HEADER LYASE 01-MAR-10 3LZA TITLE CRYSTAL STRUCTURE OF PUTATIVE SNOAL-LIKE POLYKETIDE CYCLASE TITLE 2 (YP_563807.1) FROM SHEWANELLA DENITRIFICANS OS-217 AT 1.70 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SNOAL-LIKE POLYKETIDE CYCLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 318161; SOURCE 4 STRAIN: OS217 / ATCC BAA-1090 / DSM 15013; SOURCE 5 GENE: YP_563807.1, SDEN_2805; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3LZA 1 SEQADV REVDAT 4 17-JUL-19 3LZA 1 REMARK LINK REVDAT 3 08-NOV-17 3LZA 1 REMARK REVDAT 2 13-JUL-11 3LZA 1 VERSN REVDAT 1 12-MAY-10 3LZA 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE SNOAL-LIKE POLYKETIDE CYCLASE JRNL TITL 2 (YP_563807.1) FROM SHEWANELLA DENITRIFICANS OS-217 AT 1.70 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 57131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 570 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 16.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.40000 REMARK 3 B22 (A**2) : -1.74000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.23000 REMARK 3 B13 (A**2) : 0.55000 REMARK 3 B23 (A**2) : -0.23000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.119 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4708 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3189 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6413 ; 1.501 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7819 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 597 ; 5.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;37.515 ;24.612 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 838 ;13.021 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.530 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5294 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 963 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2800 ; 0.813 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1133 ; 0.262 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4581 ; 1.351 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1908 ; 2.358 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1805 ; 3.659 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -40.8370 3.9310 33.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0752 REMARK 3 T33: 0.0505 T12: -0.0055 REMARK 3 T13: -0.0233 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.8020 L22: 1.4549 REMARK 3 L33: 0.8534 L12: 0.2258 REMARK 3 L13: -0.3218 L23: -0.3000 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: -0.0422 S13: 0.0492 REMARK 3 S21: 0.0674 S22: 0.0119 S23: 0.0057 REMARK 3 S31: -0.0827 S32: 0.0013 S33: 0.0066 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): -40.0950 -23.0200 37.8110 REMARK 3 T TENSOR REMARK 3 T11: -0.0053 T22: 0.0667 REMARK 3 T33: 0.0553 T12: -0.0129 REMARK 3 T13: -0.0135 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.3877 L22: 1.2613 REMARK 3 L33: 1.2136 L12: -0.0211 REMARK 3 L13: 0.1381 L23: 0.0539 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: -0.0158 S13: -0.0449 REMARK 3 S21: 0.0090 S22: 0.0001 S23: 0.0445 REMARK 3 S31: 0.0309 S32: -0.0185 S33: 0.0100 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 22 C 157 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9250 -4.4350 61.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0709 REMARK 3 T33: 0.0601 T12: -0.0014 REMARK 3 T13: 0.0062 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.5141 L22: 1.4657 REMARK 3 L33: 1.8813 L12: 0.0032 REMARK 3 L13: 0.3490 L23: 0.3410 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.0322 S13: -0.0413 REMARK 3 S21: 0.0273 S22: -0.0133 S23: 0.0335 REMARK 3 S31: 0.2061 S32: -0.0157 S33: 0.0159 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 21 D 157 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9870 21.7970 67.2550 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: 0.0693 REMARK 3 T33: 0.0563 T12: -0.0157 REMARK 3 T13: -0.0271 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.6694 L22: 1.2297 REMARK 3 L33: 1.3187 L12: -0.0681 REMARK 3 L13: -0.3439 L23: -0.1800 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0059 S13: 0.0268 REMARK 3 S21: 0.0227 S22: -0.0280 S23: -0.0817 REMARK 3 S31: -0.1095 S32: 0.0421 S33: 0.0285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 4 REMARK 4 3LZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97951 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.599 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : 1.990 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8000M TRI-AMMONIUM CITRATE, NO REMARK 280 BUFFER PH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LYS A 18 REMARK 465 VAL A 19 REMARK 465 GLY A 20 REMARK 465 GLY B 0 REMARK 465 LYS B 18 REMARK 465 VAL B 19 REMARK 465 GLY B 20 REMARK 465 GLY C 0 REMARK 465 LYS C 18 REMARK 465 VAL C 19 REMARK 465 GLY C 20 REMARK 465 ASP C 21 REMARK 465 GLY D 0 REMARK 465 LYS D 18 REMARK 465 VAL D 19 REMARK 465 GLY D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 21 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 67 O HOH B 420 1565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396443 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 18-157) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3LZA A 18 157 UNP Q12KE2 Q12KE2_SHEDO 18 157 DBREF 3LZA B 18 157 UNP Q12KE2 Q12KE2_SHEDO 18 157 DBREF 3LZA C 18 157 UNP Q12KE2 Q12KE2_SHEDO 18 157 DBREF 3LZA D 18 157 UNP Q12KE2 Q12KE2_SHEDO 18 157 SEQADV 3LZA GLY A 0 UNP Q12KE2 EXPRESSION TAG SEQADV 3LZA GLY B 0 UNP Q12KE2 EXPRESSION TAG SEQADV 3LZA GLY C 0 UNP Q12KE2 EXPRESSION TAG SEQADV 3LZA GLY D 0 UNP Q12KE2 EXPRESSION TAG SEQRES 1 A 141 GLY LYS VAL GLY ASP ARG PRO ILE GLU GLN GLN LEU ALA SEQRES 2 A 141 LEU GLY TYR ILE LYS ALA LEU THR GLU HIS ASP TYR GLN SEQRES 3 A 141 THR LEU SER LYS TYR TYR ASN ARG ASP SER VAL PHE TYR SEQRES 4 A 141 ASP LYS THR ALA ASP THR LYS TYR ILE GLY THR ARG SER SEQRES 5 A 141 ILE ILE ALA PHE LEU GLN ARG SER HIS GLU GLY VAL LEU SEQRES 6 A 141 GLU PHE ASP PHE ASN ILE GLU HIS MSE PHE ASN THR GLY SEQRES 7 A 141 PRO LEU VAL VAL MSE ILE GLY ASN TYR HIS LEU ARG GLY SEQRES 8 A 141 PRO GLY GLU GLN PHE GLY LYS PRO GLY LYS ILE ILE ASP SEQRES 9 A 141 ILE ALA ILE PRO GLY VAL THR THR LEU LYS PHE ASP PRO SEQRES 10 A 141 ASN THR GLN ARG LEU THR GLU GLN VAL ASP LEU MSE ASP SEQRES 11 A 141 TYR GLN THR MSE SER ASP GLN LEU GLN SER GLN SEQRES 1 B 141 GLY LYS VAL GLY ASP ARG PRO ILE GLU GLN GLN LEU ALA SEQRES 2 B 141 LEU GLY TYR ILE LYS ALA LEU THR GLU HIS ASP TYR GLN SEQRES 3 B 141 THR LEU SER LYS TYR TYR ASN ARG ASP SER VAL PHE TYR SEQRES 4 B 141 ASP LYS THR ALA ASP THR LYS TYR ILE GLY THR ARG SER SEQRES 5 B 141 ILE ILE ALA PHE LEU GLN ARG SER HIS GLU GLY VAL LEU SEQRES 6 B 141 GLU PHE ASP PHE ASN ILE GLU HIS MSE PHE ASN THR GLY SEQRES 7 B 141 PRO LEU VAL VAL MSE ILE GLY ASN TYR HIS LEU ARG GLY SEQRES 8 B 141 PRO GLY GLU GLN PHE GLY LYS PRO GLY LYS ILE ILE ASP SEQRES 9 B 141 ILE ALA ILE PRO GLY VAL THR THR LEU LYS PHE ASP PRO SEQRES 10 B 141 ASN THR GLN ARG LEU THR GLU GLN VAL ASP LEU MSE ASP SEQRES 11 B 141 TYR GLN THR MSE SER ASP GLN LEU GLN SER GLN SEQRES 1 C 141 GLY LYS VAL GLY ASP ARG PRO ILE GLU GLN GLN LEU ALA SEQRES 2 C 141 LEU GLY TYR ILE LYS ALA LEU THR GLU HIS ASP TYR GLN SEQRES 3 C 141 THR LEU SER LYS TYR TYR ASN ARG ASP SER VAL PHE TYR SEQRES 4 C 141 ASP LYS THR ALA ASP THR LYS TYR ILE GLY THR ARG SER SEQRES 5 C 141 ILE ILE ALA PHE LEU GLN ARG SER HIS GLU GLY VAL LEU SEQRES 6 C 141 GLU PHE ASP PHE ASN ILE GLU HIS MSE PHE ASN THR GLY SEQRES 7 C 141 PRO LEU VAL VAL MSE ILE GLY ASN TYR HIS LEU ARG GLY SEQRES 8 C 141 PRO GLY GLU GLN PHE GLY LYS PRO GLY LYS ILE ILE ASP SEQRES 9 C 141 ILE ALA ILE PRO GLY VAL THR THR LEU LYS PHE ASP PRO SEQRES 10 C 141 ASN THR GLN ARG LEU THR GLU GLN VAL ASP LEU MSE ASP SEQRES 11 C 141 TYR GLN THR MSE SER ASP GLN LEU GLN SER GLN SEQRES 1 D 141 GLY LYS VAL GLY ASP ARG PRO ILE GLU GLN GLN LEU ALA SEQRES 2 D 141 LEU GLY TYR ILE LYS ALA LEU THR GLU HIS ASP TYR GLN SEQRES 3 D 141 THR LEU SER LYS TYR TYR ASN ARG ASP SER VAL PHE TYR SEQRES 4 D 141 ASP LYS THR ALA ASP THR LYS TYR ILE GLY THR ARG SER SEQRES 5 D 141 ILE ILE ALA PHE LEU GLN ARG SER HIS GLU GLY VAL LEU SEQRES 6 D 141 GLU PHE ASP PHE ASN ILE GLU HIS MSE PHE ASN THR GLY SEQRES 7 D 141 PRO LEU VAL VAL MSE ILE GLY ASN TYR HIS LEU ARG GLY SEQRES 8 D 141 PRO GLY GLU GLN PHE GLY LYS PRO GLY LYS ILE ILE ASP SEQRES 9 D 141 ILE ALA ILE PRO GLY VAL THR THR LEU LYS PHE ASP PRO SEQRES 10 D 141 ASN THR GLN ARG LEU THR GLU GLN VAL ASP LEU MSE ASP SEQRES 11 D 141 TYR GLN THR MSE SER ASP GLN LEU GLN SER GLN MODRES 3LZA MSE A 90 MET SELENOMETHIONINE MODRES 3LZA MSE A 99 MET SELENOMETHIONINE MODRES 3LZA MSE A 145 MET SELENOMETHIONINE MODRES 3LZA MSE A 150 MET SELENOMETHIONINE MODRES 3LZA MSE B 90 MET SELENOMETHIONINE MODRES 3LZA MSE B 99 MET SELENOMETHIONINE MODRES 3LZA MSE B 145 MET SELENOMETHIONINE MODRES 3LZA MSE B 150 MET SELENOMETHIONINE MODRES 3LZA MSE C 90 MET SELENOMETHIONINE MODRES 3LZA MSE C 99 MET SELENOMETHIONINE MODRES 3LZA MSE C 145 MET SELENOMETHIONINE MODRES 3LZA MSE C 150 MET SELENOMETHIONINE MODRES 3LZA MSE D 90 MET SELENOMETHIONINE MODRES 3LZA MSE D 99 MET SELENOMETHIONINE MODRES 3LZA MSE D 145 MET SELENOMETHIONINE MODRES 3LZA MSE D 150 MET SELENOMETHIONINE HET MSE A 90 13 HET MSE A 99 8 HET MSE A 145 8 HET MSE A 150 8 HET MSE B 90 13 HET MSE B 99 8 HET MSE B 145 8 HET MSE B 150 8 HET MSE C 90 13 HET MSE C 99 8 HET MSE C 145 8 HET MSE C 150 8 HET MSE D 90 13 HET MSE D 99 8 HET MSE D 145 8 HET MSE D 150 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *570(H2 O) HELIX 1 1 PRO A 23 GLU A 38 1 16 HELIX 2 2 ASP A 40 LYS A 46 1 7 HELIX 3 3 GLY A 65 GLU A 78 1 14 HELIX 4 4 GLU A 110 GLY A 113 5 4 HELIX 5 5 ASP A 146 SER A 156 1 11 HELIX 6 6 PRO B 23 GLU B 38 1 16 HELIX 7 7 ASP B 40 LYS B 46 1 7 HELIX 8 8 GLY B 65 GLU B 78 1 14 HELIX 9 9 GLU B 110 GLY B 113 5 4 HELIX 10 10 ASP B 146 GLN B 155 1 10 HELIX 11 11 PRO C 23 GLU C 38 1 16 HELIX 12 12 ASP C 40 LYS C 46 1 7 HELIX 13 13 GLY C 65 HIS C 77 1 13 HELIX 14 14 GLU C 110 GLY C 113 5 4 HELIX 15 15 ASP C 146 SER C 156 1 11 HELIX 16 16 PRO D 23 GLU D 38 1 16 HELIX 17 17 ASP D 40 LYS D 46 1 7 HELIX 18 18 GLY D 65 HIS D 77 1 13 HELIX 19 19 GLU D 110 GLY D 113 5 4 HELIX 20 20 ASP D 146 GLN D 155 1 10 SHEET 1 A 6 THR A 61 ILE A 64 0 SHEET 2 A 6 VAL A 53 ASP A 56 -1 N ASP A 56 O THR A 61 SHEET 3 A 6 LEU A 138 MSE A 145 1 O GLN A 141 N TYR A 55 SHEET 4 A 6 LYS A 114 PHE A 131 -1 N LYS A 130 O THR A 139 SHEET 5 A 6 LEU A 96 GLY A 109 -1 N VAL A 97 O LEU A 129 SHEET 6 A 6 GLU A 82 THR A 93 -1 N PHE A 91 O VAL A 98 SHEET 1 B 6 THR B 61 ILE B 64 0 SHEET 2 B 6 VAL B 53 ASP B 56 -1 N PHE B 54 O TYR B 63 SHEET 3 B 6 LEU B 138 MSE B 145 1 O GLN B 141 N TYR B 55 SHEET 4 B 6 LYS B 114 PHE B 131 -1 N LYS B 130 O THR B 139 SHEET 5 B 6 LEU B 96 GLY B 109 -1 N GLY B 109 O LYS B 114 SHEET 6 B 6 GLU B 82 THR B 93 -1 N HIS B 89 O ILE B 100 SHEET 1 C 6 THR C 61 ILE C 64 0 SHEET 2 C 6 VAL C 53 ASP C 56 -1 N PHE C 54 O TYR C 63 SHEET 3 C 6 LEU C 138 MSE C 145 1 O GLN C 141 N TYR C 55 SHEET 4 C 6 LYS C 114 PHE C 131 -1 N LYS C 130 O THR C 139 SHEET 5 C 6 LEU C 96 GLY C 109 -1 N GLY C 107 O ILE C 119 SHEET 6 C 6 GLU C 82 THR C 93 -1 N PHE C 91 O VAL C 98 SHEET 1 D 6 THR D 61 ILE D 64 0 SHEET 2 D 6 VAL D 53 ASP D 56 -1 N PHE D 54 O TYR D 63 SHEET 3 D 6 LEU D 138 MSE D 145 1 O GLN D 141 N VAL D 53 SHEET 4 D 6 ILE D 118 PHE D 131 -1 N LYS D 130 O THR D 139 SHEET 5 D 6 LEU D 96 PRO D 108 -1 N VAL D 97 O LEU D 129 SHEET 6 D 6 GLU D 82 THR D 93 -1 N HIS D 89 O ILE D 100 LINK C HIS A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N PHE A 91 1555 1555 1.34 LINK C VAL A 98 N MSE A 99 1555 1555 1.32 LINK C MSE A 99 N ILE A 100 1555 1555 1.34 LINK C LEU A 144 N MSE A 145 1555 1555 1.34 LINK C MSE A 145 N ASP A 146 1555 1555 1.34 LINK C THR A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N SER A 151 1555 1555 1.33 LINK C HIS B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N PHE B 91 1555 1555 1.33 LINK C VAL B 98 N MSE B 99 1555 1555 1.32 LINK C MSE B 99 N ILE B 100 1555 1555 1.33 LINK C LEU B 144 N MSE B 145 1555 1555 1.33 LINK C MSE B 145 N ASP B 146 1555 1555 1.33 LINK C THR B 149 N MSE B 150 1555 1555 1.34 LINK C MSE B 150 N SER B 151 1555 1555 1.33 LINK C HIS C 89 N MSE C 90 1555 1555 1.33 LINK C MSE C 90 N PHE C 91 1555 1555 1.32 LINK C VAL C 98 N MSE C 99 1555 1555 1.34 LINK C MSE C 99 N ILE C 100 1555 1555 1.32 LINK C LEU C 144 N MSE C 145 1555 1555 1.33 LINK C MSE C 145 N ASP C 146 1555 1555 1.33 LINK C THR C 149 N MSE C 150 1555 1555 1.33 LINK C MSE C 150 N SER C 151 1555 1555 1.33 LINK C HIS D 89 N MSE D 90 1555 1555 1.32 LINK C MSE D 90 N PHE D 91 1555 1555 1.32 LINK C VAL D 98 N MSE D 99 1555 1555 1.31 LINK C MSE D 99 N ILE D 100 1555 1555 1.33 LINK C LEU D 144 N MSE D 145 1555 1555 1.33 LINK C MSE D 145 N ASP D 146 1555 1555 1.34 LINK C THR D 149 N MSE D 150 1555 1555 1.34 LINK C MSE D 150 N SER D 151 1555 1555 1.32 CRYST1 45.843 56.510 57.537 90.13 103.27 102.85 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021814 0.004976 0.005433 0.00000 SCALE2 0.000000 0.018151 0.001021 0.00000 SCALE3 0.000000 0.000000 0.017885 0.00000