ? D G 1 D C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? D G 2 N1 ? ? ? 1_555 D C 53 N3 ? ? D G 2 D C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? D G 2 N2 ? ? ? 1_555 D C 53 O2 ? ? D G 2 D C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? D G 2 O6 ? ? ? 1_555 D C 53 N4 ? ? D G 2 D C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? D G 3 N1 ? ? ? 1_555 D C 52 N3 ? ? D G 3 D C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? D G 3 N2 ? ? ? 1_555 D C 52 O2 ? ? D G 3 D C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? D G 3 O6 ? ? ? 1_555 D C 52 N4 ? ? D G 3 D C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? D C 4 N3 ? ? ? 1_555 D G 51 N1 ? ? D C 4 D G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? D C 4 N4 ? ? ? 1_555 D G 51 O6 ? ? D C 4 D G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? D C 4 O2 ? ? ? 1_555 D G 51 N2 ? ? D C 4 D G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? D C 5 N3 ? ? ? 1_555 D G 50 N1 ? ? D C 5 D G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? D C 5 N4 ? ? ? 1_555 D G 50 O6 ? ? D C 5 D G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? D C 5 O2 ? ? ? 1_555 D G 50 N2 ? ? D C 5 D G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? D A 6 N1 ? ? ? 1_555 D U 49 N3 ? ? D A 6 D U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? D A 6 N6 ? ? ? 1_555 D U 49 O4 ? ? D A 6 D U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? D C 7 N3 ? ? ? 1_555 D G 48 N1 ? ? D C 7 D G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? D C 7 N4 ? ? ? 1_555 D G 48 O6 ? ? D C 7 D G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? D C 7 O2 ? ? ? 1_555 D G 48 N2 ? ? D C 7 D G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? D G 8 N1 ? ? ? 1_555 D C 47 N3 ? ? D G 8 D C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? D G 8 N2 ? ? ? 1_555 D C 47 O2 ? ? D G 8 D C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? D G 8 O6 ? ? ? 1_555 D C 47 N4 ? ? D G 8 D C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? D G 9 N1 ? ? ? 1_555 D C 46 N3 ? ? D G 9 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? D G 9 N2 ? ? ? 1_555 D C 46 O2 ? ? D G 9 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? D G 9 O6 ? ? ? 1_555 D C 46 N4 ? ? D G 9 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? D A 10 N1 ? ? ? 1_555 E U 13 N3 ? ? D A 10 E U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? D A 10 N6 ? ? ? 1_555 E U 13 O4 ? ? D A 10 E U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? D A 11 N1 ? ? ? 1_555 E U 12 N3 ? ? D A 11 E U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? D A 11 N6 ? ? ? 1_555 E U 12 O4 ? ? D A 11 E U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? D A 12 N1 ? ? ? 1_555 E U 11 N3 ? ? D A 12 E U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? D A 12 N6 ? ? ? 1_555 E U 11 O4 ? ? D A 12 E U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? D C 13 N3 ? ? ? 1_555 E G 10 N1 ? ? D C 13 E G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? D C 13 N4 ? ? ? 1_555 E G 10 O6 ? ? D C 13 E G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? D C 13 O2 ? ? ? 1_555 E G 10 N2 ? ? D C 13 E G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? D C 14 N3 ? ? ? 1_555 E G 9 N1 ? ? D C 14 E G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? D C 14 N4 ? ? ? 1_555 E G 9 O6 ? ? D C 14 E G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? D C 14 O2 ? ? ? 1_555 E G 9 N2 ? ? D C 14 E G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? D G 15 N1 ? ? ? 1_555 E C 8 N3 ? ? D G 15 E C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? D G 15 N2 ? ? ? 1_555 E C 8 O2 ? ? D G 15 E C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? D G 15 O6 ? ? ? 1_555 E C 8 N4 ? ? D G 15 E C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? D C 16 N4 ? ? ? 1_555 D U 40 O4 ? ? D C 16 D U 40 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? hydrog43 hydrog ? ? D C 16 O2 ? ? ? 1_555 E G 7 N2 ? ? D C 16 E G 11 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog44 hydrog ? ? D G 17 N1 ? ? ? 1_555 D U 39 O2 ? ? D G 17 D U 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog45 hydrog ? ? D G 17 O6 ? ? ? 1_555 D U 39 N3 ? ? D G 17 D U 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog46 hydrog ? ? D C 18 N3 ? ? ? 1_555 D G 38 N1 ? ? D C 18 D G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? D C 18 N4 ? ? ? 1_555 D G 38 O6 ? ? D C 18 D G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? D C 18 O2 ? ? ? 1_555 D G 38 N2 ? ? D C 18 D G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? D G 19 N1 ? ? ? 1_555 D C 37 N3 ? ? D G 19 D C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? D G 19 N2 ? ? ? 1_555 D C 37 O2 ? ? D G 19 D C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? D G 19 O6 ? ? ? 1_555 D C 37 N4 ? ? D G 19 D C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? D C 20 N3 ? ? ? 1_555 D G 36 N1 ? ? D C 20 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? D C 20 N4 ? ? ? 1_555 D G 36 O6 ? ? D C 20 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? D C 20 O2 ? ? ? 1_555 D G 36 N2 ? ? D C 20 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? D G 21 N1 ? ? ? 1_555 D C 35 N3 ? ? D G 21 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? D G 21 N2 ? ? ? 1_555 D C 35 O2 ? ? D G 21 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? D G 21 O6 ? ? ? 1_555 D C 35 N4 ? ? D G 21 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? D G 22 N1 ? ? ? 1_555 D C 34 N3 ? ? D G 22 D C 34 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog59 hydrog ? ? D U 23 N3 ? ? ? 1_555 D G 33 O6 ? ? D U 23 D G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog60 hydrog ? ? D U 23 O2 ? ? ? 1_555 D G 33 N1 ? ? D U 23 D G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog61 hydrog ? ? D G 24 N2 ? ? ? 1_555 D A 32 N7 ? ? D G 24 D A 32 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog62 hydrog ? ? D A 25 N6 ? ? ? 1_555 D G 31 N3 ? ? D A 25 D G 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog63 hydrog ? ? D A 25 N7 ? ? ? 1_555 D G 31 N2 ? ? D A 25 D G 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog64 hydrog ? ? D C 41 N3 ? ? ? 1_555 E G 5 N1 ? ? D C 41 E G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? D C 41 N4 ? ? ? 1_555 E G 5 O6 ? ? D C 41 E G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? D C 41 O2 ? ? ? 1_555 E G 5 N2 ? ? D C 41 E G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? D G 42 N1 ? ? ? 1_555 E C 4 N3 ? ? D G 42 E C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? D G 42 N2 ? ? ? 1_555 E C 4 O2 ? ? D G 42 E C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? D G 42 O6 ? ? ? 1_555 E C 4 N4 ? ? D G 42 E C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? D C 43 N3 ? ? ? 1_555 E G 3 N1 ? ? D C 43 E G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog71 hydrog ? ? D C 43 N4 ? ? ? 1_555 E G 3 O6 ? ? D C 43 E G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog72 hydrog ? ? D C 43 O2 ? ? ? 1_555 E G 3 N2 ? ? D C 43 E G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog73 hydrog ? ? D U 44 N3 ? ? ? 1_555 E A 2 N1 ? ? D U 44 E A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog74 hydrog ? ? D U 44 O4 ? ? ? 1_555 E A 2 N6 ? ? D U 44 E A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog75 hydrog ? ? D C 45 N3 ? ? ? 1_555 E G 1 N1 ? ? D C 45 E G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog76 hydrog ? ? D C 45 N4 ? ? ? 1_555 E G 1 O6 ? ? D C 45 E G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog77 hydrog ? ? D C 45 O2 ? ? ? 1_555 E G 1 N2 ? ? D C 45 E G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog78 hydrog ? ? D C 53 O2 ? ? ? 1_555 D A 55 N6 ? ? D C 53 D A 55 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 58 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 59 _struct_mon_prot_cis.auth_asym_id C _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 59 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 60 _struct_mon_prot_cis.pdbx_auth_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.23 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 8 ? C ? 7 ? D ? 3 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 18 ? ILE A 20 ? VAL A 21 ILE A 23 A 2 ILE A 274 ? HIS A 278 ? ILE A 277 HIS A 281 A 3 LYS A 252 ? ILE A 255 ? LYS A 255 ILE A 258 A 4 LEU A 286 ? THR A 291 ? LEU A 289 THR A 294 A 5 LEU A 296 ? ALA A 302 ? LEU A 299 ALA A 305 A 6 ILE A 316 ? VAL A 323 ? ILE A 319 VAL A 326 A 7 LEU A 269 ? ALA A 270 ? LEU A 272 ALA A 273 B 1 ILE A 240 ? PRO A 242 ? ILE A 243 PRO A 245 B 2 GLY A 47 ? LYS A 53 ? GLY A 50 LYS A 56 B 3 SER A 86 ? LEU A 93 ? SER A 89 LEU A 96 B 4 ALA A 195 ? SER A 205 ? ALA A 198 SER A 208 B 5 LYS A 108 ? LEU A 116 ? LYS A 111 LEU A 119 B 6 ASP A 167 ? VAL A 174 ? ASP A 170 VAL A 177 B 7 ARG A 151 ? GLU A 164 ? ARG A 154 GLU A 167 B 8 GLY A 134 ? GLN A 138 ? GLY A 137 GLN A 141 C 1 ILE A 215 ? THR A 216 ? ILE A 218 THR A 219 C 2 GLY A 47 ? LYS A 53 ? GLY A 50 LYS A 56 C 3 SER A 86 ? LEU A 93 ? SER A 89 LEU A 96 C 4 ALA A 75 ? HIS A 77 ? ALA A 78 HIS A 80 C 5 SER A 86 ? LEU A 93 ? SER A 89 LEU A 96 C 6 ALA A 195 ? SER A 205 ? ALA A 198 SER A 208 C 7 PHE A 208 ? LYS A 209 ? PHE A 211 LYS A 212 D 1 TYR B 14 ? THR B 15 ? TYR B 14 THR B 15 D 2 ARG B 6 ? LYS B 7 ? ARG B 6 LYS B 7 D 3 LYS B 28 ? VAL B 29 ? LYS B 28 VAL B 29 E 1 LYS C 31 ? LYS C 34 ? LYS C 32 LYS C 35 E 2 SER C 98 ? GLU C 103 ? SER C 99 GLU C 104 E 3 LEU C 50 ? ALA C 54 ? LEU C 51 ALA C 55 E 4 TYR C 77 ? VAL C 80 ? TYR C 78 VAL C 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 19 ? N LEU A 22 O LEU A 277 ? O LEU A 280 A 2 3 O LYS A 276 ? O LYS A 279 N TRP A 254 ? N TRP A 257 A 3 4 N ILE A 255 ? N ILE A 258 O MET A 290 ? O MET A 293 A 4 5 N ILE A 289 ? N ILE A 292 O VAL A 297 ? O VAL A 300 A 5 6 N LEU A 299 ? N LEU A 302 O LYS A 322 ? O LYS A 325 A 6 7 O ALA A 317 ? O ALA A 320 N LEU A 269 ? N LEU A 272 B 1 2 O GLN A 241 ? O GLN A 244 N VAL A 48 ? N VAL A 51 B 2 3 N LEU A 51 ? N LEU A 54 O LEU A 89 ? O LEU A 92 B 3 4 N SER A 86 ? N SER A 89 O ARG A 202 ? O ARG A 205 B 4 5 O HIS A 196 ? O HIS A 199 N HIS A 115 ? N HIS A 118 B 5 6 N ALA A 112 ? N ALA A 115 O PHE A 170 ? O PHE A 173 B 6 7 O LEU A 169 ? O LEU A 172 N GLU A 162 ? N GLU A 165 B 7 8 O ARG A 151 ? O ARG A 154 N GLN A 138 ? N GLN A 141 C 1 2 O ILE A 215 ? O ILE A 218 N ASP A 52 ? N ASP A 55 C 2 3 N LEU A 51 ? N LEU A 54 O LEU A 89 ? O LEU A 92 C 3 4 O ALA A 92 ? O ALA A 95 N GLY A 76 ? N GLY A 79 C 4 5 N GLY A 76 ? N GLY A 79 O ALA A 92 ? O ALA A 95 C 5 6 N SER A 86 ? N SER A 89 O ARG A 202 ? O ARG A 205 C 6 7 N SER A 205 ? N SER A 208 O PHE A 208 ? O PHE A 211 D 1 2 O THR B 15 ? O THR B 15 N ARG B 6 ? N ARG B 6 D 2 3 N LYS B 7 ? N LYS B 7 O LYS B 28 ? O LYS B 28 E 1 2 N ARG C 33 ? N ARG C 34 O ALA C 100 ? O ALA C 101 E 2 3 O VAL C 99 ? O VAL C 100 N ILE C 52 ? N ILE C 53 E 3 4 N ILE C 53 ? N ILE C 54 O ILE C 78 ? O ILE C 79 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE ZN B 61' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 CYS B 11 ? CYS B 11 . ? 1_555 ? 2 AC1 3 ARG B 13 ? ARG B 13 . ? 1_555 ? 3 AC1 3 VAL B 22 ? VAL B 22 . ? 1_555 ? # _database_PDB_matrix.entry_id 3LWO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LWO _atom_sites.fract_transf_matrix[1][1] 0.005419 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015949 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011719 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 4 ? ? ? A . n A 1 2 ALA 2 5 ? ? ? A . n A 1 3 ARG 3 6 ? ? ? A . n A 1 4 ASP 4 7 ? ? ? A . n A 1 5 GLU 5 8 ? ? ? A . n A 1 6 VAL 6 9 ? ? ? A . n A 1 7 ARG 7 10 ? ? ? A . n A 1 8 ARG 8 11 11 ARG ARG A . n A 1 9 ILE 9 12 12 ILE ILE A . n A 1 10 LEU 10 13 13 LEU LEU A . n A 1 11 PRO 11 14 14 PRO PRO A . n A 1 12 ALA 12 15 15 ALA ALA A . n A 1 13 ASP 13 16 16 ASP ASP A . n A 1 14 ILE 14 17 17 ILE ILE A . n A 1 15 LYS 15 18 18 LYS LYS A . n A 1 16 ARG 16 19 19 ARG ARG A . n A 1 17 GLU 17 20 20 GLU GLU A . n A 1 18 VAL 18 21 21 VAL VAL A . n A 1 19 LEU 19 22 22 LEU LEU A . n A 1 20 ILE 20 23 23 ILE ILE A . n A 1 21 LYS 21 24 24 LYS LYS A . n A 1 22 ASP 22 25 25 ASP ASP A . n A 1 23 GLU 23 26 26 GLU GLU A . n A 1 24 ASN 24 27 27 ASN ASN A . n A 1 25 ALA 25 28 28 ALA ALA A . n A 1 26 GLU 26 29 29 GLU GLU A . n A 1 27 THR 27 30 30 THR THR A . n A 1 28 ASN 28 31 31 ASN ASN A . n A 1 29 PRO 29 32 32 PRO PRO A . n A 1 30 ASP 30 33 33 ASP ASP A . n A 1 31 TRP 31 34 34 TRP TRP A . n A 1 32 GLY 32 35 35 GLY GLY A . n A 1 33 PHE 33 36 36 PHE PHE A . n A 1 34 PRO 34 37 37 PRO PRO A . n A 1 35 PRO 35 38 38 PRO PRO A . n A 1 36 GLU 36 39 39 GLU GLU A . n A 1 37 LYS 37 40 40 LYS LYS A . n A 1 38 ARG 38 41 41 ARG ARG A . n A 1 39 PRO 39 42 42 PRO PRO A . n A 1 40 ILE 40 43 43 ILE ILE A . n A 1 41 GLU 41 44 44 GLU GLU A . n A 1 42 MET 42 45 45 MET MET A . n A 1 43 HIS 43 46 46 HIS HIS A . n A 1 44 ILE 44 47 47 ILE ILE A . n A 1 45 GLN 45 48 48 GLN GLN A . n A 1 46 PHE 46 49 49 PHE PHE A . n A 1 47 GLY 47 50 50 GLY GLY A . n A 1 48 VAL 48 51 51 VAL VAL A . n A 1 49 ILE 49 52 52 ILE ILE A . n A 1 50 ASN 50 53 53 ASN ASN A . n A 1 51 LEU 51 54 54 LEU LEU A . n A 1 52 ASP 52 55 55 ASP ASP A . n A 1 53 LYS 53 56 56 LYS LYS A . n A 1 54 PRO 54 57 57 PRO PRO A . n A 1 55 PRO 55 58 58 PRO PRO A . n A 1 56 GLY 56 59 59 GLY GLY A . n A 1 57 PRO 57 60 60 PRO PRO A . n A 1 58 THR 58 61 61 THR THR A . n A 1 59 SER 59 62 62 SER SER A . n A 1 60 HIS 60 63 63 HIS HIS A . n A 1 61 GLU 61 64 64 GLU GLU A . n A 1 62 VAL 62 65 65 VAL VAL A . n A 1 63 VAL 63 66 66 VAL VAL A . n A 1 64 ALA 64 67 67 ALA ALA A . n A 1 65 TRP 65 68 68 TRP TRP A . n A 1 66 ILE 66 69 69 ILE ILE A . n A 1 67 LYS 67 70 70 LYS LYS A . n A 1 68 LYS 68 71 71 LYS LYS A . n A 1 69 ILE 69 72 72 ILE ILE A . n A 1 70 LEU 70 73 73 LEU LEU A . n A 1 71 ASN 71 74 74 ASN ASN A . n A 1 72 LEU 72 75 75 LEU LEU A . n A 1 73 GLU 73 76 76 GLU GLU A . n A 1 74 LYS 74 77 77 LYS LYS A . n A 1 75 ALA 75 78 78 ALA ALA A . n A 1 76 GLY 76 79 79 GLY GLY A . n A 1 77 HIS 77 80 80 HIS HIS A . n A 1 78 GLY 78 81 81 GLY GLY A . n A 1 79 GLY 79 82 82 GLY GLY A . n A 1 80 THR 80 83 83 THR THR A . n A 1 81 LEU 81 84 84 LEU LEU A . n A 1 82 ASP 82 85 85 ASP ASP A . n A 1 83 PRO 83 86 86 PRO PRO A . n A 1 84 LYS 84 87 87 LYS LYS A . n A 1 85 VAL 85 88 88 VAL VAL A . n A 1 86 SER 86 89 89 SER SER A . n A 1 87 GLY 87 90 90 GLY GLY A . n A 1 88 VAL 88 91 91 VAL VAL A . n A 1 89 LEU 89 92 92 LEU LEU A . n A 1 90 PRO 90 93 93 PRO PRO A . n A 1 91 VAL 91 94 94 VAL VAL A . n A 1 92 ALA 92 95 95 ALA ALA A . n A 1 93 LEU 93 96 96 LEU LEU A . n A 1 94 GLU 94 97 97 GLU GLU A . n A 1 95 LYS 95 98 98 LYS LYS A . n A 1 96 ALA 96 99 99 ALA ALA A . n A 1 97 THR 97 100 100 THR THR A . n A 1 98 ARG 98 101 101 ARG ARG A . n A 1 99 VAL 99 102 102 VAL VAL A . n A 1 100 VAL 100 103 103 VAL VAL A . n A 1 101 GLN 101 104 104 GLN GLN A . n A 1 102 ALA 102 105 105 ALA ALA A . n A 1 103 LEU 103 106 106 LEU LEU A . n A 1 104 LEU 104 107 107 LEU LEU A . n A 1 105 PRO 105 108 108 PRO PRO A . n A 1 106 ALA 106 109 109 ALA ALA A . n A 1 107 GLY 107 110 110 GLY GLY A . n A 1 108 LYS 108 111 111 LYS LYS A . n A 1 109 GLU 109 112 112 GLU GLU A . n A 1 110 TYR 110 113 113 TYR TYR A . n A 1 111 VAL 111 114 114 VAL VAL A . n A 1 112 ALA 112 115 115 ALA ALA A . n A 1 113 LEU 113 116 116 LEU LEU A . n A 1 114 MET 114 117 117 MET MET A . n A 1 115 HIS 115 118 118 HIS HIS A . n A 1 116 LEU 116 119 119 LEU LEU A . n A 1 117 HIS 117 120 120 HIS HIS A . n A 1 118 GLY 118 121 121 GLY GLY A . n A 1 119 ASP 119 122 122 ASP ASP A . n A 1 120 VAL 120 123 123 VAL VAL A . n A 1 121 PRO 121 124 124 PRO PRO A . n A 1 122 GLU 122 125 125 GLU GLU A . n A 1 123 ASP 123 126 126 ASP ASP A . n A 1 124 LYS 124 127 127 LYS LYS A . n A 1 125 ILE 125 128 128 ILE ILE A . n A 1 126 ILE 126 129 129 ILE ILE A . n A 1 127 GLN 127 130 130 GLN GLN A . n A 1 128 VAL 128 131 131 VAL VAL A . n A 1 129 MET 129 132 132 MET MET A . n A 1 130 LYS 130 133 133 LYS LYS A . n A 1 131 GLU 131 134 134 GLU GLU A . n A 1 132 PHE 132 135 135 PHE PHE A . n A 1 133 GLU 133 136 136 GLU GLU A . n A 1 134 GLY 134 137 137 GLY GLY A . n A 1 135 GLU 135 138 138 GLU GLU A . n A 1 136 ILE 136 139 139 ILE ILE A . n A 1 137 ILE 137 140 140 ILE ILE A . n A 1 138 GLN 138 141 141 GLN GLN A . n A 1 139 ARG 139 142 142 ARG ARG A . n A 1 140 PRO 140 143 ? ? ? A . n A 1 141 PRO 141 144 ? ? ? A . n A 1 142 LEU 142 145 ? ? ? A . n A 1 143 ARG 143 146 ? ? ? A . n A 1 144 SER 144 147 ? ? ? A . n A 1 145 ALA 145 148 ? ? ? A . n A 1 146 VAL 146 149 ? ? ? A . n A 1 147 LYS 147 150 ? ? ? A . n A 1 148 ARG 148 151 ? ? ? A . n A 1 149 ARG 149 152 ? ? ? A . n A 1 150 LEU 150 153 153 LEU LEU A . n A 1 151 ARG 151 154 154 ARG ARG A . n A 1 152 THR 152 155 155 THR THR A . n A 1 153 ARG 153 156 156 ARG ARG A . n A 1 154 LYS 154 157 157 LYS LYS A . n A 1 155 VAL 155 158 158 VAL VAL A . n A 1 156 TYR 156 159 159 TYR TYR A . n A 1 157 TYR 157 160 160 TYR TYR A . n A 1 158 ILE 158 161 161 ILE ILE A . n A 1 159 GLU 159 162 162 GLU GLU A . n A 1 160 VAL 160 163 163 VAL VAL A . n A 1 161 LEU 161 164 164 LEU LEU A . n A 1 162 GLU 162 165 165 GLU GLU A . n A 1 163 ILE 163 166 166 ILE ILE A . n A 1 164 GLU 164 167 167 GLU GLU A . n A 1 165 GLY 165 168 168 GLY GLY A . n A 1 166 ARG 166 169 169 ARG ARG A . n A 1 167 ASP 167 170 170 ASP ASP A . n A 1 168 VAL 168 171 171 VAL VAL A . n A 1 169 LEU 169 172 172 LEU LEU A . n A 1 170 PHE 170 173 173 PHE PHE A . n A 1 171 ARG 171 174 174 ARG ARG A . n A 1 172 VAL 172 175 175 VAL VAL A . n A 1 173 GLY 173 176 176 GLY GLY A . n A 1 174 VAL 174 177 177 VAL VAL A . n A 1 175 GLU 175 178 178 GLU GLU A . n A 1 176 ALA 176 179 179 ALA ALA A . n A 1 177 GLY 177 180 180 GLY GLY A . n A 1 178 THR 178 181 181 THR THR A . n A 1 179 TYR 179 182 182 TYR TYR A . n A 1 180 ILE 180 183 183 ILE ILE A . n A 1 181 ARG 181 184 184 ARG ARG A . n A 1 182 SER 182 185 185 SER SER A . n A 1 183 LEU 183 186 186 LEU LEU A . n A 1 184 ILE 184 187 187 ILE ILE A . n A 1 185 HIS 185 188 188 HIS HIS A . n A 1 186 HIS 186 189 189 HIS HIS A . n A 1 187 ILE 187 190 190 ILE ILE A . n A 1 188 GLY 188 191 191 GLY GLY A . n A 1 189 LEU 189 192 192 LEU LEU A . n A 1 190 ALA 190 193 193 ALA ALA A . n A 1 191 LEU 191 194 194 LEU LEU A . n A 1 192 GLY 192 195 195 GLY GLY A . n A 1 193 VAL 193 196 196 VAL VAL A . n A 1 194 GLY 194 197 197 GLY GLY A . n A 1 195 ALA 195 198 198 ALA ALA A . n A 1 196 HIS 196 199 199 HIS HIS A . n A 1 197 MET 197 200 200 MET MET A . n A 1 198 SER 198 201 201 SER SER A . n A 1 199 GLU 199 202 202 GLU GLU A . n A 1 200 LEU 200 203 203 LEU LEU A . n A 1 201 ARG 201 204 204 ARG ARG A . n A 1 202 ARG 202 205 205 ARG ARG A . n A 1 203 THR 203 206 206 THR THR A . n A 1 204 ARG 204 207 207 ARG ARG A . n A 1 205 SER 205 208 208 SER SER A . n A 1 206 GLY 206 209 209 GLY GLY A . n A 1 207 PRO 207 210 210 PRO PRO A . n A 1 208 PHE 208 211 211 PHE PHE A . n A 1 209 LYS 209 212 212 LYS LYS A . n A 1 210 GLU 210 213 213 GLU GLU A . n A 1 211 ASP 211 214 214 ASP ASP A . n A 1 212 GLU 212 215 215 GLU GLU A . n A 1 213 THR 213 216 216 THR THR A . n A 1 214 LEU 214 217 217 LEU LEU A . n A 1 215 ILE 215 218 218 ILE ILE A . n A 1 216 THR 216 219 219 THR THR A . n A 1 217 LEU 217 220 220 LEU LEU A . n A 1 218 HIS 218 221 221 HIS HIS A . n A 1 219 ASP 219 222 222 ASP ASP A . n A 1 220 LEU 220 223 223 LEU LEU A . n A 1 221 VAL 221 224 224 VAL VAL A . n A 1 222 ASP 222 225 225 ASP ASP A . n A 1 223 TYR 223 226 226 TYR TYR A . n A 1 224 TYR 224 227 227 TYR TYR A . n A 1 225 TYR 225 228 228 TYR TYR A . n A 1 226 PHE 226 229 229 PHE PHE A . n A 1 227 TRP 227 230 230 TRP TRP A . n A 1 228 LYS 228 231 231 LYS LYS A . n A 1 229 GLU 229 232 232 GLU GLU A . n A 1 230 ASP 230 233 233 ASP ASP A . n A 1 231 GLY 231 234 234 GLY GLY A . n A 1 232 ILE 232 235 235 ILE ILE A . n A 1 233 GLU 233 236 236 GLU GLU A . n A 1 234 GLU 234 237 237 GLU GLU A . n A 1 235 TYR 235 238 238 TYR TYR A . n A 1 236 PHE 236 239 239 PHE PHE A . n A 1 237 ARG 237 240 240 ARG ARG A . n A 1 238 LYS 238 241 241 LYS LYS A . n A 1 239 ALA 239 242 242 ALA ALA A . n A 1 240 ILE 240 243 243 ILE ILE A . n A 1 241 GLN 241 244 244 GLN GLN A . n A 1 242 PRO 242 245 245 PRO PRO A . n A 1 243 MET 243 246 246 MET MET A . n A 1 244 GLU 244 247 247 GLU GLU A . n A 1 245 LYS 245 248 248 LYS LYS A . n A 1 246 ALA 246 249 249 ALA ALA A . n A 1 247 VAL 247 250 250 VAL VAL A . n A 1 248 GLU 248 251 251 GLU GLU A . n A 1 249 HIS 249 252 252 HIS HIS A . n A 1 250 LEU 250 253 253 LEU LEU A . n A 1 251 PRO 251 254 254 PRO PRO A . n A 1 252 LYS 252 255 255 LYS LYS A . n A 1 253 VAL 253 256 256 VAL VAL A . n A 1 254 TRP 254 257 257 TRP TRP A . n A 1 255 ILE 255 258 258 ILE ILE A . n A 1 256 LYS 256 259 259 LYS LYS A . n A 1 257 ASP 257 260 260 ASP ASP A . n A 1 258 SER 258 261 261 SER SER A . n A 1 259 ALA 259 262 262 ALA ALA A . n A 1 260 VAL 260 263 263 VAL VAL A . n A 1 261 ALA 261 264 264 ALA ALA A . n A 1 262 ALA 262 265 265 ALA ALA A . n A 1 263 VAL 263 266 266 VAL VAL A . n A 1 264 THR 264 267 267 THR THR A . n A 1 265 HIS 265 268 268 HIS HIS A . n A 1 266 GLY 266 269 269 GLY GLY A . n A 1 267 ALA 267 270 270 ALA ALA A . n A 1 268 ASP 268 271 271 ASP ASP A . n A 1 269 LEU 269 272 272 LEU LEU A . n A 1 270 ALA 270 273 273 ALA ALA A . n A 1 271 VAL 271 274 274 VAL VAL A . n A 1 272 PRO 272 275 275 PRO PRO A . n A 1 273 GLY 273 276 276 GLY GLY A . n A 1 274 ILE 274 277 277 ILE ILE A . n A 1 275 ALA 275 278 278 ALA ALA A . n A 1 276 LYS 276 279 279 LYS LYS A . n A 1 277 LEU 277 280 280 LEU LEU A . n A 1 278 HIS 278 281 281 HIS HIS A . n A 1 279 ALA 279 282 282 ALA ALA A . n A 1 280 GLY 280 283 283 GLY GLY A . n A 1 281 ILE 281 284 284 ILE ILE A . n A 1 282 LYS 282 285 285 LYS LYS A . n A 1 283 ARG 283 286 286 ARG ARG A . n A 1 284 GLY 284 287 287 GLY GLY A . n A 1 285 ASP 285 288 288 ASP ASP A . n A 1 286 LEU 286 289 289 LEU LEU A . n A 1 287 VAL 287 290 290 VAL VAL A . n A 1 288 ALA 288 291 291 ALA ALA A . n A 1 289 ILE 289 292 292 ILE ILE A . n A 1 290 MET 290 293 293 MET MET A . n A 1 291 THR 291 294 294 THR THR A . n A 1 292 LEU 292 295 295 LEU LEU A . n A 1 293 LYS 293 296 296 LYS LYS A . n A 1 294 ASP 294 297 297 ASP ASP A . n A 1 295 GLU 295 298 298 GLU GLU A . n A 1 296 LEU 296 299 299 LEU LEU A . n A 1 297 VAL 297 300 300 VAL VAL A . n A 1 298 ALA 298 301 301 ALA ALA A . n A 1 299 LEU 299 302 302 LEU LEU A . n A 1 300 GLY 300 303 303 GLY GLY A . n A 1 301 LYS 301 304 304 LYS LYS A . n A 1 302 ALA 302 305 305 ALA ALA A . n A 1 303 MET 303 306 306 MET MET A . n A 1 304 MET 304 307 307 MET MET A . n A 1 305 THR 305 308 308 THR THR A . n A 1 306 SER 306 309 309 SER SER A . n A 1 307 GLN 307 310 310 GLN GLN A . n A 1 308 GLU 308 311 311 GLU GLU A . n A 1 309 MET 309 312 312 MET MET A . n A 1 310 LEU 310 313 313 LEU LEU A . n A 1 311 GLU 311 314 314 GLU GLU A . n A 1 312 LYS 312 315 315 LYS LYS A . n A 1 313 THR 313 316 316 THR THR A . n A 1 314 LYS 314 317 317 LYS LYS A . n A 1 315 GLY 315 318 318 GLY GLY A . n A 1 316 ILE 316 319 319 ILE ILE A . n A 1 317 ALA 317 320 320 ALA ALA A . n A 1 318 VAL 318 321 321 VAL VAL A . n A 1 319 ASP 319 322 322 ASP ASP A . n A 1 320 VAL 320 323 323 VAL VAL A . n A 1 321 GLU 321 324 324 GLU GLU A . n A 1 322 LYS 322 325 325 LYS LYS A . n A 1 323 VAL 323 326 326 VAL VAL A . n A 1 324 PHE 324 327 327 PHE PHE A . n A 1 325 MET 325 328 328 MET MET A . n A 1 326 PRO 326 329 329 PRO PRO A . n A 1 327 ARG 327 330 330 ARG ARG A . n A 1 328 ASP 328 331 331 ASP ASP A . n A 1 329 TRP 329 332 332 TRP TRP A . n A 1 330 TYR 330 333 333 TYR TYR A . n A 1 331 PRO 331 334 334 PRO PRO A . n A 1 332 LYS 332 335 335 LYS LYS A . n A 1 333 LEU 333 336 336 LEU LEU A . n A 1 334 TRP 334 337 337 TRP TRP A . n A 1 335 GLU 335 338 ? ? ? A . n A 1 336 LYS 336 339 ? ? ? A . n A 1 337 ARG 337 340 ? ? ? A . n A 1 338 ASP 338 341 ? ? ? A . n A 1 339 ARG 339 342 ? ? ? A . n A 1 340 SER 340 343 ? ? ? A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 ARG 2 2 ? ? ? B . n B 2 3 PHE 3 3 3 PHE PHE B . n B 2 4 ARG 4 4 4 ARG ARG B . n B 2 5 ILE 5 5 5 ILE ILE B . n B 2 6 ARG 6 6 6 ARG ARG B . n B 2 7 LYS 7 7 7 LYS LYS B . n B 2 8 CYS 8 8 8 CYS CYS B . n B 2 9 PRO 9 9 9 PRO PRO B . n B 2 10 LYS 10 10 10 LYS LYS B . n B 2 11 CYS 11 11 11 CYS CYS B . n B 2 12 GLY 12 12 12 GLY GLY B . n B 2 13 ARG 13 13 13 ARG ARG B . n B 2 14 TYR 14 14 14 TYR TYR B . n B 2 15 THR 15 15 15 THR THR B . n B 2 16 LEU 16 16 16 LEU LEU B . n B 2 17 LYS 17 17 17 LYS LYS B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 VAL 19 19 19 VAL VAL B . n B 2 20 CYS 20 20 20 CYS CYS B . n B 2 21 PRO 21 21 21 PRO PRO B . n B 2 22 VAL 22 22 22 VAL VAL B . n B 2 23 CYS 23 23 23 CYS CYS B . n B 2 24 GLY 24 24 24 GLY GLY B . n B 2 25 GLU 25 25 25 GLU GLU B . n B 2 26 LYS 26 26 26 LYS LYS B . n B 2 27 THR 27 27 27 THR THR B . n B 2 28 LYS 28 28 28 LYS LYS B . n B 2 29 VAL 29 29 29 VAL VAL B . n B 2 30 ALA 30 30 30 ALA ALA B . n B 2 31 HIS 31 31 31 HIS HIS B . n B 2 32 PRO 32 32 32 PRO PRO B . n B 2 33 PRO 33 33 33 PRO PRO B . n B 2 34 ARG 34 34 34 ARG ARG B . n B 2 35 PHE 35 35 35 PHE PHE B . n B 2 36 SER 36 36 36 SER SER B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 GLU 38 38 38 GLU GLU B . n B 2 39 ASP 39 39 39 ASP ASP B . n B 2 40 PRO 40 40 40 PRO PRO B . n B 2 41 TYR 41 41 41 TYR TYR B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 GLU 43 43 43 GLU GLU B . n B 2 44 TYR 44 44 44 TYR TYR B . n B 2 45 ARG 45 45 45 ARG ARG B . n B 2 46 ARG 46 46 46 ARG ARG B . n B 2 47 ARG 47 47 47 ARG ARG B . n B 2 48 TRP 48 48 48 TRP TRP B . n B 2 49 LYS 49 49 49 LYS LYS B . n B 2 50 ARG 50 50 50 ARG ARG B . n B 2 51 GLU 51 51 51 GLU GLU B . n B 2 52 VAL 52 52 52 VAL VAL B . n B 2 53 LEU 53 53 53 LEU LEU B . n B 2 54 GLY 54 54 54 GLY GLY B . n B 2 55 ILE 55 55 55 ILE ILE B . n B 2 56 GLY 56 56 ? ? ? B . n B 2 57 ARG 57 57 ? ? ? B . n B 2 58 LYS 58 58 ? ? ? B . n B 2 59 GLU 59 59 ? ? ? B . n B 2 60 LYS 60 60 ? ? ? B . n C 3 1 MET 1 2 ? ? ? C . n C 3 2 ALA 2 3 ? ? ? C . n C 3 3 LYS 3 4 4 LYS LYS C . n C 3 4 PRO 4 5 5 PRO PRO C . n C 3 5 SER 5 6 6 SER SER C . n C 3 6 TYR 6 7 7 TYR TYR C . n C 3 7 VAL 7 8 8 VAL VAL C . n C 3 8 LYS 8 9 9 LYS LYS C . n C 3 9 PHE 9 10 10 PHE PHE C . n C 3 10 GLU 10 11 11 GLU GLU C . n C 3 11 VAL 11 12 12 VAL VAL C . n C 3 12 PRO 12 13 13 PRO PRO C . n C 3 13 LYS 13 14 14 LYS LYS C . n C 3 14 GLU 14 15 15 GLU GLU C . n C 3 15 LEU 15 16 16 LEU LEU C . n C 3 16 ALA 16 17 17 ALA ALA C . n C 3 17 GLU 17 18 18 GLU GLU C . n C 3 18 LYS 18 19 19 LYS LYS C . n C 3 19 ALA 19 20 20 ALA ALA C . n C 3 20 LEU 20 21 21 LEU LEU C . n C 3 21 GLN 21 22 22 GLN GLN C . n C 3 22 ALA 22 23 23 ALA ALA C . n C 3 23 VAL 23 24 24 VAL VAL C . n C 3 24 GLU 24 25 25 GLU GLU C . n C 3 25 ILE 25 26 26 ILE ILE C . n C 3 26 ALA 26 27 27 ALA ALA C . n C 3 27 ARG 27 28 28 ARG ARG C . n C 3 28 ASP 28 29 29 ASP ASP C . n C 3 29 THR 29 30 30 THR THR C . n C 3 30 GLY 30 31 31 GLY GLY C . n C 3 31 LYS 31 32 32 LYS LYS C . n C 3 32 ILE 32 33 33 ILE ILE C . n C 3 33 ARG 33 34 34 ARG ARG C . n C 3 34 LYS 34 35 35 LYS LYS C . n C 3 35 GLY 35 36 36 GLY GLY C . n C 3 36 THR 36 37 37 THR THR C . n C 3 37 ASN 37 38 38 ASN ASN C . n C 3 38 GLU 38 39 39 GLU GLU C . n C 3 39 THR 39 40 40 THR THR C . n C 3 40 THR 40 41 41 THR THR C . n C 3 41 LYS 41 42 42 LYS LYS C . n C 3 42 ALA 42 43 43 ALA ALA C . n C 3 43 VAL 43 44 44 VAL VAL C . n C 3 44 GLU 44 45 45 GLU GLU C . n C 3 45 ARG 45 46 46 ARG ARG C . n C 3 46 GLY 46 47 47 GLY GLY C . n C 3 47 GLN 47 48 48 GLN GLN C . n C 3 48 ALA 48 49 49 ALA ALA C . n C 3 49 LYS 49 50 50 LYS LYS C . n C 3 50 LEU 50 51 51 LEU LEU C . n C 3 51 VAL 51 52 52 VAL VAL C . n C 3 52 ILE 52 53 53 ILE ILE C . n C 3 53 ILE 53 54 54 ILE ILE C . n C 3 54 ALA 54 55 55 ALA ALA C . n C 3 55 GLU 55 56 56 GLU GLU C . n C 3 56 ASP 56 57 57 ASP ASP C . n C 3 57 VAL 57 58 58 VAL VAL C . n C 3 58 ASP 58 59 59 ASP ASP C . n C 3 59 PRO 59 60 60 PRO PRO C . n C 3 60 GLU 60 61 61 GLU GLU C . n C 3 61 GLU 61 62 62 GLU GLU C . n C 3 62 ILE 62 63 63 ILE ILE C . n C 3 63 VAL 63 64 64 VAL VAL C . n C 3 64 ALA 64 65 65 ALA ALA C . n C 3 65 HIS 65 66 66 HIS HIS C . n C 3 66 LEU 66 67 67 LEU LEU C . n C 3 67 PRO 67 68 68 PRO PRO C . n C 3 68 PRO 68 69 69 PRO PRO C . n C 3 69 LEU 69 70 70 LEU LEU C . n C 3 70 CYS 70 71 71 CYS CYS C . n C 3 71 GLU 71 72 72 GLU GLU C . n C 3 72 GLU 72 73 73 GLU GLU C . n C 3 73 LYS 73 74 74 LYS LYS C . n C 3 74 GLU 74 75 75 GLU GLU C . n C 3 75 ILE 75 76 76 ILE ILE C . n C 3 76 PRO 76 77 77 PRO PRO C . n C 3 77 TYR 77 78 78 TYR TYR C . n C 3 78 ILE 78 79 79 ILE ILE C . n C 3 79 TYR 79 80 80 TYR TYR C . n C 3 80 VAL 80 81 81 VAL VAL C . n C 3 81 PRO 81 82 82 PRO PRO C . n C 3 82 SER 82 83 83 SER SER C . n C 3 83 LYS 83 84 84 LYS LYS C . n C 3 84 LYS 84 85 85 LYS LYS C . n C 3 85 GLU 85 86 86 GLU GLU C . n C 3 86 LEU 86 87 87 LEU LEU C . n C 3 87 GLY 87 88 88 GLY GLY C . n C 3 88 ALA 88 89 89 ALA ALA C . n C 3 89 ALA 89 90 90 ALA ALA C . n C 3 90 ALA 90 91 91 ALA ALA C . n C 3 91 GLY 91 92 92 GLY GLY C . n C 3 92 ILE 92 93 93 ILE ILE C . n C 3 93 GLU 93 94 94 GLU GLU C . n C 3 94 VAL 94 95 95 VAL VAL C . n C 3 95 ALA 95 96 96 ALA ALA C . n C 3 96 ALA 96 97 97 ALA ALA C . n C 3 97 ALA 97 98 98 ALA ALA C . n C 3 98 SER 98 99 99 SER SER C . n C 3 99 VAL 99 100 100 VAL VAL C . n C 3 100 ALA 100 101 101 ALA ALA C . n C 3 101 ILE 101 102 102 ILE ILE C . n C 3 102 ILE 102 103 103 ILE ILE C . n C 3 103 GLU 103 104 104 GLU GLU C . n C 3 104 PRO 104 105 105 PRO PRO C . n C 3 105 GLY 105 106 106 GLY GLY C . n C 3 106 LYS 106 107 107 LYS LYS C . n C 3 107 ALA 107 108 108 ALA ALA C . n C 3 108 ARG 108 109 109 ARG ARG C . n C 3 109 ASP 109 110 110 ASP ASP C . n C 3 110 LEU 110 111 111 LEU LEU C . n C 3 111 VAL 111 112 112 VAL VAL C . n C 3 112 GLU 112 113 113 GLU GLU C . n C 3 113 GLU 113 114 114 GLU GLU C . n C 3 114 ILE 114 115 115 ILE ILE C . n C 3 115 ALA 115 116 116 ALA ALA C . n C 3 116 MET 116 117 117 MET MET C . n C 3 117 LYS 117 118 118 LYS LYS C . n C 3 118 VAL 118 119 119 VAL VAL C . n C 3 119 LYS 119 120 120 LYS LYS C . n C 3 120 GLU 120 121 121 GLU GLU C . n C 3 121 LEU 121 122 122 LEU LEU C . n C 3 122 MET 122 123 123 MET MET C . n C 3 123 LYS 123 124 ? ? ? C . n D 4 1 G 1 1 1 G G D . n D 4 2 G 2 2 2 G G D . n D 4 3 G 3 3 3 G G D . n D 4 4 C 4 4 4 C C D . n D 4 5 C 5 5 5 C C D . n D 4 6 A 6 6 6 A A D . n D 4 7 C 7 7 7 C C D . n D 4 8 G 8 8 8 G G D . n D 4 9 G 9 9 9 G G D . n D 4 10 A 10 10 10 A A D . n D 4 11 A 11 11 11 A A D . n D 4 12 A 12 12 12 A A D . n D 4 13 C 13 13 13 C C D . n D 4 14 C 14 14 14 C C D . n D 4 15 G 15 15 15 G G D . n D 4 16 C 16 16 16 C C D . n D 4 17 G 17 17 17 G G D . n D 4 18 C 18 18 18 C C D . n D 4 19 G 19 19 19 G G D . n D 4 20 C 20 20 20 C C D . n D 4 21 G 21 21 21 G G D . n D 4 22 G 22 22 22 G G D . n D 4 23 U 23 23 23 U U D . n D 4 24 G 24 24 24 G G D . n D 4 25 A 25 25 25 A A D . n D 4 26 U 26 26 26 U U D . n D 4 27 C 27 27 27 C C D . n D 4 28 A 28 28 28 A A D . n D 4 29 A 29 29 29 A A D . n D 4 30 U 30 30 30 U U D . n D 4 31 G 31 31 31 G G D . n D 4 32 A 32 32 32 A A D . n D 4 33 G 33 33 33 G G D . n D 4 34 C 34 34 34 C C D . n D 4 35 C 35 35 35 C C D . n D 4 36 G 36 36 36 G G D . n D 4 37 C 37 37 37 C C D . n D 4 38 G 38 38 38 G G D . n D 4 39 U 39 39 39 U U D . n D 4 40 U 40 40 40 U U D . n D 4 41 C 41 41 41 C C D . n D 4 42 G 42 42 42 G G D . n D 4 43 C 43 43 43 C C D . n D 4 44 U 44 44 44 U U D . n D 4 45 C 45 45 45 C C D . n D 4 46 C 46 46 46 C C D . n D 4 47 C 47 47 47 C C D . n D 4 48 G 48 48 48 G G D . n D 4 49 U 49 49 49 U U D . n D 4 50 G 50 50 50 G G D . n D 4 51 G 51 51 51 G G D . n D 4 52 C 52 52 52 C C D . n D 4 53 C 53 53 53 C C D . n D 4 54 C 54 54 54 C C D . n D 4 55 A 55 55 55 A A D . n D 4 56 C 56 56 56 C C D . n D 4 57 A 57 57 57 A A D . n D 4 58 A 58 58 58 A A D . n E 5 1 G 1 5 5 G G E . n E 5 2 A 2 6 6 A A E . n E 5 3 G 3 7 7 G G E . n E 5 4 C 4 8 8 C C E . n E 5 5 G 5 9 9 G G E . n E 5 6 5BU 6 10 10 5BU 5BU E . n E 5 7 G 7 11 11 G G E . n E 5 8 C 8 12 12 C C E . n E 5 9 G 9 13 13 G G E . n E 5 10 G 10 14 14 G G E . n E 5 11 U 11 15 15 U U E . n E 5 12 U 12 16 16 U U E . n E 5 13 U 13 17 17 U U E . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id E _pdbx_struct_mod_residue.label_comp_id 5BU _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id E _pdbx_struct_mod_residue.auth_comp_id 5BU _pdbx_struct_mod_residue.auth_seq_id 10 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id U _pdbx_struct_mod_residue.details "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11860 ? 1 MORE -106 ? 1 'SSA (A^2)' 29880 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-14 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 37.5602 _pdbx_refine_tls.origin_y 7.6629 _pdbx_refine_tls.origin_z 21.4601 _pdbx_refine_tls.T[1][1] 0.4159 _pdbx_refine_tls.T[2][2] 0.5575 _pdbx_refine_tls.T[3][3] 0.4601 _pdbx_refine_tls.T[1][2] 0.1244 _pdbx_refine_tls.T[1][3] 0.0594 _pdbx_refine_tls.T[2][3] 0.0262 _pdbx_refine_tls.L[1][1] 1.5932 _pdbx_refine_tls.L[2][2] 1.3041 _pdbx_refine_tls.L[3][3] 0.2214 _pdbx_refine_tls.L[1][2] -0.4483 _pdbx_refine_tls.L[1][3] -0.3974 _pdbx_refine_tls.L[2][3] 0.1709 _pdbx_refine_tls.S[1][1] -0.1565 _pdbx_refine_tls.S[1][2] -0.5583 _pdbx_refine_tls.S[1][3] -0.0911 _pdbx_refine_tls.S[2][1] -0.1255 _pdbx_refine_tls.S[2][2] 0.2399 _pdbx_refine_tls.S[2][3] 0.1491 _pdbx_refine_tls.S[3][1] -0.0535 _pdbx_refine_tls.S[3][2] 0.1727 _pdbx_refine_tls.S[3][3] -0.0563 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA B CYS 8 ? ? CB B CYS 8 ? ? SG B CYS 8 ? ? 121.49 114.20 7.29 1.10 N 2 1 CA B CYS 20 ? ? CB B CYS 20 ? ? SG B CYS 20 ? ? 122.33 114.20 8.13 1.10 N 3 1 C C VAL 12 ? ? N C PRO 13 ? ? CA C PRO 13 ? ? 128.47 119.30 9.17 1.50 Y 4 1 "C3'" D G 24 ? ? "O3'" D G 24 ? ? P D A 25 ? ? 127.87 119.70 8.17 1.20 Y 5 1 "C3'" D G 33 ? ? "C2'" D G 33 ? ? "C1'" D G 33 ? ? 106.53 101.50 5.03 0.80 N 6 1 "C3'" D G 33 ? ? "O3'" D G 33 ? ? P D C 34 ? ? 111.97 119.70 -7.73 1.20 Y 7 1 N1 D U 40 ? ? "C1'" D U 40 ? ? "C2'" D U 40 ? ? 122.56 114.00 8.56 1.30 N 8 1 "C3'" D U 40 ? ? "O3'" D U 40 ? ? P D C 41 ? ? 133.90 119.70 14.20 1.20 Y 9 1 N1 D C 41 ? ? "C1'" D C 41 ? ? "C2'" D C 41 ? ? 101.56 112.00 -10.44 1.10 N 10 1 N1 D C 56 ? ? "C1'" D C 56 ? ? "C2'" D C 56 ? ? 122.07 114.00 8.07 1.30 N 11 1 "C3'" D C 56 ? ? "O3'" D C 56 ? ? P D A 57 ? ? 130.26 119.70 10.56 1.20 Y 12 1 "C3'" E G 9 ? ? "O3'" E G 9 ? ? P E 5BU 10 ? ? 129.84 119.70 10.14 1.20 Y 13 1 N1 E C 12 ? ? "C1'" E C 12 ? ? "C2'" E C 12 ? ? 102.22 112.00 -9.78 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 28 ? ? -26.61 124.62 2 1 GLU A 39 ? ? -93.55 51.01 3 1 LYS A 40 ? ? -160.43 13.98 4 1 ALA A 78 ? ? -171.89 122.86 5 1 GLU A 97 ? ? 40.51 -111.84 6 1 VAL A 103 ? ? -49.24 -17.43 7 1 LEU A 106 ? ? -94.23 -64.30 8 1 ASP A 214 ? ? -145.77 -159.79 9 1 GLU A 237 ? ? -12.65 -75.64 10 1 PRO A 275 ? ? -53.46 -8.56 11 1 LYS A 335 ? ? -68.49 81.13 12 1 CYS B 20 ? ? -39.33 118.26 13 1 VAL B 22 ? ? -99.84 -61.60 14 1 ASP B 39 ? ? 27.12 68.30 15 1 LEU C 122 ? ? -75.91 20.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 4 ? A MET 1 2 1 Y 1 A ALA 5 ? A ALA 2 3 1 Y 1 A ARG 6 ? A ARG 3 4 1 Y 1 A ASP 7 ? A ASP 4 5 1 Y 1 A GLU 8 ? A GLU 5 6 1 Y 1 A VAL 9 ? A VAL 6 7 1 Y 1 A ARG 10 ? A ARG 7 8 1 Y 1 A PRO 143 ? A PRO 140 9 1 Y 1 A PRO 144 ? A PRO 141 10 1 Y 1 A LEU 145 ? A LEU 142 11 1 Y 1 A ARG 146 ? A ARG 143 12 1 Y 1 A SER 147 ? A SER 144 13 1 Y 1 A ALA 148 ? A ALA 145 14 1 Y 1 A VAL 149 ? A VAL 146 15 1 Y 1 A LYS 150 ? A LYS 147 16 1 Y 1 A ARG 151 ? A ARG 148 17 1 Y 1 A ARG 152 ? A ARG 149 18 1 Y 1 A GLU 338 ? A GLU 335 19 1 Y 1 A LYS 339 ? A LYS 336 20 1 Y 1 A ARG 340 ? A ARG 337 21 1 Y 1 A ASP 341 ? A ASP 338 22 1 Y 1 A ARG 342 ? A ARG 339 23 1 Y 1 A SER 343 ? A SER 340 24 1 Y 1 B MET 1 ? B MET 1 25 1 Y 1 B ARG 2 ? B ARG 2 26 1 Y 1 B GLY 56 ? B GLY 56 27 1 Y 1 B ARG 57 ? B ARG 57 28 1 Y 1 B LYS 58 ? B LYS 58 29 1 Y 1 B GLU 59 ? B GLU 59 30 1 Y 1 B LYS 60 ? B LYS 60 31 1 Y 1 C MET 2 ? C MET 1 32 1 Y 1 C ALA 3 ? C ALA 2 33 1 Y 1 C LYS 124 ? C LYS 123 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3LWO 'double helix' 3LWO 'a-form double helix' 3LWO 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 D G 1 1_555 D C 54 1_555 0.114 -0.018 0.178 -0.666 -11.422 -4.522 1 D_G1:C54_D D 1 ? D 54 ? 19 1 1 D G 2 1_555 D C 53 1_555 -0.029 -0.102 0.167 2.850 -13.350 -3.626 2 D_G2:C53_D D 2 ? D 53 ? 19 1 1 D G 3 1_555 D C 52 1_555 -0.081 0.072 0.385 10.523 -12.162 -1.681 3 D_G3:C52_D D 3 ? D 52 ? 19 1 1 D C 4 1_555 D G 51 1_555 0.518 -0.111 0.281 6.378 -15.550 -1.298 4 D_C4:G51_D D 4 ? D 51 ? 19 1 1 D C 5 1_555 D G 50 1_555 -0.371 0.057 0.128 6.464 -12.489 2.487 5 D_C5:G50_D D 5 ? D 50 ? 19 1 1 D A 6 1_555 D U 49 1_555 -0.158 0.201 -0.118 -3.114 -15.633 5.959 6 D_A6:U49_D D 6 ? D 49 ? 20 1 1 D C 7 1_555 D G 48 1_555 0.440 -0.125 -0.232 9.077 -14.185 -6.016 7 D_C7:G48_D D 7 ? D 48 ? 19 1 1 D G 8 1_555 D C 47 1_555 -0.082 0.093 -0.003 -4.442 -16.038 7.014 8 D_G8:C47_D D 8 ? D 47 ? 19 1 1 D G 9 1_555 D C 46 1_555 0.056 -0.274 -0.262 -4.444 -12.727 -3.993 9 D_G9:C46_D D 9 ? D 46 ? 19 1 1 E G 1 1_555 D C 45 1_555 -0.241 -0.134 0.239 0.285 -12.836 -3.425 10 E_G5:C45_D E 5 ? D 45 ? 19 1 1 E A 2 1_555 D U 44 1_555 -0.447 -0.221 0.321 4.785 -13.177 -0.393 11 E_A6:U44_D E 6 ? D 44 ? 20 1 1 E G 3 1_555 D C 43 1_555 -0.240 -0.231 0.176 -5.484 -12.925 -1.482 12 E_G7:C43_D E 7 ? D 43 ? 19 1 1 E C 4 1_555 D G 42 1_555 0.244 -0.077 0.412 0.115 -11.830 0.200 13 E_C8:G42_D E 8 ? D 42 ? 19 1 1 E G 5 1_555 D C 41 1_555 0.073 0.092 0.617 28.746 11.861 0.167 14 E_G9:C41_D E 9 ? D 41 ? 19 1 1 D A 10 1_555 E U 13 1_555 0.561 0.178 -0.057 9.064 50.519 -7.393 15 D_A10:U17_E D 10 ? E 17 ? 20 1 1 D A 11 1_555 E U 12 1_555 -0.665 0.185 -0.741 -9.666 -7.178 -14.835 16 D_A11:U16_E D 11 ? E 16 ? 20 1 1 D A 12 1_555 E U 11 1_555 0.345 -0.264 0.431 6.962 -21.162 -6.550 17 D_A12:U15_E D 12 ? E 15 ? 20 1 1 D C 13 1_555 E G 10 1_555 -0.834 0.073 -0.350 11.751 -20.775 -6.842 18 D_C13:G14_E D 13 ? E 14 ? 19 1 1 D C 14 1_555 E G 9 1_555 0.582 -0.038 0.076 -1.927 -12.259 8.210 19 D_C14:G13_E D 14 ? E 13 ? 19 1 1 D G 15 1_555 E C 8 1_555 -0.450 0.110 -0.473 -22.382 -8.534 -4.577 20 D_G15:C12_E D 15 ? E 12 ? 19 1 1 D C 16 1_555 D U 40 1_555 1.694 1.785 0.087 -14.576 22.572 -75.342 21 D_C16:U40_D D 16 ? D 40 ? ? ? 1 D G 17 1_555 D U 39 1_555 -1.912 -0.390 -0.098 -5.852 -16.127 -2.184 22 D_G17:U39_D D 17 ? D 39 ? 28 1 1 D C 18 1_555 D G 38 1_555 0.064 -0.329 0.311 6.735 -21.365 -1.529 23 D_C18:G38_D D 18 ? D 38 ? 19 1 1 D G 19 1_555 D C 37 1_555 0.342 -0.176 0.065 -1.948 -16.639 -5.561 24 D_G19:C37_D D 19 ? D 37 ? 19 1 1 D C 20 1_555 D G 36 1_555 0.475 -0.134 -0.541 16.095 -17.541 2.303 25 D_C20:G36_D D 20 ? D 36 ? 19 1 1 D G 21 1_555 D C 35 1_555 -0.199 0.017 0.479 5.469 -8.936 -2.251 26 D_G21:C35_D D 21 ? D 35 ? 19 1 1 D G 22 1_555 D C 34 1_555 0.723 0.460 -0.505 -13.417 -13.580 10.305 27 D_G22:C34_D D 22 ? D 34 ? ? 1 1 D U 23 1_555 D G 33 1_555 2.568 -0.544 -0.230 -9.062 -0.457 9.162 28 D_U23:G33_D D 23 ? D 33 ? 28 1 1 D G 24 1_555 D A 32 1_555 6.963 -5.017 0.376 21.816 5.929 1.554 29 D_G24:A32_D D 24 ? D 32 ? ? 10 1 D A 25 1_555 D G 31 1_555 -6.794 -4.866 0.389 -30.645 14.926 3.558 30 D_A25:G31_D D 25 ? D 31 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 D G 1 1_555 D C 54 1_555 D G 2 1_555 D C 53 1_555 -0.282 -1.669 3.162 -0.667 2.931 35.707 -3.111 0.368 3.025 4.769 1.085 35.829 1 DD_G1G2:C53C54_DD D 1 ? D 54 ? D 2 ? D 53 ? 1 D G 2 1_555 D C 53 1_555 D G 3 1_555 D C 52 1_555 -0.352 -1.255 2.929 -1.658 4.326 33.156 -2.803 0.373 2.762 7.535 2.888 33.470 2 DD_G2G3:C52C53_DD D 2 ? D 53 ? D 3 ? D 52 ? 1 D G 3 1_555 D C 52 1_555 D C 4 1_555 D G 51 1_555 0.324 -1.575 3.294 1.442 6.530 35.816 -3.397 -0.324 2.981 10.505 -2.320 36.415 3 DD_G3C4:G51C52_DD D 3 ? D 52 ? D 4 ? D 51 ? 1 D C 4 1_555 D G 51 1_555 D C 5 1_555 D G 50 1_555 0.260 -1.886 3.082 0.566 3.347 30.755 -4.127 -0.388 2.870 6.287 -1.064 30.937 4 DD_C4C5:G50G51_DD D 4 ? D 51 ? D 5 ? D 50 ? 1 D C 5 1_555 D G 50 1_555 D A 6 1_555 D U 49 1_555 -0.258 -1.452 3.355 1.956 11.937 30.951 -4.439 0.762 2.611 21.372 -3.503 33.177 5 DD_C5A6:U49G50_DD D 5 ? D 50 ? D 6 ? D 49 ? 1 D A 6 1_555 D U 49 1_555 D C 7 1_555 D G 48 1_555 -0.050 -1.327 2.994 0.769 3.464 36.828 -2.510 0.172 2.860 5.468 -1.214 36.993 6 DD_A6C7:G48U49_DD D 6 ? D 49 ? D 7 ? D 48 ? 1 D C 7 1_555 D G 48 1_555 D G 8 1_555 D C 47 1_555 0.779 -1.798 3.533 2.432 17.303 29.258 -5.703 -0.965 2.213 31.014 -4.358 33.981 7 DD_C7G8:C47G48_DD D 7 ? D 48 ? D 8 ? D 47 ? 1 D G 8 1_555 D C 47 1_555 D G 9 1_555 D C 46 1_555 -0.353 -1.714 3.251 3.407 15.580 31.004 -4.943 1.045 2.125 27.021 -5.910 34.776 8 DD_G8G9:C46C47_DD D 8 ? D 47 ? D 9 ? D 46 ? 1 D G 9 1_555 D C 46 1_555 E G 1 1_555 D C 45 1_555 -1.622 -1.442 3.176 -4.825 6.382 41.912 -2.605 1.761 3.093 8.825 6.673 42.635 9 DE_G9G5:C45C46_DD D 9 ? D 46 ? E 5 ? D 45 ? 1 E G 1 1_555 D C 45 1_555 E A 2 1_555 D U 44 1_555 -0.312 -1.605 3.200 3.824 1.932 37.948 -2.688 0.941 3.073 2.960 -5.857 38.180 10 EE_G5A6:U44C45_DD E 5 ? D 45 ? E 6 ? D 44 ? 1 E A 2 1_555 D U 44 1_555 E G 3 1_555 D C 43 1_555 0.559 -2.028 3.368 4.296 10.687 31.519 -5.178 -0.303 2.613 18.902 -7.599 33.507 11 EE_A6G7:C43U44_DD E 6 ? D 44 ? E 7 ? D 43 ? 1 E G 3 1_555 D C 43 1_555 E C 4 1_555 D G 42 1_555 0.394 -1.939 3.101 1.541 0.021 35.836 -3.152 -0.430 3.114 0.034 -2.503 35.868 12 EE_G7C8:G42C43_DD E 7 ? D 43 ? E 8 ? D 42 ? 1 E C 4 1_555 D G 42 1_555 E G 5 1_555 D C 41 1_555 -0.884 -1.929 2.337 -3.487 10.170 15.551 -8.913 1.655 1.057 32.937 11.293 18.886 13 EE_C8G9:C41G42_DD E 8 ? D 42 ? E 9 ? D 41 ? 1 D A 10 1_555 E U 13 1_555 D A 11 1_555 E U 12 1_555 1.247 -1.594 4.519 5.427 43.536 34.553 -4.880 -0.949 1.794 53.184 -6.630 55.313 14 DD_A10A11:U16U17_EE D 10 ? E 17 ? D 11 ? E 16 ? 1 D A 11 1_555 E U 12 1_555 D A 12 1_555 E U 11 1_555 0.112 -1.274 2.955 -7.915 0.070 35.824 -2.034 -1.154 2.864 0.112 12.678 36.660 15 DD_A11A12:U15U16_EE D 11 ? E 16 ? D 12 ? E 15 ? 1 D A 12 1_555 E U 11 1_555 D C 13 1_555 E G 10 1_555 -0.047 -2.166 2.942 4.947 1.861 25.879 -5.177 1.256 2.725 4.101 -10.901 26.405 16 DD_A12C13:G14U15_EE D 12 ? E 15 ? D 13 ? E 14 ? 1 D C 13 1_555 E G 10 1_555 D C 14 1_555 E G 9 1_555 1.286 -2.178 3.656 -0.637 9.414 37.253 -4.530 -2.038 3.016 14.454 0.978 38.388 17 DD_C13C14:G13G14_EE D 13 ? E 14 ? D 14 ? E 13 ? 1 D C 14 1_555 E G 9 1_555 D G 15 1_555 E C 8 1_555 -0.162 -2.136 3.798 1.988 8.016 29.308 -5.796 0.737 3.101 15.460 -3.834 30.424 18 DD_C14G15:C12G13_EE D 14 ? E 13 ? D 15 ? E 12 ? 1 D G 15 1_555 E C 8 1_555 D C 16 1_555 D U 40 1_555 -1.730 -1.996 3.201 3.247 -0.327 64.250 -1.862 1.759 3.129 -0.308 -3.051 64.324 19 DD_G15C16:U40C12_DE D 15 ? E 12 ? D 16 ? D 40 ? 1 D C 16 1_555 D U 40 1_555 D G 17 1_555 D U 39 1_555 5.173 -1.129 3.730 -4.351 25.352 23.971 -5.288 -9.181 1.136 47.025 8.071 35.022 20 DD_C16G17:U39U40_DD D 16 ? D 40 ? D 17 ? D 39 ? 1 D G 17 1_555 D U 39 1_555 D C 18 1_555 D G 38 1_555 0.157 -1.274 2.925 -2.896 2.959 37.139 -2.331 -0.581 2.799 4.628 4.529 37.361 21 DD_G17C18:G38U39_DD D 17 ? D 39 ? D 18 ? D 38 ? 1 D C 18 1_555 D G 38 1_555 D G 19 1_555 D C 37 1_555 0.269 -1.644 3.488 3.080 2.710 28.539 -3.935 0.181 3.331 5.462 -6.208 28.826 22 DD_C18G19:C37G38_DD D 18 ? D 38 ? D 19 ? D 37 ? 1 D G 19 1_555 D C 37 1_555 D C 20 1_555 D G 36 1_555 -0.238 -1.258 2.797 5.808 1.303 38.324 -2.030 0.958 2.691 1.970 -8.782 38.767 23 DD_G19C20:G36C37_DD D 19 ? D 37 ? D 20 ? D 36 ? 1 D C 20 1_555 D G 36 1_555 D G 21 1_555 D C 35 1_555 -0.186 -1.492 3.358 -4.903 13.398 29.952 -4.744 -0.452 2.483 24.267 8.881 33.106 24 DD_C20G21:C35G36_DD D 20 ? D 36 ? D 21 ? D 35 ? 1 D G 21 1_555 D C 35 1_555 D G 22 1_555 D C 34 1_555 0.618 -1.667 3.669 9.724 21.479 33.132 -4.852 0.212 2.309 32.981 -14.932 40.473 25 DD_G21G22:C34C35_DD D 21 ? D 35 ? D 22 ? D 34 ? 1 D G 22 1_555 D C 34 1_555 D U 23 1_555 D G 33 1_555 0.503 -0.924 3.162 0.215 12.110 34.433 -3.029 -0.777 2.698 19.717 -0.350 36.440 26 DD_G22U23:G33C34_DD D 22 ? D 34 ? D 23 ? D 33 ? 1 D U 23 1_555 D G 33 1_555 D G 24 1_555 D A 32 1_555 0.523 0.278 2.670 5.877 10.581 50.072 -0.284 -0.267 2.714 12.296 -6.829 51.422 27 DD_U23G24:A32G33_DD D 23 ? D 33 ? D 24 ? D 32 ? 1 D G 24 1_555 D A 32 1_555 D A 25 1_555 D G 31 1_555 0.683 -2.479 4.612 2.327 -3.121 -18.577 9.679 3.680 4.028 9.533 7.106 -18.977 28 DD_G24A25:G31A32_DD D 24 ? D 32 ? D 25 ? D 31 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 6 'ZINC ION' ZN 7 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN 1 61 1 ZN ZN B . G 7 HOH 1 1 1 HOH HOH A . G 7 HOH 2 2 2 HOH HOH A . H 7 HOH 1 59 3 HOH HOH D . #