HEADER OXIDOREDUCTASE 02-MAR-10 3LZX TITLE CRYSTAL STRUCTURE OF FERREDOXIN-NADP+ OXIDOREDUCTASE FROM BACILLUS TITLE 2 SUBTILIS (FORM II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN--NADP REDUCTASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FERREDOXIN-NADP+ OXIDOREDUCTASE, FD-NADP+ REDUCTASE 2, FNR COMPND 5 2; COMPND 6 EC: 1.18.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETBLUE-1 KEYWDS FERREDOXIN REDUCTASE, FAD, NADPH, FLAVOPROTEIN, NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KOMORI,D.SEO,T.SAKURAI,Y.HIGUCHI REVDAT 2 01-NOV-23 3LZX 1 REMARK LINK REVDAT 1 08-DEC-10 3LZX 0 JRNL AUTH H.KOMORI,D.SEO,T.SAKURAI,Y.HIGUCHI JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF BACILLUS SUBTILIS JRNL TITL 2 FERREDOXIN-NADP(+) OXIDOREDUCTASE AND THE STRUCTURAL BASIS JRNL TITL 3 FOR ITS SUBSTRATE SELECTIVITY JRNL REF PROTEIN SCI. V. 19 2279 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20878669 JRNL DOI 10.1002/PRO.508 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 204 REMARK 3 SOLVENT ATOMS : 516 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5456 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3628 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7412 ; 1.325 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8794 ; 0.810 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 5.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;38.380 ;25.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 936 ;12.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 832 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5950 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1016 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 962 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3894 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2574 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2796 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 470 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.144 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.067 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3258 ; 0.513 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1344 ; 0.107 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5246 ; 0.965 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2270 ; 1.505 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2166 ; 2.423 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 125 REMARK 3 RESIDUE RANGE : A 250 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9546 -11.5570 25.5707 REMARK 3 T TENSOR REMARK 3 T11: -0.0102 T22: -0.0275 REMARK 3 T33: -0.0327 T12: -0.0072 REMARK 3 T13: 0.0071 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.9072 L22: 0.5030 REMARK 3 L33: 0.2290 L12: 0.2771 REMARK 3 L13: 0.1068 L23: 0.1120 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.0322 S13: 0.0007 REMARK 3 S21: -0.0095 S22: 0.0277 S23: -0.0103 REMARK 3 S31: 0.0167 S32: 0.0244 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 50.4851 -5.7413 56.6331 REMARK 3 T TENSOR REMARK 3 T11: -0.0156 T22: 0.0041 REMARK 3 T33: -0.1036 T12: -0.0494 REMARK 3 T13: -0.0178 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.8187 L22: 1.5992 REMARK 3 L33: 1.6934 L12: 0.5481 REMARK 3 L13: 0.7523 L23: 0.3122 REMARK 3 S TENSOR REMARK 3 S11: 0.0777 S12: -0.1215 S13: -0.0681 REMARK 3 S21: 0.0718 S22: -0.0834 S23: -0.0486 REMARK 3 S31: 0.1724 S32: -0.1332 S33: 0.0057 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 125 REMARK 3 RESIDUE RANGE : B 250 B 329 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9926 -1.2887 20.4274 REMARK 3 T TENSOR REMARK 3 T11: -0.0477 T22: -0.0448 REMARK 3 T33: 0.0839 T12: -0.0037 REMARK 3 T13: -0.0328 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.0553 L22: 0.5560 REMARK 3 L33: 0.3080 L12: 0.1927 REMARK 3 L13: 0.1973 L23: -0.0875 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: 0.0405 S13: 0.2523 REMARK 3 S21: -0.0247 S22: 0.0073 S23: 0.1913 REMARK 3 S31: 0.0144 S32: -0.0333 S33: 0.0564 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 249 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9769 -25.8482 14.4170 REMARK 3 T TENSOR REMARK 3 T11: -0.0365 T22: -0.0028 REMARK 3 T33: -0.0563 T12: -0.0269 REMARK 3 T13: -0.0206 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.7300 L22: 0.7302 REMARK 3 L33: 1.4261 L12: -0.1428 REMARK 3 L13: 0.7270 L23: -0.1557 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: 0.1118 S13: -0.0499 REMARK 3 S21: 0.0219 S22: 0.0532 S23: 0.0082 REMARK 3 S31: -0.0613 S32: 0.0579 S33: 0.0234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59771 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 26.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LZW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M SODIUM FLUORIDE, 5% REMARK 280 TREHALOSE, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 103.73300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 103.73300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 330 REMARK 465 ASN A 331 REMARK 465 LYS A 332 REMARK 465 GLU B 330 REMARK 465 ASN B 331 REMARK 465 LYS B 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU A 228 NZ LYS A 317 4556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 50 48.19 -147.48 REMARK 500 LYS A 140 -107.15 -107.17 REMARK 500 ASP A 147 -55.33 -126.93 REMARK 500 ASN A 245 74.02 -118.65 REMARK 500 TYR B 50 49.50 -158.34 REMARK 500 LYS B 140 -112.29 -112.31 REMARK 500 ASP B 147 -59.21 -123.43 REMARK 500 ASP B 219 -81.43 -111.56 REMARK 500 THR B 275 -169.40 -78.49 REMARK 500 PRO B 316 -4.58 -55.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A3001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 266 OG REMARK 620 2 ASP A 285 O 126.5 REMARK 620 3 HOH A 346 O 94.0 80.6 REMARK 620 4 HOH A 440 O 99.5 80.4 160.8 REMARK 620 5 HOH A 614 O 103.2 130.2 94.3 95.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B3002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 266 OG REMARK 620 2 ASP B 285 O 135.8 REMARK 620 3 HOH B 349 O 96.6 80.8 REMARK 620 4 HOH B 353 O 92.2 83.1 163.4 REMARK 620 5 HOH B 550 O 106.1 118.1 91.3 99.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 3002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LZW RELATED DB: PDB DBREF 3LZX A 1 332 UNP O05268 FENR2_BACSU 1 332 DBREF 3LZX B 1 332 UNP O05268 FENR2_BACSU 1 332 SEQRES 1 A 332 MET ARG GLU ASP THR LYS VAL TYR ASP ILE THR ILE ILE SEQRES 2 A 332 GLY GLY GLY PRO VAL GLY LEU PHE THR ALA PHE TYR GLY SEQRES 3 A 332 GLY MET ARG GLN ALA SER VAL LYS ILE ILE GLU SER LEU SEQRES 4 A 332 PRO GLN LEU GLY GLY GLN LEU SER ALA LEU TYR PRO GLU SEQRES 5 A 332 LYS TYR ILE TYR ASP VAL ALA GLY PHE PRO LYS ILE ARG SEQRES 6 A 332 ALA GLN GLU LEU ILE ASN ASN LEU LYS GLU GLN MET ALA SEQRES 7 A 332 LYS PHE ASP GLN THR ILE CYS LEU GLU GLN ALA VAL GLU SEQRES 8 A 332 SER VAL GLU LYS GLN ALA ASP GLY VAL PHE LYS LEU VAL SEQRES 9 A 332 THR ASN GLU GLU THR HIS TYR SER LYS THR VAL ILE ILE SEQRES 10 A 332 THR ALA GLY ASN GLY ALA PHE LYS PRO ARG LYS LEU GLU SEQRES 11 A 332 LEU GLU ASN ALA GLU GLN TYR GLU GLY LYS ASN LEU HIS SEQRES 12 A 332 TYR PHE VAL ASP ASP LEU GLN LYS PHE ALA GLY ARG ARG SEQRES 13 A 332 VAL ALA ILE LEU GLY GLY GLY ASP SER ALA VAL ASP TRP SEQRES 14 A 332 ALA LEU MET LEU GLU PRO ILE ALA LYS GLU VAL SER ILE SEQRES 15 A 332 ILE HIS ARG ARG ASP LYS PHE ARG ALA HIS GLU HIS SER SEQRES 16 A 332 VAL GLU ASN LEU HIS ALA SER LYS VAL ASN VAL LEU THR SEQRES 17 A 332 PRO PHE VAL PRO ALA GLU LEU ILE GLY GLU ASP LYS ILE SEQRES 18 A 332 GLU GLN LEU VAL LEU GLU GLU VAL LYS GLY ASP ARG LYS SEQRES 19 A 332 GLU ILE LEU GLU ILE ASP ASP LEU ILE VAL ASN TYR GLY SEQRES 20 A 332 PHE VAL SER SER LEU GLY PRO ILE LYS ASN TRP GLY LEU SEQRES 21 A 332 ASP ILE GLU LYS ASN SER ILE VAL VAL LYS SER THR MET SEQRES 22 A 332 GLU THR ASN ILE GLU GLY PHE PHE ALA ALA GLY ASP ILE SEQRES 23 A 332 CYS THR TYR GLU GLY LYS VAL ASN LEU ILE ALA SER GLY SEQRES 24 A 332 PHE GLY GLU ALA PRO THR ALA VAL ASN ASN ALA LYS ALA SEQRES 25 A 332 TYR MET ASP PRO LYS ALA ARG VAL GLN PRO LEU HIS SER SEQRES 26 A 332 THR SER LEU PHE GLU ASN LYS SEQRES 1 B 332 MET ARG GLU ASP THR LYS VAL TYR ASP ILE THR ILE ILE SEQRES 2 B 332 GLY GLY GLY PRO VAL GLY LEU PHE THR ALA PHE TYR GLY SEQRES 3 B 332 GLY MET ARG GLN ALA SER VAL LYS ILE ILE GLU SER LEU SEQRES 4 B 332 PRO GLN LEU GLY GLY GLN LEU SER ALA LEU TYR PRO GLU SEQRES 5 B 332 LYS TYR ILE TYR ASP VAL ALA GLY PHE PRO LYS ILE ARG SEQRES 6 B 332 ALA GLN GLU LEU ILE ASN ASN LEU LYS GLU GLN MET ALA SEQRES 7 B 332 LYS PHE ASP GLN THR ILE CYS LEU GLU GLN ALA VAL GLU SEQRES 8 B 332 SER VAL GLU LYS GLN ALA ASP GLY VAL PHE LYS LEU VAL SEQRES 9 B 332 THR ASN GLU GLU THR HIS TYR SER LYS THR VAL ILE ILE SEQRES 10 B 332 THR ALA GLY ASN GLY ALA PHE LYS PRO ARG LYS LEU GLU SEQRES 11 B 332 LEU GLU ASN ALA GLU GLN TYR GLU GLY LYS ASN LEU HIS SEQRES 12 B 332 TYR PHE VAL ASP ASP LEU GLN LYS PHE ALA GLY ARG ARG SEQRES 13 B 332 VAL ALA ILE LEU GLY GLY GLY ASP SER ALA VAL ASP TRP SEQRES 14 B 332 ALA LEU MET LEU GLU PRO ILE ALA LYS GLU VAL SER ILE SEQRES 15 B 332 ILE HIS ARG ARG ASP LYS PHE ARG ALA HIS GLU HIS SER SEQRES 16 B 332 VAL GLU ASN LEU HIS ALA SER LYS VAL ASN VAL LEU THR SEQRES 17 B 332 PRO PHE VAL PRO ALA GLU LEU ILE GLY GLU ASP LYS ILE SEQRES 18 B 332 GLU GLN LEU VAL LEU GLU GLU VAL LYS GLY ASP ARG LYS SEQRES 19 B 332 GLU ILE LEU GLU ILE ASP ASP LEU ILE VAL ASN TYR GLY SEQRES 20 B 332 PHE VAL SER SER LEU GLY PRO ILE LYS ASN TRP GLY LEU SEQRES 21 B 332 ASP ILE GLU LYS ASN SER ILE VAL VAL LYS SER THR MET SEQRES 22 B 332 GLU THR ASN ILE GLU GLY PHE PHE ALA ALA GLY ASP ILE SEQRES 23 B 332 CYS THR TYR GLU GLY LYS VAL ASN LEU ILE ALA SER GLY SEQRES 24 B 332 PHE GLY GLU ALA PRO THR ALA VAL ASN ASN ALA LYS ALA SEQRES 25 B 332 TYR MET ASP PRO LYS ALA ARG VAL GLN PRO LEU HIS SER SEQRES 26 B 332 THR SER LEU PHE GLU ASN LYS HET FAD A1000 53 HET NAP A2000 48 HET NA A3001 1 HET FAD B1001 53 HET NAP B2001 48 HET NA B3002 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM NA SODIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 NA 2(NA 1+) FORMUL 9 HOH *516(H2 O) HELIX 1 1 GLY A 16 ARG A 29 1 14 HELIX 2 2 GLY A 43 TYR A 50 1 8 HELIX 3 3 ALA A 66 ALA A 78 1 13 HELIX 4 4 ALA A 134 GLU A 138 5 5 HELIX 5 5 ASP A 148 ALA A 153 5 6 HELIX 6 6 GLY A 163 GLU A 174 1 12 HELIX 7 7 HIS A 192 SER A 202 1 11 HELIX 8 8 LEU A 252 TRP A 258 5 7 HELIX 9 9 LEU A 295 ASP A 315 1 21 HELIX 10 10 HIS A 324 PHE A 329 1 6 HELIX 11 11 GLY B 16 ARG B 29 1 14 HELIX 12 12 GLY B 43 TYR B 50 1 8 HELIX 13 13 ALA B 66 ALA B 78 1 13 HELIX 14 14 ASN B 133 GLU B 138 5 6 HELIX 15 15 ASP B 148 ALA B 153 5 6 HELIX 16 16 GLY B 163 GLU B 174 1 12 HELIX 17 17 HIS B 192 SER B 202 1 11 HELIX 18 18 LEU B 252 TRP B 258 5 7 HELIX 19 19 LEU B 295 ASP B 315 1 21 HELIX 20 20 HIS B 324 PHE B 329 1 6 SHEET 1 A 6 GLN A 82 CYS A 85 0 SHEET 2 A 6 VAL A 33 ILE A 36 1 N ILE A 35 O CYS A 85 SHEET 3 A 6 ARG A 2 ILE A 13 1 N ILE A 12 O LYS A 34 SHEET 4 A 6 GLU A 108 ILE A 117 1 O THR A 109 N ASP A 4 SHEET 5 A 6 PHE A 101 THR A 105 -1 N LEU A 103 O HIS A 110 SHEET 6 A 6 VAL A 90 LYS A 95 -1 N GLU A 91 O VAL A 104 SHEET 1 B 5 GLN A 82 CYS A 85 0 SHEET 2 B 5 VAL A 33 ILE A 36 1 N ILE A 35 O CYS A 85 SHEET 3 B 5 ARG A 2 ILE A 13 1 N ILE A 12 O LYS A 34 SHEET 4 B 5 GLU A 108 ILE A 117 1 O THR A 109 N ASP A 4 SHEET 5 B 5 PHE A 280 ALA A 282 1 O PHE A 281 N VAL A 115 SHEET 1 C 2 TYR A 54 ILE A 55 0 SHEET 2 C 2 ILE A 64 ARG A 65 -1 O ILE A 64 N ILE A 55 SHEET 1 D 2 ALA A 123 PRO A 126 0 SHEET 2 D 2 PHE A 248 SER A 251 -1 O VAL A 249 N LYS A 125 SHEET 1 E 5 LEU A 142 HIS A 143 0 SHEET 2 E 5 ASP A 241 VAL A 244 1 O LEU A 242 N HIS A 143 SHEET 3 E 5 ARG A 156 LEU A 160 1 N LEU A 160 O ILE A 243 SHEET 4 E 5 GLU A 179 ILE A 183 1 O ILE A 183 N ILE A 159 SHEET 5 E 5 ASN A 205 LEU A 207 1 O LEU A 207 N ILE A 182 SHEET 1 F 3 PHE A 210 ILE A 216 0 SHEET 2 F 3 GLN A 223 GLU A 228 -1 O VAL A 225 N ALA A 213 SHEET 3 F 3 LYS A 234 GLU A 238 -1 O GLU A 235 N LEU A 226 SHEET 1 G 3 ILE A 262 GLU A 263 0 SHEET 2 G 3 SER A 266 VAL A 268 -1 O SER A 266 N GLU A 263 SHEET 3 G 3 CYS A 287 THR A 288 1 O THR A 288 N ILE A 267 SHEET 1 H 6 THR B 83 CYS B 85 0 SHEET 2 H 6 VAL B 33 ILE B 36 1 N ILE B 35 O CYS B 85 SHEET 3 H 6 ARG B 2 ILE B 13 1 N ILE B 12 O LYS B 34 SHEET 4 H 6 GLU B 108 ILE B 117 1 O LYS B 113 N TYR B 8 SHEET 5 H 6 PHE B 101 THR B 105 -1 N LEU B 103 O HIS B 110 SHEET 6 H 6 VAL B 90 LYS B 95 -1 N GLU B 94 O LYS B 102 SHEET 1 I 5 THR B 83 CYS B 85 0 SHEET 2 I 5 VAL B 33 ILE B 36 1 N ILE B 35 O CYS B 85 SHEET 3 I 5 ARG B 2 ILE B 13 1 N ILE B 12 O LYS B 34 SHEET 4 I 5 GLU B 108 ILE B 117 1 O LYS B 113 N TYR B 8 SHEET 5 I 5 PHE B 280 ALA B 282 1 O PHE B 281 N VAL B 115 SHEET 1 J 2 TYR B 54 ILE B 55 0 SHEET 2 J 2 ILE B 64 ARG B 65 -1 O ILE B 64 N ILE B 55 SHEET 1 K 2 ALA B 123 PRO B 126 0 SHEET 2 K 2 PHE B 248 SER B 251 -1 O VAL B 249 N LYS B 125 SHEET 1 L 5 LEU B 142 HIS B 143 0 SHEET 2 L 5 ASP B 241 VAL B 244 1 O VAL B 244 N HIS B 143 SHEET 3 L 5 ARG B 156 LEU B 160 1 N ALA B 158 O ILE B 243 SHEET 4 L 5 GLU B 179 ILE B 183 1 O GLU B 179 N VAL B 157 SHEET 5 L 5 ASN B 205 LEU B 207 1 O LEU B 207 N ILE B 182 SHEET 1 M 3 PHE B 210 ILE B 216 0 SHEET 2 M 3 GLN B 223 GLU B 228 -1 O VAL B 225 N ALA B 213 SHEET 3 M 3 LYS B 234 GLU B 238 -1 O GLU B 235 N LEU B 226 SHEET 1 N 3 ILE B 262 GLU B 263 0 SHEET 2 N 3 SER B 266 VAL B 268 -1 O SER B 266 N GLU B 263 SHEET 3 N 3 CYS B 287 THR B 288 1 O THR B 288 N ILE B 267 LINK OG SER A 266 NA NA A3001 1555 1555 2.29 LINK O ASP A 285 NA NA A3001 1555 1555 2.28 LINK O HOH A 346 NA NA A3001 1555 1555 2.53 LINK O HOH A 440 NA NA A3001 1555 1555 2.54 LINK O HOH A 614 NA NA A3001 1555 1555 2.21 LINK OG SER B 266 NA NA B3002 1555 1555 2.34 LINK O ASP B 285 NA NA B3002 1555 1555 2.25 LINK O HOH B 349 NA NA B3002 1555 1555 2.45 LINK O HOH B 353 NA NA B3002 1555 1555 2.76 LINK O HOH B 550 NA NA B3002 1555 1555 2.26 CISPEP 1 THR A 208 PRO A 209 0 -11.49 CISPEP 2 THR B 208 PRO B 209 0 -8.99 SITE 1 AC1 34 ILE A 13 GLY A 14 GLY A 16 PRO A 17 SITE 2 AC1 34 VAL A 18 ILE A 36 GLU A 37 SER A 38 SITE 3 AC1 34 GLY A 44 GLN A 45 LEU A 46 TYR A 50 SITE 4 AC1 34 ASP A 57 GLN A 88 ALA A 89 VAL A 90 SITE 5 AC1 34 THR A 118 ALA A 119 GLY A 120 GLY A 122 SITE 6 AC1 34 ALA A 123 PHE A 124 GLY A 284 ASP A 285 SITE 7 AC1 34 LEU A 295 ILE A 296 HOH A 333 HOH A 343 SITE 8 AC1 34 HOH A 347 HOH A 375 HOH A 413 HIS B 324 SITE 9 AC1 34 SER B 325 THR B 326 SITE 1 AC2 29 GLY A 162 GLY A 163 ASP A 164 SER A 165 SITE 2 AC2 29 ASP A 168 HIS A 184 ARG A 185 ARG A 186 SITE 3 AC2 29 ARG A 190 HIS A 192 ASN A 245 TYR A 246 SITE 4 AC2 29 GLY A 247 PHE A 248 HOH A 359 HOH A 382 SITE 5 AC2 29 HOH A 387 HOH A 449 HOH A 451 HOH A 483 SITE 6 AC2 29 HOH A 491 HOH A 521 HOH A 526 HOH A 551 SITE 7 AC2 29 HOH A 556 HOH A 563 HOH A 592 HOH A 596 SITE 8 AC2 29 HOH A 601 SITE 1 AC3 5 SER A 266 ASP A 285 HOH A 346 HOH A 440 SITE 2 AC3 5 HOH A 614 SITE 1 AC4 34 HIS A 324 SER A 325 THR A 326 ILE B 13 SITE 2 AC4 34 GLY B 14 GLY B 16 PRO B 17 VAL B 18 SITE 3 AC4 34 ILE B 36 GLU B 37 SER B 38 GLY B 44 SITE 4 AC4 34 GLN B 45 LEU B 46 TYR B 50 ASP B 57 SITE 5 AC4 34 GLN B 88 ALA B 89 VAL B 90 THR B 118 SITE 6 AC4 34 ALA B 119 GLY B 120 GLY B 122 ALA B 123 SITE 7 AC4 34 PHE B 124 GLY B 284 ASP B 285 LEU B 295 SITE 8 AC4 34 ILE B 296 HOH B 337 HOH B 340 HOH B 342 SITE 9 AC4 34 HOH B 354 HOH B 424 SITE 1 AC5 28 ALA B 48 LEU B 49 GLU B 52 GLY B 162 SITE 2 AC5 28 GLY B 163 ASP B 164 SER B 165 ASP B 168 SITE 3 AC5 28 HIS B 184 ARG B 185 ARG B 186 ARG B 190 SITE 4 AC5 28 HIS B 192 ASN B 245 TYR B 246 GLY B 247 SITE 5 AC5 28 HOH B 336 HOH B 352 HOH B 373 HOH B 374 SITE 6 AC5 28 HOH B 395 HOH B 408 HOH B 425 HOH B 436 SITE 7 AC5 28 HOH B 437 HOH B 448 HOH B 463 HOH B 541 SITE 1 AC6 5 SER B 266 ASP B 285 HOH B 349 HOH B 353 SITE 2 AC6 5 HOH B 550 CRYST1 207.466 64.850 61.116 90.00 105.82 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004820 0.000000 0.001366 0.00000 SCALE2 0.000000 0.015420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017006 0.00000