HEADER UNKNOWN FUNCTION 02-MAR-10 3LZZ TITLE CRYSTAL STRUCTURES OF CUPIN SUPERFAMILY BBDUF985 FROM BRANCHIOSTOMA TITLE 2 BELCHERI TSINGTAUENSE IN APO AND GDP-BOUND FORMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CUPIN SUPERFAMILY HYPOTHETICAL PROTEIN BBDUF985; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRANCHIOSTOMA BELCHERI TSINGTAUENSE; SOURCE 3 ORGANISM_TAXID: 155462; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA BARREL, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.DU,Y.-X.HE,G.SAREN,X.ZHANG,S.-C.ZHANG,Y.CHEN,C.-Z.ZHOU REVDAT 2 01-NOV-23 3LZZ 1 REMARK REVDAT 1 02-JUN-10 3LZZ 0 JRNL AUTH C.Z.ZOU,Y.DU,Y.-X.HE,G.SAREN,X.ZHANG,Y.CHEN,S.-C.ZHANG JRNL TITL CRYSTAL STRUCTURES OF THE APO AND GDP-BOUND FORMS OF A JRNL TITL 2 CUPIN-LIKE PROTEIN BBDUF985 FROM BRANCHIOSTOMA BELCHERI JRNL TITL 3 TSINGTAUENSE JRNL REF PROTEINS 2010 JRNL REFN ESSN 1097-0134 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 20964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1569 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -2.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.274 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.240 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2717 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3685 ; 2.067 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 7.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;28.083 ;22.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;16.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.773 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2082 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1603 ; 1.149 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2578 ; 2.233 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1114 ; 3.561 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1107 ; 5.836 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 84.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDATE PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 44.43000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.08500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.04250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 126.12750 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.08500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 44.43000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 126.12750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 44.43000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.04250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 VAL A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 MET A 8 REMARK 465 SER A 9 REMARK 465 ASP A 171 REMARK 465 PRO A 172 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 VAL B 5 REMARK 465 ASP B 6 REMARK 465 THR B 7 REMARK 465 MET B 8 REMARK 465 SER B 9 REMARK 465 ASP B 171 REMARK 465 PRO B 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 41 CG1 CG2 REMARK 470 VAL B 41 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 33 N2 GDP B 173 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 130 CB CYS A 130 SG -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 119 -5.16 81.67 REMARK 500 ARG B 119 -10.87 82.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 174 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LOI RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GDP. DBREF 3LZZ A 1 172 UNP Q6WRH7 Q6WRH7_BRABE 1 172 DBREF 3LZZ B 1 172 UNP Q6WRH7 Q6WRH7_BRABE 1 172 SEQRES 1 A 172 MET ALA ALA THR VAL ASP THR MET SER GLU GLU VAL LYS SEQRES 2 A 172 ARG LEU ILE ALA LEU TYR GLU LEU THR PRO HIS PRO ALA SEQRES 3 A 172 SER GLY GLY TRP PHE ARG GLU THR TYR ARG SER ASP VAL SEQRES 4 A 172 GLN VAL GLU ALA GLU GLY PHE ASP GLY LYS ARG SER VAL SEQRES 5 A 172 LEU THR MET ILE TYR TYR LEU MET GLN ALA GLY GLN PRO SEQRES 6 A 172 ASP PRO PHE HIS ARG VAL LYS SER ASP GLU THR PHE VAL SEQRES 7 A 172 HIS ASN LEU GLY GLY SER MET LYS ILE HIS MET ILE HIS SEQRES 8 A 172 PRO ASP GLY SER TYR SER CYS SER ILE LEU GLY ASN PRO SEQRES 9 A 172 LEU GLU HIS PRO GLU ALA ARG HIS GLN VAL VAL VAL PRO SEQRES 10 A 172 ARG ARG VAL TRP PHE ALA GLN GLU VAL ASP GLY TYR CYS SEQRES 11 A 172 LEU ALA SER VAL LEU VAL ALA PRO GLY PHE ASP PHE LYS SEQRES 12 A 172 ASP PHE SER LEU GLY LYS ARG GLU GLU LEU ILE LYS GLU SEQRES 13 A 172 TYR PRO GLN HIS ARG ASP VAL ILE MET ARG CYS THR SER SEQRES 14 A 172 SER ASP PRO SEQRES 1 B 172 MET ALA ALA THR VAL ASP THR MET SER GLU GLU VAL LYS SEQRES 2 B 172 ARG LEU ILE ALA LEU TYR GLU LEU THR PRO HIS PRO ALA SEQRES 3 B 172 SER GLY GLY TRP PHE ARG GLU THR TYR ARG SER ASP VAL SEQRES 4 B 172 GLN VAL GLU ALA GLU GLY PHE ASP GLY LYS ARG SER VAL SEQRES 5 B 172 LEU THR MET ILE TYR TYR LEU MET GLN ALA GLY GLN PRO SEQRES 6 B 172 ASP PRO PHE HIS ARG VAL LYS SER ASP GLU THR PHE VAL SEQRES 7 B 172 HIS ASN LEU GLY GLY SER MET LYS ILE HIS MET ILE HIS SEQRES 8 B 172 PRO ASP GLY SER TYR SER CYS SER ILE LEU GLY ASN PRO SEQRES 9 B 172 LEU GLU HIS PRO GLU ALA ARG HIS GLN VAL VAL VAL PRO SEQRES 10 B 172 ARG ARG VAL TRP PHE ALA GLN GLU VAL ASP GLY TYR CYS SEQRES 11 B 172 LEU ALA SER VAL LEU VAL ALA PRO GLY PHE ASP PHE LYS SEQRES 12 B 172 ASP PHE SER LEU GLY LYS ARG GLU GLU LEU ILE LYS GLU SEQRES 13 B 172 TYR PRO GLN HIS ARG ASP VAL ILE MET ARG CYS THR SER SEQRES 14 B 172 SER ASP PRO HET GDP A 173 28 HET ACT A 174 4 HET GDP B 173 28 HET ACT B 174 4 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ACT ACETATE ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *168(H2 O) HELIX 1 1 GLU A 10 GLU A 20 1 11 HELIX 2 2 ASP A 141 PHE A 145 5 5 HELIX 3 3 LYS A 149 TYR A 157 1 9 HELIX 4 4 HIS A 160 CYS A 167 1 8 HELIX 5 5 GLU B 11 GLU B 20 1 10 HELIX 6 6 ASP B 141 PHE B 145 5 5 HELIX 7 7 LYS B 149 TYR B 157 1 9 HELIX 8 8 HIS B 160 CYS B 167 1 8 SHEET 1 A 6 THR A 22 PRO A 23 0 SHEET 2 A 6 TRP A 30 ARG A 36 -1 O PHE A 31 N THR A 22 SHEET 3 A 6 THR A 54 GLN A 61 -1 O LEU A 59 N TRP A 30 SHEET 4 A 6 TYR A 129 ALA A 137 -1 O ALA A 132 N TYR A 58 SHEET 5 A 6 ASP A 74 GLY A 82 -1 N THR A 76 O LEU A 135 SHEET 6 A 6 GLN A 113 VAL A 116 -1 O VAL A 116 N GLU A 75 SHEET 1 B 5 TYR A 96 LEU A 101 0 SHEET 2 B 5 MET A 85 ILE A 90 -1 N ILE A 87 O SER A 99 SHEET 3 B 5 TRP A 121 VAL A 126 -1 O TRP A 121 N ILE A 90 SHEET 4 B 5 ASP A 66 ARG A 70 -1 N HIS A 69 O PHE A 122 SHEET 5 B 5 SER A 146 LEU A 147 -1 O SER A 146 N ARG A 70 SHEET 1 C 6 THR B 22 PRO B 23 0 SHEET 2 C 6 GLY B 29 ARG B 36 -1 O PHE B 31 N THR B 22 SHEET 3 C 6 THR B 54 GLN B 61 -1 O LEU B 59 N TRP B 30 SHEET 4 C 6 TYR B 129 ALA B 137 -1 O ALA B 132 N TYR B 58 SHEET 5 C 6 ASP B 74 GLY B 82 -1 N THR B 76 O LEU B 135 SHEET 6 C 6 GLN B 113 VAL B 116 -1 O VAL B 116 N GLU B 75 SHEET 1 D 2 GLN B 40 VAL B 41 0 SHEET 2 D 2 ARG B 50 SER B 51 -1 O ARG B 50 N VAL B 41 SHEET 1 E 5 TYR B 96 LEU B 101 0 SHEET 2 E 5 MET B 85 ILE B 90 -1 N MET B 85 O LEU B 101 SHEET 3 E 5 TRP B 121 VAL B 126 -1 O TRP B 121 N ILE B 90 SHEET 4 E 5 ASP B 66 ARG B 70 -1 N HIS B 69 O PHE B 122 SHEET 5 E 5 SER B 146 LEU B 147 -1 O SER B 146 N ARG B 70 CISPEP 1 SER A 27 GLY A 28 0 -4.51 CISPEP 2 GLY A 28 GLY A 29 0 1.17 CISPEP 3 ALA A 137 PRO A 138 0 0.21 CISPEP 4 GLU B 10 GLU B 11 0 -18.49 CISPEP 5 ALA B 137 PRO B 138 0 -3.02 SITE 1 AC1 10 HIS A 24 PRO A 25 PHE A 31 GLU A 33 SITE 2 AC1 10 THR A 54 ILE A 56 PHE A 140 ACT A 174 SITE 3 AC1 10 HOH A 199 HOH A 251 SITE 1 AC2 11 HIS B 24 PRO B 25 PHE B 31 GLU B 33 SITE 2 AC2 11 ILE B 56 PHE B 140 PHE B 142 ACT B 174 SITE 3 AC2 11 HOH B 180 HOH B 211 HOH B 227 SITE 1 AC3 6 HIS B 24 ASP B 66 HIS B 69 GLU B 75 SITE 2 AC3 6 PHE B 122 GDP B 173 SITE 1 AC4 6 HIS A 24 ASP A 66 HIS A 69 GLU A 75 SITE 2 AC4 6 GLN A 124 GDP A 173 CRYST1 88.860 88.860 168.170 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011254 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005946 0.00000