HEADER TRANSFERASE 24-FEB-10 3LX6 TITLE CRYSTAL STRUCTURE OF PUTATIVE DNA CYTOSINE METHYLASE FROM SHIGELLA TITLE 2 FLEXNERI 2A STR. 2457T COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSINE-SPECIFIC METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A; SOURCE 3 ORGANISM_TAXID: 198215; SOURCE 4 STRAIN: 2457T; SOURCE 5 GENE: DCM, S2100, SF2005, SF2457T_1495; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, DCM, RESTRICTION SYSTEM, TRANSFERASE, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 10-FEB-21 3LX6 1 AUTHOR JRNL SEQADV LINK REVDAT 4 08-NOV-17 3LX6 1 REMARK REVDAT 3 23-MAY-12 3LX6 1 COMPND DBREF REVDAT 2 13-JUL-11 3LX6 1 VERSN REVDAT 1 23-MAR-10 3LX6 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE DNA CYTOSINE METHYLASE FROM JRNL TITL 2 SHIGELLA FLEXNERI 2A STR. 2457T JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 43908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2214 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2966 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5949 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8055 ; 1.463 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 722 ; 6.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;36.229 ;23.033 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 969 ;17.408 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;21.051 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 863 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4630 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3648 ; 0.733 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5872 ; 1.356 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2301 ; 2.090 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2183 ; 3.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 462 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6730 -1.5960 -24.7610 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.2475 REMARK 3 T33: 0.0928 T12: -0.0584 REMARK 3 T13: 0.0708 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.3715 L22: 0.7354 REMARK 3 L33: 3.4313 L12: -0.3858 REMARK 3 L13: -1.1159 L23: 1.0705 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: 0.2939 S13: 0.0084 REMARK 3 S21: -0.1095 S22: 0.0738 S23: 0.0156 REMARK 3 S31: -0.1265 S32: -0.0417 S33: -0.0528 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 462 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0420 -23.8440 -31.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.5158 REMARK 3 T33: 0.3414 T12: -0.1543 REMARK 3 T13: 0.1217 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 1.9524 L22: 2.3521 REMARK 3 L33: 3.1436 L12: 0.2089 REMARK 3 L13: -0.3251 L23: 2.3060 REMARK 3 S TENSOR REMARK 3 S11: 0.2048 S12: -0.1942 S13: 0.1647 REMARK 3 S21: 0.2594 S22: -0.3920 S23: 0.2543 REMARK 3 S31: 0.0410 S32: -0.2167 S33: 0.1872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3LX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43909 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 10% PEG 8K, 8% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.47850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.90350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.47850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.90350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 61 REMARK 465 SER A 62 REMARK 465 LEU A 63 REMARK 465 SER A 64 REMARK 465 GLU A 65 REMARK 465 LYS A 66 REMARK 465 GLU A 67 REMARK 465 PHE A 68 REMARK 465 ALA A 69 REMARK 465 HIS A 70 REMARK 465 LEU A 71 REMARK 465 GLN A 72 REMARK 465 GLY A 184 REMARK 465 VAL A 185 REMARK 465 SER A 186 REMARK 465 LYS A 187 REMARK 465 LYS A 188 REMARK 465 ASN A 189 REMARK 465 SER A 190 REMARK 465 LEU A 191 REMARK 465 GLY A 192 REMARK 465 ARG A 193 REMARK 465 ALA A 194 REMARK 465 HIS A 195 REMARK 465 GLY A 196 REMARK 465 PHE A 197 REMARK 465 HIS A 339 REMARK 465 GLN A 340 REMARK 465 ALA A 341 REMARK 465 ARG A 342 REMARK 465 GLY A 343 REMARK 465 ASN A 344 REMARK 465 GLY A 345 REMARK 465 PHE A 346 REMARK 465 GLY A 347 REMARK 465 GLY A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 MSE B 61 REMARK 465 SER B 62 REMARK 465 LEU B 63 REMARK 465 SER B 64 REMARK 465 GLU B 65 REMARK 465 LYS B 66 REMARK 465 GLU B 67 REMARK 465 PHE B 68 REMARK 465 ALA B 69 REMARK 465 HIS B 70 REMARK 465 LEU B 71 REMARK 465 GLN B 72 REMARK 465 THR B 73 REMARK 465 LEU B 74 REMARK 465 LEU B 75 REMARK 465 GLY B 184 REMARK 465 VAL B 185 REMARK 465 SER B 186 REMARK 465 LYS B 187 REMARK 465 LYS B 188 REMARK 465 ASN B 189 REMARK 465 SER B 190 REMARK 465 LEU B 191 REMARK 465 GLY B 192 REMARK 465 ARG B 193 REMARK 465 ALA B 194 REMARK 465 HIS B 195 REMARK 465 GLY B 196 REMARK 465 PHE B 197 REMARK 465 LEU B 324 REMARK 465 HIS B 339 REMARK 465 GLN B 340 REMARK 465 ALA B 341 REMARK 465 ARG B 342 REMARK 465 GLY B 343 REMARK 465 ASN B 344 REMARK 465 GLY B 345 REMARK 465 PHE B 346 REMARK 465 GLY B 347 REMARK 465 ARG B 398 REMARK 465 GLU B 463 REMARK 465 GLY B 464 REMARK 465 HIS B 465 REMARK 465 HIS B 466 REMARK 465 HIS B 467 REMARK 465 HIS B 468 REMARK 465 HIS B 469 REMARK 465 HIS B 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 LYS A 338 CE NZ REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 GLN B 202 OE1 NE2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 VAL B 327 CG1 CG2 REMARK 470 LEU B 328 CG CD1 CD2 REMARK 470 TRP B 329 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 329 CZ3 CH2 REMARK 470 LYS B 330 CG CD CE NZ REMARK 470 LEU B 332 CG CD1 CD2 REMARK 470 TYR B 333 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 337 CE NZ REMARK 470 LYS B 338 CE NZ REMARK 470 TYR B 348 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP B 380 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP B 380 CH2 REMARK 470 THR B 384 OG1 CG2 REMARK 470 LYS B 387 CG CD CE NZ REMARK 470 ASP B 388 CG OD1 OD2 REMARK 470 PHE B 389 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 395 CG CD OE1 NE2 REMARK 470 ILE B 423 CG1 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 262 112.14 -25.23 REMARK 500 ARG A 276 79.10 -165.89 REMARK 500 ALA A 292 -117.00 50.14 REMARK 500 PRO A 316 -73.30 -57.32 REMARK 500 ASP A 370 -22.61 -153.35 REMARK 500 ALA A 419 47.32 -141.73 REMARK 500 PHE B 93 55.73 33.96 REMARK 500 GLU B 139 -71.00 -95.98 REMARK 500 ARG B 276 88.38 -169.82 REMARK 500 ALA B 292 -118.62 58.36 REMARK 500 SER B 300 -30.88 -32.42 REMARK 500 ASP B 370 -6.65 -170.59 REMARK 500 ASP B 390 30.73 -93.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13594A RELATED DB: TARGETDB DBREF 3LX6 A 63 462 UNP E3Y0J2 E3Y0J2_SHIFL 63 462 DBREF 3LX6 B 63 462 UNP E3Y0J2 E3Y0J2_SHIFL 63 462 SEQADV 3LX6 MSE A 61 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 SER A 62 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 GLU A 463 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 GLY A 464 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS A 465 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS A 466 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS A 467 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS A 468 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS A 469 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS A 470 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 MSE B 61 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 SER B 62 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 GLU B 463 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 GLY B 464 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS B 465 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS B 466 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS B 467 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS B 468 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS B 469 UNP E3Y0J2 EXPRESSION TAG SEQADV 3LX6 HIS B 470 UNP E3Y0J2 EXPRESSION TAG SEQRES 1 A 410 MSE SER LEU SER GLU LYS GLU PHE ALA HIS LEU GLN THR SEQRES 2 A 410 LEU LEU PRO LYS PRO PRO GLU HIS HIS PRO HIS TYR ALA SEQRES 3 A 410 PHE ARG PHE ILE ASP LEU PHE ALA GLY ILE GLY GLY ILE SEQRES 4 A 410 ARG ARG GLY PHE GLU SER ILE GLY GLY GLN CYS VAL PHE SEQRES 5 A 410 THR SER GLU TRP ASN LYS HIS ALA VAL ARG THR TYR LYS SEQRES 6 A 410 ALA ASN HIS TYR CYS ASP PRO ALA THR HIS HIS PHE ASN SEQRES 7 A 410 GLU ASP ILE ARG ASP ILE THR LEU SER HIS GLN GLU GLY SEQRES 8 A 410 VAL SER ASP GLU ALA ALA ALA GLU HIS ILE ARG GLN HIS SEQRES 9 A 410 ILE PRO GLU HIS ASP VAL LEU LEU ALA GLY PHE PRO CYS SEQRES 10 A 410 GLN PRO PHE SER LEU ALA GLY VAL SER LYS LYS ASN SER SEQRES 11 A 410 LEU GLY ARG ALA HIS GLY PHE ALA CYS ASP THR GLN GLY SEQRES 12 A 410 THR LEU PHE PHE ASP VAL VAL ARG ILE ILE ASP ALA ARG SEQRES 13 A 410 ARG PRO ALA MSE PHE VAL LEU GLU ASN VAL LYS ASN LEU SEQRES 14 A 410 LYS SER HIS ASP LYS GLY LYS THR PHE ARG ILE ILE MSE SEQRES 15 A 410 GLN THR LEU ASP GLU LEU GLY TYR ASP VAL ALA ASP ALA SEQRES 16 A 410 GLU ASP ASN GLY PRO ASP ASP PRO LYS ILE ILE ASP GLY SEQRES 17 A 410 LYS HIS PHE LEU PRO GLN HIS ARG GLU ARG ILE VAL LEU SEQRES 18 A 410 VAL GLY PHE ARG ARG ASP LEU ASN LEU LYS ALA ASP PHE SEQRES 19 A 410 THR LEU ARG ASP ILE SER GLU CYS PHE PRO ALA GLN ARG SEQRES 20 A 410 VAL THR LEU ALA GLN LEU LEU ASP PRO MSE VAL GLU ALA SEQRES 21 A 410 LYS TYR ILE LEU THR PRO VAL LEU TRP LYS TYR LEU TYR SEQRES 22 A 410 ARG TYR ALA LYS LYS HIS GLN ALA ARG GLY ASN GLY PHE SEQRES 23 A 410 GLY TYR GLY MSE VAL TYR PRO ASN ASN PRO GLN SER VAL SEQRES 24 A 410 THR ARG THR LEU SER ALA ARG TYR TYR LYS ASP GLY ALA SEQRES 25 A 410 GLU ILE LEU ILE ASP ARG GLY TRP ASP MSE ALA THR GLY SEQRES 26 A 410 GLU LYS ASP PHE ASP ASP PRO LEU ASN GLN GLN HIS ARG SEQRES 27 A 410 PRO ARG ARG LEU THR PRO ARG GLU CYS ALA ARG LEU MSE SEQRES 28 A 410 GLY PHE GLU ALA PRO GLY GLU ALA LYS PHE ARG ILE PRO SEQRES 29 A 410 VAL SER ASP THR GLN ALA TYR ARG GLN PHE GLY ASN SER SEQRES 30 A 410 VAL VAL VAL PRO VAL PHE ALA ALA VAL ALA LYS LEU LEU SEQRES 31 A 410 GLU PRO LYS ILE LYS GLN ALA VAL ALA LEU ARG GLN GLU SEQRES 32 A 410 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 410 MSE SER LEU SER GLU LYS GLU PHE ALA HIS LEU GLN THR SEQRES 2 B 410 LEU LEU PRO LYS PRO PRO GLU HIS HIS PRO HIS TYR ALA SEQRES 3 B 410 PHE ARG PHE ILE ASP LEU PHE ALA GLY ILE GLY GLY ILE SEQRES 4 B 410 ARG ARG GLY PHE GLU SER ILE GLY GLY GLN CYS VAL PHE SEQRES 5 B 410 THR SER GLU TRP ASN LYS HIS ALA VAL ARG THR TYR LYS SEQRES 6 B 410 ALA ASN HIS TYR CYS ASP PRO ALA THR HIS HIS PHE ASN SEQRES 7 B 410 GLU ASP ILE ARG ASP ILE THR LEU SER HIS GLN GLU GLY SEQRES 8 B 410 VAL SER ASP GLU ALA ALA ALA GLU HIS ILE ARG GLN HIS SEQRES 9 B 410 ILE PRO GLU HIS ASP VAL LEU LEU ALA GLY PHE PRO CYS SEQRES 10 B 410 GLN PRO PHE SER LEU ALA GLY VAL SER LYS LYS ASN SER SEQRES 11 B 410 LEU GLY ARG ALA HIS GLY PHE ALA CYS ASP THR GLN GLY SEQRES 12 B 410 THR LEU PHE PHE ASP VAL VAL ARG ILE ILE ASP ALA ARG SEQRES 13 B 410 ARG PRO ALA MSE PHE VAL LEU GLU ASN VAL LYS ASN LEU SEQRES 14 B 410 LYS SER HIS ASP LYS GLY LYS THR PHE ARG ILE ILE MSE SEQRES 15 B 410 GLN THR LEU ASP GLU LEU GLY TYR ASP VAL ALA ASP ALA SEQRES 16 B 410 GLU ASP ASN GLY PRO ASP ASP PRO LYS ILE ILE ASP GLY SEQRES 17 B 410 LYS HIS PHE LEU PRO GLN HIS ARG GLU ARG ILE VAL LEU SEQRES 18 B 410 VAL GLY PHE ARG ARG ASP LEU ASN LEU LYS ALA ASP PHE SEQRES 19 B 410 THR LEU ARG ASP ILE SER GLU CYS PHE PRO ALA GLN ARG SEQRES 20 B 410 VAL THR LEU ALA GLN LEU LEU ASP PRO MSE VAL GLU ALA SEQRES 21 B 410 LYS TYR ILE LEU THR PRO VAL LEU TRP LYS TYR LEU TYR SEQRES 22 B 410 ARG TYR ALA LYS LYS HIS GLN ALA ARG GLY ASN GLY PHE SEQRES 23 B 410 GLY TYR GLY MSE VAL TYR PRO ASN ASN PRO GLN SER VAL SEQRES 24 B 410 THR ARG THR LEU SER ALA ARG TYR TYR LYS ASP GLY ALA SEQRES 25 B 410 GLU ILE LEU ILE ASP ARG GLY TRP ASP MSE ALA THR GLY SEQRES 26 B 410 GLU LYS ASP PHE ASP ASP PRO LEU ASN GLN GLN HIS ARG SEQRES 27 B 410 PRO ARG ARG LEU THR PRO ARG GLU CYS ALA ARG LEU MSE SEQRES 28 B 410 GLY PHE GLU ALA PRO GLY GLU ALA LYS PHE ARG ILE PRO SEQRES 29 B 410 VAL SER ASP THR GLN ALA TYR ARG GLN PHE GLY ASN SER SEQRES 30 B 410 VAL VAL VAL PRO VAL PHE ALA ALA VAL ALA LYS LEU LEU SEQRES 31 B 410 GLU PRO LYS ILE LYS GLN ALA VAL ALA LEU ARG GLN GLU SEQRES 32 B 410 GLY HIS HIS HIS HIS HIS HIS MODRES 3LX6 MSE A 220 MET SELENOMETHIONINE MODRES 3LX6 MSE A 242 MET SELENOMETHIONINE MODRES 3LX6 MSE A 317 MET SELENOMETHIONINE MODRES 3LX6 MSE A 350 MET SELENOMETHIONINE MODRES 3LX6 MSE A 382 MET SELENOMETHIONINE MODRES 3LX6 MSE A 411 MET SELENOMETHIONINE MODRES 3LX6 MSE B 220 MET SELENOMETHIONINE MODRES 3LX6 MSE B 242 MET SELENOMETHIONINE MODRES 3LX6 MSE B 317 MET SELENOMETHIONINE MODRES 3LX6 MSE B 350 MET SELENOMETHIONINE MODRES 3LX6 MSE B 382 MET SELENOMETHIONINE MODRES 3LX6 MSE B 411 MET SELENOMETHIONINE HET MSE A 220 8 HET MSE A 242 8 HET MSE A 317 8 HET MSE A 350 8 HET MSE A 382 8 HET MSE A 411 8 HET MSE B 220 8 HET MSE B 242 8 HET MSE B 317 8 HET MSE B 350 8 HET MSE B 382 8 HET MSE B 411 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *29(H2 O) HELIX 1 1 GLY A 97 SER A 105 1 9 HELIX 2 2 ASN A 117 HIS A 128 1 12 HELIX 3 3 ILE A 141 LEU A 146 1 6 HELIX 4 4 SER A 153 ILE A 165 1 13 HELIX 5 5 ALA A 198 GLN A 202 5 5 HELIX 6 6 THR A 204 ARG A 217 1 14 HELIX 7 7 ASN A 228 LYS A 234 5 7 HELIX 8 8 GLY A 235 LEU A 248 1 14 HELIX 9 9 LYS A 269 PHE A 271 5 3 HELIX 10 10 ASP A 287 ASN A 289 5 3 HELIX 11 11 THR A 295 PHE A 303 5 9 HELIX 12 12 THR A 309 LEU A 314 1 6 HELIX 13 13 GLU A 319 ILE A 323 5 5 HELIX 14 14 THR A 325 LYS A 338 1 14 HELIX 15 15 SER A 364 ASP A 370 5 7 HELIX 16 16 ASP A 381 ASP A 388 1 8 HELIX 17 17 LEU A 393 ARG A 398 5 6 HELIX 18 18 THR A 403 MSE A 411 1 9 HELIX 19 19 SER A 426 SER A 437 1 12 HELIX 20 20 VAL A 439 GLN A 462 1 24 HELIX 21 21 GLY B 97 ILE B 106 1 10 HELIX 22 22 ASN B 117 ALA B 126 1 10 HELIX 23 23 ILE B 141 LEU B 146 1 6 HELIX 24 24 SER B 153 ILE B 165 1 13 HELIX 25 25 ALA B 198 GLN B 202 5 5 HELIX 26 26 THR B 204 ARG B 217 1 14 HELIX 27 27 VAL B 226 LYS B 234 5 9 HELIX 28 28 GLY B 235 GLY B 249 1 15 HELIX 29 29 LYS B 269 PHE B 271 5 3 HELIX 30 30 ASP B 287 ASN B 289 5 3 HELIX 31 31 THR B 295 PHE B 303 5 9 HELIX 32 32 LEU B 310 LEU B 314 5 5 HELIX 33 33 GLU B 319 ILE B 323 5 5 HELIX 34 34 THR B 325 LYS B 337 1 13 HELIX 35 35 SER B 364 ASP B 370 5 7 HELIX 36 36 THR B 403 GLY B 412 1 10 HELIX 37 37 SER B 426 ASN B 436 1 11 HELIX 38 38 VAL B 439 GLN B 462 1 24 SHEET 1 A 7 HIS A 136 ASN A 138 0 SHEET 2 A 7 GLY A 108 SER A 114 1 N THR A 113 O HIS A 136 SHEET 3 A 7 PHE A 87 LEU A 92 1 N PHE A 89 O GLN A 109 SHEET 4 A 7 VAL A 170 ALA A 173 1 O LEU A 172 N LEU A 92 SHEET 5 A 7 MSE A 220 VAL A 226 1 O VAL A 222 N LEU A 171 SHEET 6 A 7 GLU A 277 ARG A 285 -1 O LEU A 281 N LEU A 223 SHEET 7 A 7 TYR A 250 VAL A 252 -1 N ASP A 251 O PHE A 284 SHEET 1 B 7 HIS A 136 ASN A 138 0 SHEET 2 B 7 GLY A 108 SER A 114 1 N THR A 113 O HIS A 136 SHEET 3 B 7 PHE A 87 LEU A 92 1 N PHE A 89 O GLN A 109 SHEET 4 B 7 VAL A 170 ALA A 173 1 O LEU A 172 N LEU A 92 SHEET 5 B 7 MSE A 220 VAL A 226 1 O VAL A 222 N LEU A 171 SHEET 6 B 7 GLU A 277 ARG A 285 -1 O LEU A 281 N LEU A 223 SHEET 7 B 7 ILE A 265 ASP A 267 -1 N ILE A 266 O ARG A 278 SHEET 1 C 3 MSE A 350 VAL A 351 0 SHEET 2 C 3 LEU A 375 ILE A 376 1 O LEU A 375 N VAL A 351 SHEET 3 C 3 ARG A 400 ARG A 401 -1 O ARG A 400 N ILE A 376 SHEET 1 D 7 PHE B 137 ASN B 138 0 SHEET 2 D 7 GLY B 108 SER B 114 1 N THR B 113 O ASN B 138 SHEET 3 D 7 PHE B 87 LEU B 92 1 N ASP B 91 O SER B 114 SHEET 4 D 7 VAL B 170 ALA B 173 1 O LEU B 172 N LEU B 92 SHEET 5 D 7 MSE B 220 ASN B 225 1 O VAL B 222 N LEU B 171 SHEET 6 D 7 GLU B 277 ARG B 285 -1 O LEU B 281 N LEU B 223 SHEET 7 D 7 TYR B 250 VAL B 252 -1 N ASP B 251 O PHE B 284 SHEET 1 E 7 PHE B 137 ASN B 138 0 SHEET 2 E 7 GLY B 108 SER B 114 1 N THR B 113 O ASN B 138 SHEET 3 E 7 PHE B 87 LEU B 92 1 N ASP B 91 O SER B 114 SHEET 4 E 7 VAL B 170 ALA B 173 1 O LEU B 172 N LEU B 92 SHEET 5 E 7 MSE B 220 ASN B 225 1 O VAL B 222 N LEU B 171 SHEET 6 E 7 GLU B 277 ARG B 285 -1 O LEU B 281 N LEU B 223 SHEET 7 E 7 ILE B 265 ASP B 267 -1 N ILE B 266 O ARG B 278 SHEET 1 F 3 MSE B 350 VAL B 351 0 SHEET 2 F 3 LEU B 375 ILE B 376 1 O LEU B 375 N VAL B 351 SHEET 3 F 3 ARG B 400 ARG B 401 -1 O ARG B 400 N ILE B 376 LINK C ALA A 219 N MSE A 220 1555 1555 1.34 LINK C MSE A 220 N PHE A 221 1555 1555 1.32 LINK C ILE A 241 N MSE A 242 1555 1555 1.34 LINK C MSE A 242 N GLN A 243 1555 1555 1.33 LINK C PRO A 316 N MSE A 317 1555 1555 1.33 LINK C MSE A 317 N VAL A 318 1555 1555 1.32 LINK C GLY A 349 N MSE A 350 1555 1555 1.32 LINK C MSE A 350 N VAL A 351 1555 1555 1.32 LINK C ASP A 381 N MSE A 382 1555 1555 1.33 LINK C MSE A 382 N ALA A 383 1555 1555 1.33 LINK C LEU A 410 N MSE A 411 1555 1555 1.34 LINK C MSE A 411 N GLY A 412 1555 1555 1.33 LINK C ALA B 219 N MSE B 220 1555 1555 1.35 LINK C MSE B 220 N PHE B 221 1555 1555 1.35 LINK C ILE B 241 N MSE B 242 1555 1555 1.34 LINK C MSE B 242 N GLN B 243 1555 1555 1.34 LINK C PRO B 316 N MSE B 317 1555 1555 1.34 LINK C MSE B 317 N VAL B 318 1555 1555 1.34 LINK C GLY B 349 N MSE B 350 1555 1555 1.33 LINK C MSE B 350 N VAL B 351 1555 1555 1.33 LINK C ASP B 381 N MSE B 382 1555 1555 1.33 LINK C MSE B 382 N ALA B 383 1555 1555 1.34 LINK C LEU B 410 N MSE B 411 1555 1555 1.34 LINK C MSE B 411 N GLY B 412 1555 1555 1.33 CISPEP 1 HIS A 82 PRO A 83 0 9.04 CISPEP 2 HIS B 82 PRO B 83 0 8.33 CRYST1 122.957 83.807 113.236 90.00 118.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008133 0.000000 0.004417 0.00000 SCALE2 0.000000 0.011932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010050 0.00000