HEADER IMMUNE SYSTEM 25-FEB-10 3LXX TITLE CRYSTAL STRUCTURE OF HUMAN GTPASE IMAP FAMILY MEMBER 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE IMAP FAMILY MEMBER 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMMUNITY-ASSOCIATED PROTEIN 4, IMMUNITY-ASSOCIATED COMPND 5 NUCLEOTIDE 1 PROTEIN, IAN-1, HIAN1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GIMAP4, IAN1, IMAP4, MSTP062; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, COILED COIL, GTP-BINDING, KEYWDS 2 NUCLEOTIDE-BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHEN,L.NEDYALKOVA,Y.TONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,D.W.ANDREWS,H.PARK, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 08-NOV-17 3LXX 1 REMARK REVDAT 1 09-MAR-10 3LXX 0 JRNL AUTH Y.SHEN,L.NEDYALKOVA,Y.TONG,W.TEMPEL,F.MACKENZIE, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV, JRNL AUTH 3 D.W.ANDREWS,H.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN GTPASE IMAP FAMILY MEMBER 4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 11614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.856 REMARK 3 FREE R VALUE TEST SET COUNT : 564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 635 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.4810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23000 REMARK 3 B22 (A**2) : -0.46700 REMARK 3 B33 (A**2) : -0.76300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1274 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1731 ; 1.262 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2010 ; 0.854 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 165 ; 5.441 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;27.799 ;22.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 197 ;13.010 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.339 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 210 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1403 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 258 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 833 ; 0.574 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 345 ; 0.115 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1312 ; 1.110 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 441 ; 1.817 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 419 ; 2.778 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1023 36.3916 11.1784 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.0404 REMARK 3 T33: 0.0591 T12: -0.0281 REMARK 3 T13: 0.0254 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.4764 L22: 3.0016 REMARK 3 L33: 5.0453 L12: -0.4899 REMARK 3 L13: 0.7444 L23: 0.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.0388 S13: -0.0838 REMARK 3 S21: -0.1177 S22: -0.0751 S23: 0.2505 REMARK 3 S31: 0.3410 S32: -0.3253 S33: 0.0704 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3LXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-09; 19-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 23-ID-B; 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98013; 0.97948 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; MARMOSAIC REMARK 200 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-3350, 0.25M SODIUM/POTASSIUM REMARK 280 TARTRATE, 0.1M HEPES. 1:100 DISPASE WAS ADDED, PH 7.8, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.27750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.27750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.63300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.33150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.63300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.33150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.27750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.63300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.33150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.27750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.63300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.33150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 41.26600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.27750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 ARG A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 16 REMARK 465 PHE A 17 REMARK 465 GLN A 18 REMARK 465 GLY A 19 REMARK 465 GLY A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 ARG A 23 REMARK 465 GLN A 24 REMARK 465 GLU A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 ASN A 28 REMARK 465 GLY A 59 REMARK 465 THR A 60 REMARK 465 ALA A 61 REMARK 465 ALA A 62 REMARK 465 LYS A 63 REMARK 465 SER A 64 REMARK 465 ILE A 65 REMARK 465 ASP A 91 REMARK 465 THR A 92 REMARK 465 GLU A 93 REMARK 465 VAL A 94 REMARK 465 PRO A 95 REMARK 465 GLY A 160 REMARK 465 ASP A 161 REMARK 465 THR A 162 REMARK 465 ASN A 163 REMARK 465 LEU A 164 REMARK 465 HIS A 165 REMARK 465 ASP A 166 REMARK 465 TYR A 167 REMARK 465 LEU A 168 REMARK 465 ARG A 169 REMARK 465 GLU A 170 REMARK 465 ALA A 171 REMARK 465 THR A 222 REMARK 465 ASN A 223 REMARK 465 ARG A 224 REMARK 465 MSE A 225 REMARK 465 TYR A 226 REMARK 465 GLN A 227 REMARK 465 ARG A 228 REMARK 465 ALA A 229 REMARK 465 GLU A 230 REMARK 465 GLU A 231 REMARK 465 GLU A 232 REMARK 465 ILE A 233 REMARK 465 GLN A 234 REMARK 465 LYS A 235 REMARK 465 GLN A 236 REMARK 465 THR A 237 REMARK 465 GLN A 238 REMARK 465 ALA A 239 REMARK 465 MSE A 240 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 29 OG REMARK 470 LYS A 38 CD CE NZ REMARK 470 LYS A 54 CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 SER A 75 OG REMARK 470 LYS A 77 CE NZ REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 ASN A 96 CG OD1 ND2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 THR A 127 OG1 CG2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 HIS A 131 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 CYS A 220 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 77 -125.97 52.63 REMARK 500 THR A 127 -69.73 -125.77 REMARK 500 GLU A 128 -66.47 -135.59 REMARK 500 ASN A 216 95.22 -66.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 245 O REMARK 620 2 GDP A 401 O3B 93.7 REMARK 620 3 SER A 44 OG 103.2 92.9 REMARK 620 4 HOH A 244 O 84.8 86.4 172.0 REMARK 620 5 THR A 66 OG1 85.6 179.2 87.7 93.0 REMARK 620 6 HOH A 243 O 171.6 87.6 85.0 87.0 92.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LXW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN GTPASE IMAP FAMILY MEMBER 1 DBREF 3LXX A 20 240 UNP Q9NUV9 GIMA4_HUMAN 20 240 SEQADV 3LXX MSE A 2 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX HIS A 3 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX HIS A 4 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX HIS A 5 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX HIS A 6 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX HIS A 7 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX HIS A 8 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX SER A 9 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX SER A 10 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX GLY A 11 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX ARG A 12 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX GLU A 13 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX ASN A 14 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX LEU A 15 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX TYR A 16 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX PHE A 17 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX GLN A 18 UNP Q9NUV9 EXPRESSION TAG SEQADV 3LXX GLY A 19 UNP Q9NUV9 EXPRESSION TAG SEQRES 1 A 239 MSE HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 239 LEU TYR PHE GLN GLY GLY PRO GLY ARG GLN GLU PRO ARG SEQRES 3 A 239 ASN SER GLN LEU ARG ILE VAL LEU VAL GLY LYS THR GLY SEQRES 4 A 239 ALA GLY LYS SER ALA THR GLY ASN SER ILE LEU GLY ARG SEQRES 5 A 239 LYS VAL PHE HIS SER GLY THR ALA ALA LYS SER ILE THR SEQRES 6 A 239 LYS LYS CYS GLU LYS ARG SER SER SER TRP LYS GLU THR SEQRES 7 A 239 GLU LEU VAL VAL VAL ASP THR PRO GLY ILE PHE ASP THR SEQRES 8 A 239 GLU VAL PRO ASN ALA GLU THR SER LYS GLU ILE ILE ARG SEQRES 9 A 239 CYS ILE LEU LEU THR SER PRO GLY PRO HIS ALA LEU LEU SEQRES 10 A 239 LEU VAL VAL PRO LEU GLY ARG TYR THR GLU GLU GLU HIS SEQRES 11 A 239 LYS ALA THR GLU LYS ILE LEU LYS MSE PHE GLY GLU ARG SEQRES 12 A 239 ALA ARG SER PHE MSE ILE LEU ILE PHE THR ARG LYS ASP SEQRES 13 A 239 ASP LEU GLY ASP THR ASN LEU HIS ASP TYR LEU ARG GLU SEQRES 14 A 239 ALA PRO GLU ASP ILE GLN ASP LEU MSE ASP ILE PHE GLY SEQRES 15 A 239 ASP ARG TYR CYS ALA LEU ASN ASN LYS ALA THR GLY ALA SEQRES 16 A 239 GLU GLN GLU ALA GLN ARG ALA GLN LEU LEU GLY LEU ILE SEQRES 17 A 239 GLN ARG VAL VAL ARG GLU ASN LYS GLU GLY CYS TYR THR SEQRES 18 A 239 ASN ARG MSE TYR GLN ARG ALA GLU GLU GLU ILE GLN LYS SEQRES 19 A 239 GLN THR GLN ALA MSE MODRES 3LXX MSE A 140 MET SELENOMETHIONINE MODRES 3LXX MSE A 149 MET SELENOMETHIONINE MODRES 3LXX MSE A 179 MET SELENOMETHIONINE HET MSE A 140 8 HET MSE A 149 8 HET MSE A 179 8 HET GDP A 401 28 HET MG A 402 1 HET UNX A 1 1 HET UNX A 241 1 HETNAM MSE SELENOMETHIONINE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 UNX 2(X) FORMUL 6 HOH *17(H2 O) HELIX 1 1 GLY A 42 GLY A 52 1 11 HELIX 2 2 ASN A 96 THR A 110 1 15 HELIX 3 3 GLU A 128 ARG A 146 1 19 HELIX 4 4 ARG A 155 LEU A 159 5 5 HELIX 5 5 PRO A 172 GLY A 183 1 12 HELIX 6 6 THR A 194 ASN A 216 1 23 SHEET 1 A 6 GLU A 70 TRP A 76 0 SHEET 2 A 6 THR A 79 ASP A 85 -1 O THR A 79 N TRP A 76 SHEET 3 A 6 GLN A 30 VAL A 36 1 N ILE A 33 O VAL A 82 SHEET 4 A 6 ALA A 116 PRO A 122 1 O LEU A 118 N VAL A 36 SHEET 5 A 6 MSE A 149 THR A 154 1 O ILE A 152 N LEU A 119 SHEET 6 A 6 TYR A 186 ALA A 188 1 O CYS A 187 N PHE A 153 SSBOND 1 CYS A 69 CYS A 106 1555 1555 1.98 LINK C LYS A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N PHE A 141 1555 1555 1.33 LINK C PHE A 148 N MSE A 149 1555 1555 1.34 LINK C MSE A 149 N ILE A 150 1555 1555 1.32 LINK C LEU A 178 N MSE A 179 1555 1555 1.32 LINK C MSE A 179 N ASP A 180 1555 1555 1.33 LINK MG MG A 402 O HOH A 245 1555 1555 2.00 LINK O3B GDP A 401 MG MG A 402 1555 1555 2.08 LINK OG SER A 44 MG MG A 402 1555 1555 2.12 LINK MG MG A 402 O HOH A 244 1555 1555 2.14 LINK OG1 THR A 66 MG MG A 402 1555 1555 2.22 LINK MG MG A 402 O HOH A 243 1555 1555 2.33 CISPEP 1 SER A 111 PRO A 112 0 -3.99 SITE 1 AC1 18 THR A 39 GLY A 40 ALA A 41 GLY A 42 SITE 2 AC1 18 LYS A 43 SER A 44 ALA A 45 SER A 58 SITE 3 AC1 18 ARG A 155 ASP A 157 LEU A 189 ASN A 190 SITE 4 AC1 18 ASN A 191 LYS A 192 HOH A 243 HOH A 244 SITE 5 AC1 18 HOH A 245 MG A 402 SITE 1 AC2 6 SER A 44 THR A 66 HOH A 243 HOH A 244 SITE 2 AC2 6 HOH A 245 GDP A 401 CRYST1 41.266 102.663 100.555 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009945 0.00000