HEADER IMMUNE SYSTEM 25-FEB-10 3LXW OBSLTE 11-JAN-12 3LXW 3V70 TITLE CRYSTAL STRUCTURE OF HUMAN GTPASE IMAP FAMILY MEMBER 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE IMAP FAMILY MEMBER 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IMMUNITY-ASSOCIATED PROTEIN 1, HIMAP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GIMAP1, IMAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS IMMUNITY, GTPASE, STRUCTURAL GENOMICS CONSORTIUM, SGC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.NEDYALKOVA,Y.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,D.W.ANDREWS,H.PARK, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 11-JAN-12 3LXW 1 OBSLTE VERSN REVDAT 1 09-MAR-10 3LXW 0 JRNL AUTH L.NEDYALKOVA,Y.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV, JRNL AUTH 3 D.W.ANDREWS,H.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN GTPASE IMAP FAMILY MEMBER 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 21544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.851 REMARK 3 FREE R VALUE TEST SET COUNT : 1045 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04900 REMARK 3 B22 (A**2) : -0.04900 REMARK 3 B33 (A**2) : 0.07400 REMARK 3 B12 (A**2) : -0.02500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.319 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.071 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3208 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4361 ; 1.111 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 5.055 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;28.403 ;22.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 480 ;14.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;21.369 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2412 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2081 ; 0.379 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3272 ; 0.739 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1127 ; 1.322 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1089 ; 2.196 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8316 17.7878 120.5808 REMARK 3 T TENSOR REMARK 3 T11: 0.0923 T22: 0.0377 REMARK 3 T33: 0.0392 T12: -0.0353 REMARK 3 T13: -0.0276 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.4035 L22: 2.8721 REMARK 3 L33: 2.7374 L12: 0.0453 REMARK 3 L13: -0.8432 L23: -0.2981 REMARK 3 S TENSOR REMARK 3 S11: 0.0994 S12: 0.0395 S13: 0.0216 REMARK 3 S21: 0.1992 S22: -0.0679 S23: -0.2160 REMARK 3 S31: 0.0159 S32: -0.0561 S33: -0.0315 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6649 29.8960 91.1934 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.0971 REMARK 3 T33: 0.0242 T12: -0.0351 REMARK 3 T13: -0.0183 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.6226 L22: 4.7087 REMARK 3 L33: 3.4375 L12: 0.2080 REMARK 3 L13: 0.2890 L23: -0.9251 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: -0.1327 S13: 0.1918 REMARK 3 S21: 0.0172 S22: -0.1391 S23: 0.0727 REMARK 3 S31: -0.4530 S32: 0.0585 S33: 0.0580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3LXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-10. REMARK 100 THE RCSB ID CODE IS RCSB057867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNPUBLISHED MODEL OF HUMAN GIMAP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG3350, 0.2M SODIUM CHLORIDE, REMARK 280 0.1M HEPES. GDP AND 1:100 DISPASE WERE ALSO ADDED, PH 7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.67400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.48314 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.64467 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 40.67400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.48314 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.64467 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 40.67400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.48314 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.64467 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.96629 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 119.28933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.96629 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 119.28933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.96629 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 119.28933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 ASN A 19 REMARK 465 LEU A 20 REMARK 465 TYR A 21 REMARK 465 PHE A 22 REMARK 465 GLN A 23 REMARK 465 GLY A 24 REMARK 465 GLU A 25 REMARK 465 PHE A 54 REMARK 465 SER A 55 REMARK 465 ARG A 56 REMARK 465 LEU A 57 REMARK 465 GLY A 58 REMARK 465 ALA A 59 REMARK 465 THR A 60 REMARK 465 SER A 61 REMARK 465 VAL A 62 REMARK 465 GLN A 252 REMARK 465 ARG A 253 REMARK 465 MET B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 GLU B 18 REMARK 465 ASN B 19 REMARK 465 LEU B 20 REMARK 465 TYR B 21 REMARK 465 PHE B 22 REMARK 465 GLN B 23 REMARK 465 GLY B 24 REMARK 465 GLU B 25 REMARK 465 SER B 26 REMARK 465 PHE B 54 REMARK 465 SER B 55 REMARK 465 ARG B 56 REMARK 465 LEU B 57 REMARK 465 GLY B 58 REMARK 465 ALA B 59 REMARK 465 THR B 60 REMARK 465 SER B 61 REMARK 465 VAL B 62 REMARK 465 ASP B 74 REMARK 465 LYS B 75 REMARK 465 CYS B 76 REMARK 465 GLU B 155 REMARK 465 ASP B 156 REMARK 465 LEU B 157 REMARK 465 ALA B 158 REMARK 465 GLY B 159 REMARK 465 GLY B 160 REMARK 465 SER B 161 REMARK 465 GLN B 252 REMARK 465 ARG B 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 26 OG REMARK 470 THR A 63 OG1 CG2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 71 NH1 NH2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 74 CG OD1 OD2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 THR A 94 OG1 CG2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 GLN A 130 CG CD OE1 NE2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 163 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 164 CG OD1 OD2 REMARK 470 SER A 167 OG REMARK 470 THR A 169 OG1 CG2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 GLU A 202 CD OE1 OE2 REMARK 470 GLN A 203 CD OE1 NE2 REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ARG A 246 NE CZ NH1 NH2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 73 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 73 CZ3 CH2 REMARK 470 HIS B 77 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 92 OG REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 THR B 94 OG1 CG2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 133 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 HIS B 163 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 164 CG OD1 OD2 REMARK 470 VAL B 166 CG1 CG2 REMARK 470 SER B 167 OG REMARK 470 ASN B 168 CG OD1 ND2 REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 ARG B 172 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 175 CG CD NE CZ NH1 NH2 REMARK 470 THR B 193 OG1 CG2 REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 GLU B 198 CD OE1 OE2 REMARK 470 GLU B 202 CD OE1 OE2 REMARK 470 GLN B 203 CD OE1 NE2 REMARK 470 GLU B 214 CD OE1 OE2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 186 CB CYS A 186 SG -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 -101.95 56.95 REMARK 500 PRO A 84 -159.32 -89.93 REMARK 500 ARG A 123 58.13 -140.24 REMARK 500 PRO B 84 -159.26 -85.47 REMARK 500 ASN B 171 81.69 -62.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 4 O REMARK 620 2 HOH B 5 O 93.1 REMARK 620 3 HOH B 6 O 115.3 83.1 REMARK 620 4 GDP B 401 O3B 105.8 158.4 97.6 REMARK 620 5 SER B 41 OG 90.2 84.3 152.0 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 401 O3B REMARK 620 2 HOH A 3 O 172.2 REMARK 620 3 HOH A 2 O 91.2 96.2 REMARK 620 4 HOH A 254 O 97.3 83.7 100.1 REMARK 620 5 SER A 41 OG 90.5 87.6 86.5 169.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LXX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN GTPASE IMAP FAMILY MEMBER 4 DBREF 3LXW A 25 253 UNP Q8WWP7 GIMA1_HUMAN 25 253 DBREF 3LXW B 25 253 UNP Q8WWP7 GIMA1_HUMAN 25 253 SEQADV 3LXW MET A 7 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS A 8 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS A 9 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS A 10 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS A 11 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS A 12 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS A 13 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW SER A 14 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW SER A 15 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW GLY A 16 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW ARG A 17 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW GLU A 18 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW ASN A 19 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW LEU A 20 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW TYR A 21 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW PHE A 22 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW GLN A 23 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW GLY A 24 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW MET B 7 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS B 8 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS B 9 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS B 10 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS B 11 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS B 12 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW HIS B 13 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW SER B 14 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW SER B 15 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW GLY B 16 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW ARG B 17 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW GLU B 18 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW ASN B 19 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW LEU B 20 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW TYR B 21 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW PHE B 22 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW GLN B 23 UNP Q8WWP7 EXPRESSION TAG SEQADV 3LXW GLY B 24 UNP Q8WWP7 EXPRESSION TAG SEQRES 1 A 247 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 247 LEU TYR PHE GLN GLY GLU SER THR ARG ARG LEU ILE LEU SEQRES 3 A 247 VAL GLY ARG THR GLY ALA GLY LYS SER ALA THR GLY ASN SEQRES 4 A 247 SER ILE LEU GLY GLN ARG ARG PHE PHE SER ARG LEU GLY SEQRES 5 A 247 ALA THR SER VAL THR ARG ALA CYS THR THR GLY SER ARG SEQRES 6 A 247 ARG TRP ASP LYS CYS HIS VAL GLU VAL VAL ASP THR PRO SEQRES 7 A 247 ASP ILE PHE SER SER GLN VAL SER LYS THR ASP PRO GLY SEQRES 8 A 247 CYS GLU GLU ARG GLY HIS CYS TYR LEU LEU SER ALA PRO SEQRES 9 A 247 GLY PRO HIS ALA LEU LEU LEU VAL THR GLN LEU GLY ARG SEQRES 10 A 247 PHE THR ALA GLN ASP GLN GLN ALA VAL ARG GLN VAL ARG SEQRES 11 A 247 ASP MET PHE GLY GLU ASP VAL LEU LYS TRP MET VAL ILE SEQRES 12 A 247 VAL PHE THR ARG LYS GLU ASP LEU ALA GLY GLY SER LEU SEQRES 13 A 247 HIS ASP TYR VAL SER ASN THR GLU ASN ARG ALA LEU ARG SEQRES 14 A 247 GLU LEU VAL ALA GLU CYS GLY GLY ARG VAL CYS ALA PHE SEQRES 15 A 247 ASP ASN ARG ALA THR GLY ARG GLU GLN GLU ALA GLN VAL SEQRES 16 A 247 GLU GLN LEU LEU GLY MET VAL GLU GLY LEU VAL LEU GLU SEQRES 17 A 247 HIS LYS GLY ALA HIS TYR SER ASN GLU VAL TYR GLU LEU SEQRES 18 A 247 ALA GLN VAL LEU ARG TRP ALA GLY PRO GLU GLU ARG LEU SEQRES 19 A 247 ARG ARG VAL ALA GLU ARG VAL ALA ALA ARG VAL GLN ARG SEQRES 1 B 247 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 247 LEU TYR PHE GLN GLY GLU SER THR ARG ARG LEU ILE LEU SEQRES 3 B 247 VAL GLY ARG THR GLY ALA GLY LYS SER ALA THR GLY ASN SEQRES 4 B 247 SER ILE LEU GLY GLN ARG ARG PHE PHE SER ARG LEU GLY SEQRES 5 B 247 ALA THR SER VAL THR ARG ALA CYS THR THR GLY SER ARG SEQRES 6 B 247 ARG TRP ASP LYS CYS HIS VAL GLU VAL VAL ASP THR PRO SEQRES 7 B 247 ASP ILE PHE SER SER GLN VAL SER LYS THR ASP PRO GLY SEQRES 8 B 247 CYS GLU GLU ARG GLY HIS CYS TYR LEU LEU SER ALA PRO SEQRES 9 B 247 GLY PRO HIS ALA LEU LEU LEU VAL THR GLN LEU GLY ARG SEQRES 10 B 247 PHE THR ALA GLN ASP GLN GLN ALA VAL ARG GLN VAL ARG SEQRES 11 B 247 ASP MET PHE GLY GLU ASP VAL LEU LYS TRP MET VAL ILE SEQRES 12 B 247 VAL PHE THR ARG LYS GLU ASP LEU ALA GLY GLY SER LEU SEQRES 13 B 247 HIS ASP TYR VAL SER ASN THR GLU ASN ARG ALA LEU ARG SEQRES 14 B 247 GLU LEU VAL ALA GLU CYS GLY GLY ARG VAL CYS ALA PHE SEQRES 15 B 247 ASP ASN ARG ALA THR GLY ARG GLU GLN GLU ALA GLN VAL SEQRES 16 B 247 GLU GLN LEU LEU GLY MET VAL GLU GLY LEU VAL LEU GLU SEQRES 17 B 247 HIS LYS GLY ALA HIS TYR SER ASN GLU VAL TYR GLU LEU SEQRES 18 B 247 ALA GLN VAL LEU ARG TRP ALA GLY PRO GLU GLU ARG LEU SEQRES 19 B 247 ARG ARG VAL ALA GLU ARG VAL ALA ALA ARG VAL GLN ARG HET GDP A 401 28 HET MG A 402 1 HET UNX A 1 1 HET GDP B 401 28 HET MG B 402 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 UNX X FORMUL 8 HOH *27(H2 O) HELIX 1 1 GLY A 39 GLY A 49 1 11 HELIX 2 2 GLN A 90 ASP A 95 1 6 HELIX 3 3 CYS A 98 ALA A 109 1 12 HELIX 4 4 THR A 125 GLY A 140 1 16 HELIX 5 5 GLU A 141 LYS A 145 5 5 HELIX 6 6 ARG A 153 ALA A 158 5 6 HELIX 7 7 SER A 161 THR A 169 1 9 HELIX 8 8 ASN A 171 CYS A 181 1 11 HELIX 9 9 THR A 193 HIS A 215 1 23 HELIX 10 10 ASN A 222 LEU A 231 1 10 HELIX 11 11 ARG A 232 ALA A 234 5 3 HELIX 12 12 GLY A 235 VAL A 251 1 17 HELIX 13 13 GLY B 39 GLY B 49 1 11 HELIX 14 14 GLN B 90 ASP B 95 1 6 HELIX 15 15 CYS B 98 ALA B 109 1 12 HELIX 16 16 THR B 125 GLY B 140 1 16 HELIX 17 17 GLU B 141 LYS B 145 5 5 HELIX 18 18 ASP B 164 THR B 169 1 6 HELIX 19 19 ASN B 171 CYS B 181 1 11 HELIX 20 20 GLY B 194 HIS B 215 1 22 HELIX 21 21 ASN B 222 LEU B 231 1 10 HELIX 22 22 GLY B 235 VAL B 251 1 17 SHEET 1 A 6 THR A 67 TRP A 73 0 SHEET 2 A 6 CYS A 76 ASP A 82 -1 O CYS A 76 N TRP A 73 SHEET 3 A 6 THR A 27 VAL A 33 1 N LEU A 30 O GLU A 79 SHEET 4 A 6 ALA A 114 GLN A 120 1 O LEU A 116 N ILE A 31 SHEET 5 A 6 MET A 147 THR A 152 1 O VAL A 148 N LEU A 115 SHEET 6 A 6 VAL A 185 ALA A 187 1 O CYS A 186 N PHE A 151 SHEET 1 B 6 THR B 67 ARG B 71 0 SHEET 2 B 6 VAL B 78 ASP B 82 -1 O VAL B 80 N GLY B 69 SHEET 3 B 6 ARG B 28 VAL B 33 1 N LEU B 32 O VAL B 81 SHEET 4 B 6 ALA B 114 GLN B 120 1 O LEU B 116 N ILE B 31 SHEET 5 B 6 MET B 147 THR B 152 1 O THR B 152 N THR B 119 SHEET 6 B 6 VAL B 185 PHE B 188 1 O PHE B 188 N PHE B 151 LINK MG MG B 402 O HOH B 4 1555 1555 1.95 LINK MG MG B 402 O HOH B 5 1555 1555 2.04 LINK O3B GDP A 401 MG MG A 402 1555 1555 2.04 LINK MG MG A 402 O HOH A 3 1555 1555 2.12 LINK MG MG B 402 O HOH B 6 1555 1555 2.13 LINK MG MG A 402 O HOH A 2 1555 1555 2.14 LINK MG MG A 402 O HOH A 254 1555 1555 2.18 LINK O3B GDP B 401 MG MG B 402 1555 1555 2.19 LINK OG SER B 41 MG MG B 402 1555 1555 2.26 LINK OG SER A 41 MG MG A 402 1555 1555 2.41 CISPEP 1 ALA A 109 PRO A 110 0 2.24 CISPEP 2 ALA B 109 PRO B 110 0 3.37 SITE 1 AC1 18 HOH A 2 GLY A 37 ALA A 38 GLY A 39 SITE 2 AC1 18 LYS A 40 SER A 41 ALA A 42 GLN A 120 SITE 3 AC1 18 THR A 152 ARG A 153 GLU A 155 PHE A 188 SITE 4 AC1 18 ASP A 189 ASN A 190 ARG A 191 HOH A 254 SITE 5 AC1 18 HOH A 266 MG A 402 SITE 1 AC2 5 HOH A 2 HOH A 3 SER A 41 HOH A 254 SITE 2 AC2 5 GDP A 401 SITE 1 AC3 15 HOH B 6 ARG B 35 GLY B 37 ALA B 38 SITE 2 AC3 15 GLY B 39 LYS B 40 SER B 41 ALA B 42 SITE 3 AC3 15 THR B 152 ARG B 153 PHE B 188 ASP B 189 SITE 4 AC3 15 ASN B 190 ARG B 191 MG B 402 SITE 1 AC4 5 HOH B 4 HOH B 5 HOH B 6 SER B 41 SITE 2 AC4 5 GDP B 401 CRYST1 81.348 81.348 178.934 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012293 0.007097 0.000000 0.00000 SCALE2 0.000000 0.014195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005589 0.00000