HEADER METAL TRANSPORT 24-FEB-10 3LX5 TITLE CRYSTAL STRUCTURE OF MGMPPNP-BOUND NFEOB FROM S. THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROUS IRON UPTAKE TRANSPORTER PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAINS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 264199; SOURCE 4 STRAIN: LMG 18311; SOURCE 5 GENE: FEOB, STU0608; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS G PROTEIN, IRON TRANSPORT, GTP-BINDING, GTPASE, TRANSMEMBRANE, KEYWDS 2 NUCLEOTIDE-BINDING, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.R.ASH,A.GUILFOYLE,M.J.MAHER,R.J.CLARKE,J.M.GUSS,M.JORMAKKA REVDAT 5 01-NOV-23 3LX5 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3LX5 1 REMARK REVDAT 3 13-JUL-11 3LX5 1 VERSN REVDAT 2 09-JUN-10 3LX5 1 JRNL REVDAT 1 09-MAR-10 3LX5 0 JRNL AUTH M.R.ASH,A.GUILFOYLE,R.J.CLARKE,J.M.GUSS,M.J.MAHER,M.JORMAKKA JRNL TITL POTASSIUM-ACTIVATED GTPASE REACTION IN THE G PROTEIN-COUPLED JRNL TITL 2 FERROUS IRON TRANSPORTER B. JRNL REF J.BIOL.CHEM. V. 285 14594 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20220129 JRNL DOI 10.1074/JBC.M110.111914 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 23665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2027 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87000 REMARK 3 B22 (A**2) : 2.05000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.497 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2171 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2965 ; 1.479 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 5.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;36.262 ;25.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;12.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.891 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1638 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1337 ; 1.486 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2185 ; 2.135 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 834 ; 2.254 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 780 ; 3.239 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1970 22.2890 21.8020 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.0242 REMARK 3 T33: 0.0211 T12: 0.0101 REMARK 3 T13: 0.0105 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.4606 L22: 1.3862 REMARK 3 L33: 1.7255 L12: -0.0829 REMARK 3 L13: -0.9749 L23: 0.1525 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: -0.0777 S13: 0.1985 REMARK 3 S21: -0.0029 S22: 0.0253 S23: 0.0004 REMARK 3 S31: -0.0354 S32: -0.0062 S33: -0.0661 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9150 12.7180 13.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.0414 REMARK 3 T33: 0.0357 T12: -0.0076 REMARK 3 T13: 0.0234 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.0654 L22: 2.7781 REMARK 3 L33: 2.0209 L12: -0.1500 REMARK 3 L13: -0.2060 L23: 1.4004 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: -0.1419 S13: 0.1252 REMARK 3 S21: 0.0434 S22: -0.0080 S23: -0.0122 REMARK 3 S31: 0.0023 S32: 0.0533 S33: -0.0550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3LX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5412 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23847 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HYR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M MALIC ACID, 0.04M MES, 0.04M REMARK 280 TRIS, 25% (W/V) PEG 1500, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.40000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.40000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 162 REMARK 465 THR A 163 REMARK 465 VAL A 164 REMARK 465 GLY A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 266 REMARK 465 LEU A 267 REMARK 465 THR A 268 REMARK 465 LEU A 269 REMARK 465 SER A 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 222 CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 33.33 -86.84 REMARK 500 ASP A 215 66.80 -103.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 AGO A 300 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 15 OG1 REMARK 620 2 THR A 35 OG1 82.8 REMARK 620 3 AGO A 300 O2B 96.6 176.4 REMARK 620 4 AGO A 300 O1G 167.7 87.3 92.8 REMARK 620 5 HOH A 369 O 89.3 90.0 93.5 98.1 REMARK 620 6 HOH A 370 O 83.5 90.2 86.2 89.2 172.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGO A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LX8 RELATED DB: PDB DBREF 3LX5 A 1 270 UNP Q5M586 Q5M586_STRT2 1 270 SEQADV 3LX5 GLY A -1 UNP Q5M586 EXPRESSION TAG SEQADV 3LX5 SER A 0 UNP Q5M586 EXPRESSION TAG SEQRES 1 A 272 GLY SER MET THR GLU ILE ALA LEU ILE GLY ASN PRO ASN SEQRES 2 A 272 SER GLY LYS THR SER LEU PHE ASN LEU ILE THR GLY HIS SEQRES 3 A 272 ASN GLN ARG VAL GLY ASN TRP PRO GLY VAL THR VAL GLU SEQRES 4 A 272 ARG LYS SER GLY LEU VAL LYS LYS ASN LYS ASP LEU GLU SEQRES 5 A 272 ILE GLN ASP LEU PRO GLY ILE TYR SER MET SER PRO TYR SEQRES 6 A 272 SER PRO GLU GLU LYS VAL ALA ARG ASP TYR LEU LEU SER SEQRES 7 A 272 GLN ARG ALA ASP SER ILE LEU ASN VAL VAL ASP ALA THR SEQRES 8 A 272 ASN LEU GLU ARG ASN LEU TYR LEU THR THR GLN LEU ILE SEQRES 9 A 272 GLU THR GLY ILE PRO VAL THR ILE ALA LEU ASN MET ILE SEQRES 10 A 272 ASP VAL LEU ASP GLY GLN GLY LYS LYS ILE ASN VAL ASP SEQRES 11 A 272 LYS LEU SER TYR HIS LEU GLY VAL PRO VAL VAL ALA THR SEQRES 12 A 272 SER ALA LEU LYS GLN THR GLY VAL ASP GLN VAL VAL LYS SEQRES 13 A 272 LYS ALA ALA HIS THR THR THR SER THR VAL GLY ASP LEU SEQRES 14 A 272 ALA PHE PRO ILE TYR ASP ASP ARG LEU GLU ALA ALA ILE SEQRES 15 A 272 SER GLN ILE LEU GLU VAL LEU GLY ASN SER VAL PRO GLN SEQRES 16 A 272 ARG SER ALA ARG PHE TYR ALA ILE LYS LEU PHE GLU GLN SEQRES 17 A 272 ASP SER LEU VAL GLU ALA GLU LEU ASP LEU SER GLN PHE SEQRES 18 A 272 GLN ARG LYS GLU ILE GLU ASP ILE ILE ARG ILE THR GLU SEQRES 19 A 272 GLU ILE PHE THR GLU ASP ALA GLU SER ILE VAL ILE ASN SEQRES 20 A 272 GLU ARG TYR ALA PHE ILE GLU ARG VAL CYS GLN MET ALA SEQRES 21 A 272 GLU SER HIS THR GLU ASP PHE ALA LEU THR LEU SER HET AGO A 300 42 HET MG A 301 1 HET GOL A 400 6 HETNAM AGO 2-AMINO-9-(5-O-[(R)-HYDROXY{[(R)- HETNAM 2 AGO HYDROXY(PHOSPHONOAMINO)PHOSPHORYL]OXY}PHOSPHORYL]-3-O- HETNAM 3 AGO {[2-(METHYLAMINO)PHENYL]CARBONYL}-BETA-D-ERYTHRO- HETNAM 4 AGO PENTOFURANOSYL-2-ULOSE)-1,9-DIHYDRO-6H-PURIN-6-ONE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 AGO C18 H22 N7 O14 P3 FORMUL 3 MG MG 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *112(H2 O) HELIX 1 1 GLY A 13 GLY A 23 1 11 HELIX 2 2 SER A 64 SER A 76 1 13 HELIX 3 3 ASN A 90 THR A 104 1 15 HELIX 4 4 MET A 114 GLN A 121 1 8 HELIX 5 5 ASN A 126 GLY A 135 1 10 HELIX 6 6 GLY A 148 THR A 159 1 12 HELIX 7 7 ASP A 173 GLY A 188 1 16 HELIX 8 8 ASN A 189 VAL A 191 5 3 HELIX 9 9 PRO A 192 ARG A 194 5 3 HELIX 10 10 SER A 195 GLU A 205 1 11 HELIX 11 11 ASP A 207 LEU A 214 1 8 HELIX 12 12 SER A 217 THR A 236 1 20 HELIX 13 13 ASP A 238 GLU A 259 1 22 SHEET 1 A 6 LYS A 39 VAL A 43 0 SHEET 2 A 6 ASN A 46 ASP A 53 -1 O ASP A 53 N LYS A 39 SHEET 3 A 6 GLU A 3 ILE A 7 1 N LEU A 6 O GLN A 52 SHEET 4 A 6 SER A 81 ASP A 87 1 O SER A 81 N ALA A 5 SHEET 5 A 6 VAL A 108 ASN A 113 1 O ALA A 111 N VAL A 86 SHEET 6 A 6 VAL A 138 ALA A 140 1 O VAL A 139 N LEU A 112 LINK OG1 THR A 15 MG MG A 301 1555 1555 2.12 LINK OG1 THR A 35 MG MG A 301 1555 1555 2.08 LINK O2B AGO A 300 MG MG A 301 1555 1555 1.97 LINK O1G AGO A 300 MG MG A 301 1555 1555 2.02 LINK MG MG A 301 O HOH A 369 1555 1555 2.09 LINK MG MG A 301 O HOH A 370 1555 1555 2.33 SITE 1 AC1 26 PRO A 10 ASN A 11 SER A 12 GLY A 13 SITE 2 AC1 26 LYS A 14 THR A 15 SER A 16 VAL A 28 SITE 3 AC1 26 GLY A 29 ASN A 30 GLY A 33 VAL A 34 SITE 4 AC1 26 THR A 35 GLY A 56 ASN A 113 MET A 114 SITE 5 AC1 26 ASP A 116 VAL A 117 SER A 142 ALA A 143 SITE 6 AC1 26 LEU A 144 HOH A 282 MG A 301 HOH A 304 SITE 7 AC1 26 HOH A 369 HOH A 370 SITE 1 AC2 5 THR A 15 THR A 35 AGO A 300 HOH A 369 SITE 2 AC2 5 HOH A 370 SITE 1 AC3 8 GLN A 151 LYS A 154 LYS A 155 HIS A 158 SITE 2 AC3 8 ARG A 221 LYS A 222 GLU A 225 HOH A 375 CRYST1 49.100 82.200 148.800 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006721 0.00000