HEADER LYASE 24-FEB-10 3LWZ TITLE 1.65 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF TYPE II 3-DEHYDROQUINATE TITLE 2 DEHYDRATASE (AROQ) FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: 3-DEHYDROQUINATE DEHYDRATASE (AROQ); COMPND 5 SYNONYM: 3-DEHYDROQUINASE, TYPE II DHQASE; COMPND 6 EC: 4.2.1.10; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: AROQ, Y0207, YPO3660, YP_3886; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TYPE II 3-DEHYDROQUINATE DEHYDRATASE, AROQ, IDP90771, AMINO-ACID KEYWDS 2 BIOSYNTHESIS, AROMATIC AMINO ACID BIOSYNTHESIS, LYASE, STRUCTURAL KEYWDS 3 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 4 CSGID EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,S.H.LIGHT,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,L.PAPAZISI, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 06-SEP-23 3LWZ 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3LWZ 1 REMARK REVDAT 1 09-MAR-10 3LWZ 0 JRNL AUTH G.MINASOV,S.H.LIGHT,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR, JRNL AUTH 2 L.PAPAZISI,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.65 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF TYPE II JRNL TITL 2 3-DEHYDROQUINATE DEHYDRATASE (AROQ) FROM YERSINIA PESTIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 75607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5501 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 272 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 682 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.57000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.592 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5143 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3378 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7006 ; 1.319 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8270 ; 0.869 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 4.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;35.420 ;24.050 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 818 ;11.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;10.323 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 791 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5887 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1036 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3168 ; 1.232 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1278 ; 0.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5134 ; 2.097 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1975 ; 2.791 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1872 ; 4.336 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 5.3 MG/ML, 0.5M REMARK 280 SODIUM CHLORIDE, 0.01M TRIS-HCL PH 8.3; SCREEN SOLUTION: ANL-2, REMARK 280 D1, 0.17M SODIM ACETATE, 0.085M TRIS HCL PH 8.5, 25.5% PEG 4000, REMARK 280 15% GLYCEROL., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.29350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.15021 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.16667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 45.29350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 26.15021 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.16667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 45.29350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 26.15021 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.16667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.30043 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 144.33333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.30043 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 144.33333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.30043 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 144.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 43860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -90.58700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -45.29350 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -78.45064 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 150 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 SER B 149 REMARK 465 ASN B 150 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 SER C 149 REMARK 465 ASN C 150 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ASN D 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 -7.92 74.64 REMARK 500 GLU A 22 60.92 37.26 REMARK 500 ALA A 79 -133.92 47.40 REMARK 500 ARG A 110 -148.62 -119.11 REMARK 500 ASN B 14 -6.03 70.65 REMARK 500 GLU B 22 65.33 28.38 REMARK 500 ALA B 79 -135.93 50.39 REMARK 500 ARG B 110 -145.58 -117.07 REMARK 500 ASN C 14 -7.96 71.59 REMARK 500 GLU C 22 64.17 33.93 REMARK 500 ALA C 79 -136.47 50.49 REMARK 500 ARG C 110 -150.93 -115.42 REMARK 500 ASN D 14 -7.77 74.31 REMARK 500 ALA D 79 -134.11 47.63 REMARK 500 ARG D 110 -153.85 -118.79 REMARK 500 ARG D 110 -137.81 -120.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 368 REMARK 615 HOH A 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME C 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME D 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90771 RELATED DB: TARGETDB DBREF 3LWZ A 1 150 UNP Q8ZAX1 AROQ_YERPE 1 150 DBREF 3LWZ B 1 150 UNP Q8ZAX1 AROQ_YERPE 1 150 DBREF 3LWZ C 1 150 UNP Q8ZAX1 AROQ_YERPE 1 150 DBREF 3LWZ D 1 150 UNP Q8ZAX1 AROQ_YERPE 1 150 SEQADV 3LWZ SER A -2 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ ASN A -1 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ ALA A 0 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ SER B -2 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ ASN B -1 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ ALA B 0 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ SER C -2 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ ASN C -1 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ ALA C 0 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ SER D -2 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ ASN D -1 UNP Q8ZAX1 EXPRESSION TAG SEQADV 3LWZ ALA D 0 UNP Q8ZAX1 EXPRESSION TAG SEQRES 1 A 153 SER ASN ALA MET SER ASP LYS PHE HIS ILE LEU LEU LEU SEQRES 2 A 153 ASN GLY PRO ASN LEU ASN LEU LEU GLY THR ARG GLU PRO SEQRES 3 A 153 GLU LYS TYR GLY TYR THR THR LEU ALA GLU ILE VAL SER SEQRES 4 A 153 GLN LEU GLU ILE GLN ALA GLN GLY MET ASP VAL ALA LEU SEQRES 5 A 153 SER HIS LEU GLN SER ASN ALA GLU HIS ALA LEU ILE ASP SEQRES 6 A 153 SER ILE HIS GLN ALA ARG GLY ASN THR ASP PHE ILE LEU SEQRES 7 A 153 ILE ASN PRO ALA ALA PHE THR HIS THR SER VAL ALA LEU SEQRES 8 A 153 ARG ASP ALA LEU LEU GLY VAL GLN ILE PRO PHE ILE GLU SEQRES 9 A 153 ILE HIS LEU SER ASN VAL HIS ALA ARG GLU PRO PHE ARG SEQRES 10 A 153 HIS HIS SER TYR LEU SER ASP ILE ALA VAL GLY VAL ILE SEQRES 11 A 153 CYS GLY LEU GLY ALA ASP GLY TYR ASN PHE ALA LEU GLN SEQRES 12 A 153 ALA ALA VAL ASN ARG LEU SER LYS SER ASN SEQRES 1 B 153 SER ASN ALA MET SER ASP LYS PHE HIS ILE LEU LEU LEU SEQRES 2 B 153 ASN GLY PRO ASN LEU ASN LEU LEU GLY THR ARG GLU PRO SEQRES 3 B 153 GLU LYS TYR GLY TYR THR THR LEU ALA GLU ILE VAL SER SEQRES 4 B 153 GLN LEU GLU ILE GLN ALA GLN GLY MET ASP VAL ALA LEU SEQRES 5 B 153 SER HIS LEU GLN SER ASN ALA GLU HIS ALA LEU ILE ASP SEQRES 6 B 153 SER ILE HIS GLN ALA ARG GLY ASN THR ASP PHE ILE LEU SEQRES 7 B 153 ILE ASN PRO ALA ALA PHE THR HIS THR SER VAL ALA LEU SEQRES 8 B 153 ARG ASP ALA LEU LEU GLY VAL GLN ILE PRO PHE ILE GLU SEQRES 9 B 153 ILE HIS LEU SER ASN VAL HIS ALA ARG GLU PRO PHE ARG SEQRES 10 B 153 HIS HIS SER TYR LEU SER ASP ILE ALA VAL GLY VAL ILE SEQRES 11 B 153 CYS GLY LEU GLY ALA ASP GLY TYR ASN PHE ALA LEU GLN SEQRES 12 B 153 ALA ALA VAL ASN ARG LEU SER LYS SER ASN SEQRES 1 C 153 SER ASN ALA MET SER ASP LYS PHE HIS ILE LEU LEU LEU SEQRES 2 C 153 ASN GLY PRO ASN LEU ASN LEU LEU GLY THR ARG GLU PRO SEQRES 3 C 153 GLU LYS TYR GLY TYR THR THR LEU ALA GLU ILE VAL SER SEQRES 4 C 153 GLN LEU GLU ILE GLN ALA GLN GLY MET ASP VAL ALA LEU SEQRES 5 C 153 SER HIS LEU GLN SER ASN ALA GLU HIS ALA LEU ILE ASP SEQRES 6 C 153 SER ILE HIS GLN ALA ARG GLY ASN THR ASP PHE ILE LEU SEQRES 7 C 153 ILE ASN PRO ALA ALA PHE THR HIS THR SER VAL ALA LEU SEQRES 8 C 153 ARG ASP ALA LEU LEU GLY VAL GLN ILE PRO PHE ILE GLU SEQRES 9 C 153 ILE HIS LEU SER ASN VAL HIS ALA ARG GLU PRO PHE ARG SEQRES 10 C 153 HIS HIS SER TYR LEU SER ASP ILE ALA VAL GLY VAL ILE SEQRES 11 C 153 CYS GLY LEU GLY ALA ASP GLY TYR ASN PHE ALA LEU GLN SEQRES 12 C 153 ALA ALA VAL ASN ARG LEU SER LYS SER ASN SEQRES 1 D 153 SER ASN ALA MET SER ASP LYS PHE HIS ILE LEU LEU LEU SEQRES 2 D 153 ASN GLY PRO ASN LEU ASN LEU LEU GLY THR ARG GLU PRO SEQRES 3 D 153 GLU LYS TYR GLY TYR THR THR LEU ALA GLU ILE VAL SER SEQRES 4 D 153 GLN LEU GLU ILE GLN ALA GLN GLY MET ASP VAL ALA LEU SEQRES 5 D 153 SER HIS LEU GLN SER ASN ALA GLU HIS ALA LEU ILE ASP SEQRES 6 D 153 SER ILE HIS GLN ALA ARG GLY ASN THR ASP PHE ILE LEU SEQRES 7 D 153 ILE ASN PRO ALA ALA PHE THR HIS THR SER VAL ALA LEU SEQRES 8 D 153 ARG ASP ALA LEU LEU GLY VAL GLN ILE PRO PHE ILE GLU SEQRES 9 D 153 ILE HIS LEU SER ASN VAL HIS ALA ARG GLU PRO PHE ARG SEQRES 10 D 153 HIS HIS SER TYR LEU SER ASP ILE ALA VAL GLY VAL ILE SEQRES 11 D 153 CYS GLY LEU GLY ALA ASP GLY TYR ASN PHE ALA LEU GLN SEQRES 12 D 153 ALA ALA VAL ASN ARG LEU SER LYS SER ASN HET BME A 151 4 HET GOL A 152 6 HET GOL A 153 6 HET GOL A 154 6 HET GOL A 155 6 HET GOL A 156 6 HET BME B 151 4 HET GOL B 152 6 HET GOL B 153 6 HET GOL B 154 6 HET BME C 151 4 HET GOL C 152 6 HET GOL C 153 6 HET GOL C 154 6 HET BME D 151 4 HET EDO D 152 4 HET GOL D 153 6 HET GOL D 154 6 HET GOL D 155 6 HET GOL D 156 6 HET GOL D 157 6 HET GOL D 158 6 HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 BME 4(C2 H6 O S) FORMUL 6 GOL 17(C3 H8 O3) FORMUL 20 EDO C2 H6 O2 FORMUL 27 HOH *682(H2 O) HELIX 1 1 ASN A 14 LEU A 18 5 5 HELIX 2 2 GLU A 22 GLY A 27 1 6 HELIX 3 3 THR A 30 MET A 45 1 16 HELIX 4 4 ALA A 56 ARG A 68 1 13 HELIX 5 5 PRO A 78 THR A 84 5 7 HELIX 6 6 SER A 85 GLN A 96 1 12 HELIX 7 7 ASN A 106 ARG A 110 5 5 HELIX 8 8 GLU A 111 HIS A 116 5 6 HELIX 9 9 LEU A 119 ALA A 123 5 5 HELIX 10 10 ALA A 132 SER A 149 1 18 HELIX 11 11 ASN B 14 LEU B 18 5 5 HELIX 12 12 GLU B 22 GLY B 27 1 6 HELIX 13 13 THR B 30 MET B 45 1 16 HELIX 14 14 ALA B 56 ARG B 68 1 13 HELIX 15 15 PRO B 78 HIS B 83 5 6 HELIX 16 16 SER B 85 GLN B 96 1 12 HELIX 17 17 GLU B 111 HIS B 116 5 6 HELIX 18 18 LEU B 119 ALA B 123 5 5 HELIX 19 19 ALA B 132 LYS B 148 1 17 HELIX 20 20 ASN C 14 LEU C 18 5 5 HELIX 21 21 GLU C 22 GLY C 27 1 6 HELIX 22 22 THR C 30 MET C 45 1 16 HELIX 23 23 ALA C 56 ALA C 67 1 12 HELIX 24 24 PRO C 78 THR C 84 5 7 HELIX 25 25 SER C 85 GLN C 96 1 12 HELIX 26 26 ASN C 106 ARG C 110 5 5 HELIX 27 27 GLU C 111 HIS C 116 5 6 HELIX 28 28 ALA C 132 LYS C 148 1 17 HELIX 29 29 ASN D 14 LEU D 18 5 5 HELIX 30 30 GLU D 22 GLY D 27 1 6 HELIX 31 31 THR D 30 MET D 45 1 16 HELIX 32 32 ALA D 56 ALA D 67 1 12 HELIX 33 33 PRO D 78 THR D 84 5 7 HELIX 34 34 SER D 85 GLN D 96 1 12 HELIX 35 35 GLU D 111 HIS D 116 5 6 HELIX 36 36 ALA D 132 SER D 149 1 18 SHEET 1 A10 VAL A 47 GLN A 53 0 SHEET 2 A10 PHE A 5 ASN A 11 1 N LEU A 9 O SER A 50 SHEET 3 A10 PHE A 73 ASN A 77 1 O LEU A 75 N LEU A 10 SHEET 4 A10 PHE A 99 HIS A 103 1 O ILE A 100 N ILE A 76 SHEET 5 A10 GLY A 125 CYS A 128 1 O ILE A 127 N GLU A 101 SHEET 6 A10 GLY D 125 CYS D 128 -1 O VAL D 126 N CYS A 128 SHEET 7 A10 PHE D 99 HIS D 103 1 N HIS D 103 O ILE D 127 SHEET 8 A10 PHE D 73 ASN D 77 1 N ILE D 76 O ILE D 100 SHEET 9 A10 HIS D 6 ASN D 11 1 N LEU D 10 O LEU D 75 SHEET 10 A10 ALA D 48 GLN D 53 1 O SER D 50 N LEU D 9 SHEET 1 B 5 VAL B 47 GLN B 53 0 SHEET 2 B 5 PHE B 5 ASN B 11 1 N PHE B 5 O ALA B 48 SHEET 3 B 5 PHE B 73 ASN B 77 1 O LEU B 75 N LEU B 8 SHEET 4 B 5 PHE B 99 HIS B 103 1 O ILE B 100 N ILE B 76 SHEET 5 B 5 GLY B 125 CYS B 128 1 O ILE B 127 N GLU B 101 SHEET 1 C 5 ALA C 48 GLN C 53 0 SHEET 2 C 5 HIS C 6 ASN C 11 1 N LEU C 9 O SER C 50 SHEET 3 C 5 PHE C 73 ASN C 77 1 O LEU C 75 N LEU C 10 SHEET 4 C 5 PHE C 99 HIS C 103 1 O ILE C 100 N ILE C 76 SHEET 5 C 5 GLY C 125 CYS C 128 1 O ILE C 127 N GLU C 101 LINK SG CYS A 128 S2 BME A 151 1555 1555 2.06 LINK SG CYS B 128 S2 BME B 151 1555 1555 2.02 LINK SG CYS C 128 S2 BME C 151 1555 1555 2.03 LINK SG CYS D 128 S2 BME D 151 1555 1555 2.04 SITE 1 AC1 6 ASN A 106 VAL A 107 HIS A 108 CYS A 128 SITE 2 AC1 6 GOL A 152 BME D 151 SITE 1 AC2 11 HIS A 83 GLU A 101 HIS A 108 ARG A 114 SITE 2 AC2 11 HIS A 115 HIS A 116 SER A 117 SER A 120 SITE 3 AC2 11 VAL A 126 BME A 151 HIS D 108 SITE 1 AC3 8 ALA A 79 HIS A 83 SER A 105 ARG A 110 SITE 2 AC3 8 ARG A 114 HOH A 164 HOH A 305 HOH A 641 SITE 1 AC4 10 LEU A 92 GLN A 96 ILE A 97 PRO A 98 SITE 2 AC4 10 PHE A 99 HOH A 157 HOH A 192 HOH A 302 SITE 3 AC4 10 HOH A 372 HOH A 625 SITE 1 AC5 4 SER A 117 TYR A 118 ASP A 121 HIS D 115 SITE 1 AC6 5 GLU A 111 HOH A 557 HOH A 590 ARG B 89 SITE 2 AC6 5 HOH B 196 SITE 1 AC7 6 ASN B 106 VAL B 107 HIS B 108 CYS B 128 SITE 2 AC7 6 GOL B 153 BME C 151 SITE 1 AC8 10 ALA B 79 HIS B 83 SER B 105 ARG B 110 SITE 2 AC8 10 ARG B 114 HOH B 244 HOH B 497 HOH B 505 SITE 3 AC8 10 HOH B 566 HOH B 643 SITE 1 AC9 11 HIS B 83 GLU B 101 HIS B 103 HIS B 108 SITE 2 AC9 11 ARG B 114 HIS B 115 HIS B 116 SER B 117 SITE 3 AC9 11 SER B 120 BME B 151 HIS C 108 SITE 1 BC1 6 LEU B 92 GLN B 96 ILE B 97 PHE B 99 SITE 2 BC1 6 HOH B 155 HOH B 515 SITE 1 BC2 6 BME B 151 ASN C 106 VAL C 107 VAL C 126 SITE 2 BC2 6 CYS C 128 GOL C 153 SITE 1 BC3 8 HOH A 634 ALA C 79 HIS C 83 SER C 105 SITE 2 BC3 8 ARG C 110 ARG C 114 HOH C 181 HOH C 187 SITE 1 BC4 10 HIS B 108 HIS C 83 GLU C 101 HIS C 108 SITE 2 BC4 10 ARG C 114 HIS C 115 HIS C 116 SER C 117 SITE 3 BC4 10 SER C 120 BME C 151 SITE 1 BC5 6 ARG C 89 HIS C 116 SER C 117 ASP C 121 SITE 2 BC5 6 HOH C 220 HOH C 667 SITE 1 BC6 5 BME A 151 ASN D 106 VAL D 107 HIS D 108 SITE 2 BC6 5 CYS D 128 SITE 1 BC7 5 HIS D 51 SER D 63 HOH D 169 HOH D 171 SITE 2 BC7 5 HOH D 273 SITE 1 BC8 9 ALA D 79 HIS D 83 SER D 105 ARG D 110 SITE 2 BC8 9 ARG D 114 HOH D 214 HOH D 338 HOH D 619 SITE 3 BC8 9 HOH D 642 SITE 1 BC9 6 ARG D 89 HIS D 116 SER D 117 TYR D 118 SITE 2 BC9 6 ASP D 121 HOH D 245 SITE 1 CC1 9 HIS A 108 HIS D 83 GLU D 101 HIS D 108 SITE 2 CC1 9 ARG D 114 HIS D 115 HIS D 116 SER D 117 SITE 3 CC1 9 SER D 120 SITE 1 CC2 4 ARG D 110 GLU D 111 HOH D 601 HOH D 640 SITE 1 CC3 8 LEU D 92 GLN D 96 ILE D 97 PRO D 98 SITE 2 CC3 8 PHE D 99 HOH D 160 HOH D 322 HOH D 655 SITE 1 CC4 7 GLU D 39 ALA D 42 GLN D 43 VAL D 47 SITE 2 CC4 7 ALA D 48 LEU D 49 HOH D 550 CRYST1 90.587 90.587 216.500 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011039 0.006373 0.000000 0.00000 SCALE2 0.000000 0.012747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004619 0.00000