HEADER SIGNALING PROTEIN 26-FEB-10 3LY8 TITLE CRYSTAL STRUCTURE OF MUTANT D471E OF THE PERIPLASMIC DOMAIN OF CADC COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ACTIVATOR CADC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 188-512; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 511145; SOURCE 4 STRAIN: MG1655; SOURCE 5 GENE: B4133, CADC, JW4094; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS ALPHA/BETA DOMAIN, ALPHA DOMAIN, ACTIVATOR, DNA-BINDING, MEMBRANE, KEYWDS 2 TRANSCRIPTION REGULATION, TRANSMEMBRANE, TWO-COMPONENT REGULATORY KEYWDS 3 SYSTEM, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.EICHINGER,A.SKERRA REVDAT 5 06-SEP-23 3LY8 1 REMARK REVDAT 4 13-OCT-21 3LY8 1 SEQADV REVDAT 3 06-APR-11 3LY8 1 JRNL REVDAT 2 23-FEB-11 3LY8 1 JRNL REVDAT 1 09-FEB-11 3LY8 0 JRNL AUTH A.EICHINGER,I.HANEBURGER,C.KOLLER,K.JUNG,A.SKERRA JRNL TITL CRYSTAL STRUCTURE OF THE SENSORY DOMAIN OF ESCHERICHIA COLI JRNL TITL 2 CADC, A MEMBER OF THE TOXR-LIKE PROTEIN FAMILY. JRNL REF PROTEIN SCI. V. 20 656 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21308846 JRNL DOI 10.1002/PRO.594 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.713 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2617 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3554 ; 1.300 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 4.921 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;35.609 ;25.242 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;13.828 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.385 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1971 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1612 ; 0.883 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2607 ; 1.616 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1005 ; 2.448 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 947 ; 3.967 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000057879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33613 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.897 REMARK 200 RESOLUTION RANGE LOW (A) : 72.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LY7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M AMMONIUM SULFATE, 5% (V/V) 2 REMARK 280 -PROPANOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.49700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.99400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.74550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 166.24250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.24850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.49700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 132.99400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 166.24250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 99.74550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.24850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -41.81500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 72.42570 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.24850 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 48 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 517 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 GLY A 143 REMARK 465 MET A 144 REMARK 465 LYS A 145 REMARK 465 GLU A 146 REMARK 465 THR A 147 REMARK 465 ALA A 148 REMARK 465 ALA A 149 REMARK 465 ALA A 150 REMARK 465 LYS A 151 REMARK 465 PHE A 152 REMARK 465 GLU A 153 REMARK 465 ARG A 154 REMARK 465 GLN A 155 REMARK 465 HIS A 156 REMARK 465 MET A 157 REMARK 465 ASP A 158 REMARK 465 SER A 159 REMARK 465 PRO A 160 REMARK 465 ASP A 161 REMARK 465 LEU A 162 REMARK 465 GLY A 163 REMARK 465 THR A 164 REMARK 465 ASP A 165 REMARK 465 ASP A 166 REMARK 465 ASP A 167 REMARK 465 ASP A 168 REMARK 465 LYS A 169 REMARK 465 ALA A 170 REMARK 465 MET A 171 REMARK 465 ALA A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 HIS A 182 REMARK 465 ILE A 183 REMARK 465 GLU A 184 REMARK 465 GLY A 185 REMARK 465 ARG A 186 REMARK 465 HIS A 187 REMARK 465 SER A 188 REMARK 465 GLU A 512 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 207 REMARK 475 CYS A 208 REMARK 475 ASN A 209 REMARK 475 SER A 210 REMARK 475 TRP A 211 REMARK 475 SER A 212 REMARK 475 SER A 213 REMARK 475 PRO A 214 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 189 CE NZ REMARK 480 SER A 190 CB OG REMARK 480 ARG A 191 CB CG CD NE CZ NH1 NH2 REMARK 480 ASN A 205 CG OD1 ND2 REMARK 480 LYS A 206 CG CD CE NZ REMARK 480 TYR A 215 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLN A 216 CG CD OE1 NE2 REMARK 480 ASN A 246 CB CG OD1 ND2 REMARK 480 ASP A 248 CG OD1 OD2 REMARK 480 ARG A 265 CD NE CZ NH1 NH2 REMARK 480 ARG A 268 CD NE CZ NH1 NH2 REMARK 480 GLN A 271 CG CD OE1 NE2 REMARK 480 LYS A 277 NZ REMARK 480 ARG A 291 CD NE CZ NH1 NH2 REMARK 480 LYS A 312 CD CE NZ REMARK 480 GLN A 342 OE1 NE2 REMARK 480 LYS A 353 CE NZ REMARK 480 GLN A 367 CD OE1 NE2 REMARK 480 GLU A 394 CG CD OE1 OE2 REMARK 480 LYS A 395 CD CE NZ REMARK 480 GLN A 396 CD OE1 NE2 REMARK 480 ASN A 414 OD1 ND2 REMARK 480 ASN A 415 CG OD1 ND2 REMARK 480 LYS A 432 CE NZ REMARK 480 ARG A 467 NE CZ NH1 NH2 REMARK 480 LYS A 507 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 209 -46.03 137.27 REMARK 500 SER A 210 -4.26 137.09 REMARK 500 TRP A 211 -89.62 -155.45 REMARK 500 SER A 212 168.87 155.81 REMARK 500 SER A 213 37.26 93.16 REMARK 500 PRO A 214 41.57 -95.22 REMARK 500 TYR A 215 -42.12 -151.15 REMARK 500 ASN A 296 102.67 37.15 REMARK 500 MET A 465 72.69 -116.89 REMARK 500 ILE A 493 -52.32 73.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LYA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF CADC IN THE PRESENCE REMARK 900 OF K2RECL6 REMARK 900 RELATED ID: 3LY7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF CADC REMARK 900 RELATED ID: 3LY9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUTANT D471N OF THE PERIPLASMIC DOMAIN OF CADC DBREF 3LY8 A 188 512 UNP P23890 CADC_ECOLI 188 512 SEQADV 3LY8 GLY A 141 UNP P23890 EXPRESSION TAG SEQADV 3LY8 SER A 142 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLY A 143 UNP P23890 EXPRESSION TAG SEQADV 3LY8 MET A 144 UNP P23890 EXPRESSION TAG SEQADV 3LY8 LYS A 145 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLU A 146 UNP P23890 EXPRESSION TAG SEQADV 3LY8 THR A 147 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ALA A 148 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ALA A 149 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ALA A 150 UNP P23890 EXPRESSION TAG SEQADV 3LY8 LYS A 151 UNP P23890 EXPRESSION TAG SEQADV 3LY8 PHE A 152 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLU A 153 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ARG A 154 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLN A 155 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 156 UNP P23890 EXPRESSION TAG SEQADV 3LY8 MET A 157 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ASP A 158 UNP P23890 EXPRESSION TAG SEQADV 3LY8 SER A 159 UNP P23890 EXPRESSION TAG SEQADV 3LY8 PRO A 160 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ASP A 161 UNP P23890 EXPRESSION TAG SEQADV 3LY8 LEU A 162 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLY A 163 UNP P23890 EXPRESSION TAG SEQADV 3LY8 THR A 164 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ASP A 165 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ASP A 166 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ASP A 167 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ASP A 168 UNP P23890 EXPRESSION TAG SEQADV 3LY8 LYS A 169 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ALA A 170 UNP P23890 EXPRESSION TAG SEQADV 3LY8 MET A 171 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ALA A 172 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 173 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 174 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 175 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 176 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 177 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 178 UNP P23890 EXPRESSION TAG SEQADV 3LY8 SER A 179 UNP P23890 EXPRESSION TAG SEQADV 3LY8 SER A 180 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLY A 181 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 182 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ILE A 183 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLU A 184 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLY A 185 UNP P23890 EXPRESSION TAG SEQADV 3LY8 ARG A 186 UNP P23890 EXPRESSION TAG SEQADV 3LY8 HIS A 187 UNP P23890 EXPRESSION TAG SEQADV 3LY8 GLU A 471 UNP P23890 ASP 471 ENGINEERED MUTATION SEQRES 1 A 372 GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE GLU SEQRES 2 A 372 ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR ASP ASP SEQRES 3 A 372 ASP ASP LYS ALA MET ALA HIS HIS HIS HIS HIS HIS SER SEQRES 4 A 372 SER GLY HIS ILE GLU GLY ARG HIS SER LYS SER ARG ILE SEQRES 5 A 372 LEU LEU ASN PRO ARG ASP ILE ASP ILE ASN MET VAL ASN SEQRES 6 A 372 LYS SER CYS ASN SER TRP SER SER PRO TYR GLN LEU SER SEQRES 7 A 372 TYR ALA ILE GLY VAL GLY ASP LEU VAL ALA THR SER LEU SEQRES 8 A 372 ASN THR PHE SER THR PHE MET VAL HIS ASP LYS ILE ASN SEQRES 9 A 372 TYR ASN ILE ASP GLU PRO SER SER SER GLY LYS THR LEU SEQRES 10 A 372 SER ILE ALA PHE VAL ASN GLN ARG GLN TYR ARG ALA GLN SEQRES 11 A 372 GLN CYS PHE MET SER ILE LYS LEU VAL ASP ASN ALA ASP SEQRES 12 A 372 GLY SER THR MET LEU ASP LYS ARG TYR VAL ILE THR ASN SEQRES 13 A 372 GLY ASN GLN LEU ALA ILE GLN ASN ASP LEU LEU GLU SER SEQRES 14 A 372 LEU SER LYS ALA LEU ASN GLN PRO TRP PRO GLN ARG MET SEQRES 15 A 372 GLN GLU THR LEU GLN LYS ILE LEU PRO HIS ARG GLY ALA SEQRES 16 A 372 LEU LEU THR ASN PHE TYR GLN ALA HIS ASP TYR LEU LEU SEQRES 17 A 372 HIS GLY ASP ASP LYS SER LEU ASN ARG ALA SER GLU LEU SEQRES 18 A 372 LEU GLY GLU ILE VAL GLN SER SER PRO GLU PHE THR TYR SEQRES 19 A 372 ALA ARG ALA GLU LYS ALA LEU VAL ASP ILE VAL ARG HIS SEQRES 20 A 372 SER GLN HIS PRO LEU ASP GLU LYS GLN LEU ALA ALA LEU SEQRES 21 A 372 ASN THR GLU ILE ASP ASN ILE VAL THR LEU PRO GLU LEU SEQRES 22 A 372 ASN ASN LEU SER ILE ILE TYR GLN ILE LYS ALA VAL SER SEQRES 23 A 372 ALA LEU VAL LYS GLY LYS THR ASP GLU SER TYR GLN ALA SEQRES 24 A 372 ILE ASN THR GLY ILE ASP LEU GLU MET SER TRP LEU ASN SEQRES 25 A 372 TYR VAL LEU LEU GLY LYS VAL TYR GLU MET LYS GLY MET SEQRES 26 A 372 ASN ARG GLU ALA ALA GLU ALA TYR LEU THR ALA PHE ASN SEQRES 27 A 372 LEU ARG PRO GLY ALA ASN THR LEU TYR TRP ILE GLU ASN SEQRES 28 A 372 GLY ILE PHE GLN THR SER VAL PRO TYR VAL VAL PRO TYR SEQRES 29 A 372 LEU ASP LYS PHE LEU ALA SER GLU FORMUL 2 HOH *234(H2 O) HELIX 1 1 TYR A 215 SER A 235 1 21 HELIX 2 2 ASN A 298 LEU A 314 1 17 HELIX 3 3 PRO A 319 LEU A 330 1 12 HELIX 4 4 ARG A 333 ALA A 335 5 3 HELIX 5 5 LEU A 336 GLY A 350 1 15 HELIX 6 6 ASP A 351 SER A 369 1 19 HELIX 7 7 PHE A 372 HIS A 390 1 19 HELIX 8 8 ASP A 393 THR A 409 1 17 HELIX 9 9 LEU A 410 ASN A 414 5 5 HELIX 10 10 LEU A 416 GLY A 431 1 16 HELIX 11 11 LYS A 432 GLU A 447 1 16 HELIX 12 12 SER A 449 LYS A 463 1 15 HELIX 13 13 MET A 465 ARG A 480 1 16 HELIX 14 14 GLY A 482 GLY A 492 1 11 HELIX 15 15 SER A 497 VAL A 502 1 6 HELIX 16 16 VAL A 502 SER A 511 1 10 SHEET 1 A 5 MET A 238 ASP A 241 0 SHEET 2 A 5 ASN A 195 VAL A 204 1 N ARG A 197 O MET A 238 SHEET 3 A 5 SER A 253 VAL A 262 1 O ILE A 259 N VAL A 204 SHEET 4 A 5 PHE A 273 ASP A 280 -1 O SER A 275 N ALA A 260 SHEET 5 A 5 THR A 286 TYR A 292 -1 O MET A 287 N LEU A 278 SSBOND 1 CYS A 208 CYS A 272 1555 1555 2.03 CISPEP 1 SER A 212 SER A 213 0 0.03 CRYST1 83.630 83.630 199.491 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011957 0.006904 0.000000 0.00000 SCALE2 0.000000 0.013807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005013 0.00000