HEADER PROTEIN BINDING 02-MAR-10 3M06 TITLE CRYSTAL STRUCTURE OF TRAF2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 2; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 266-329; COMPND 5 SYNONYM: TUMOR NECROSIS FACTOR TYPE 2 RECEPTOR-ASSOCIATED PROTEIN 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS TNF RECEPTOR ASSOCIATED FACTOR, ACETYLATION, ALTERNATIVE SPLICING, KEYWDS 2 APOPTOSIS, COILED COIL, CYTOPLASM, METAL-BINDING, UBL CONJUGATION, KEYWDS 3 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR V.KABALEESWARAN,H.WU REVDAT 3 06-SEP-23 3M06 1 SEQADV REVDAT 2 08-NOV-17 3M06 1 REMARK REVDAT 1 28-APR-10 3M06 0 JRNL AUTH C.ZHENG,V.KABALEESWARAN,Y.WANG,G.CHENG,H.WU JRNL TITL CRYSTAL STRUCTURES OF THE TRAF2: CIAP2 AND THE TRAF1: TRAF2: JRNL TITL 2 CIAP2 COMPLEXES: AFFINITY, SPECIFICITY, AND REGULATION. JRNL REF MOL.CELL V. 38 101 2010 JRNL REFN ISSN 1097-2765 JRNL PMID 20385093 JRNL DOI 10.1016/J.MOLCEL.2010.03.009 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1053 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2625 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.73000 REMARK 3 B22 (A**2) : -12.73000 REMARK 3 B33 (A**2) : 25.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.067 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2637 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3579 ; 1.236 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.349 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;42.118 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 431 ;22.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.384 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1912 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1860 ; 0.660 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2917 ; 1.428 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 777 ; 2.517 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 662 ; 4.403 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.525 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3M06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3M0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG3350, 6% TACSIMATE, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.35300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.50507 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.90933 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 75.35300 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 43.50507 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.90933 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 75.35300 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 43.50507 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.90933 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.01015 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 57.81867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 87.01015 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 57.81867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 87.01015 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.81867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 266 REMARK 465 GLY A 329 REMARK 465 LEU A 330 REMARK 465 GLU A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 SER B 266 REMARK 465 GLY B 329 REMARK 465 LEU B 330 REMARK 465 GLU B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 SER C 266 REMARK 465 GLY C 329 REMARK 465 LEU C 330 REMARK 465 GLU C 331 REMARK 465 HIS C 332 REMARK 465 HIS C 333 REMARK 465 HIS C 334 REMARK 465 HIS C 335 REMARK 465 HIS C 336 REMARK 465 HIS C 337 REMARK 465 SER D 266 REMARK 465 GLY D 329 REMARK 465 LEU D 330 REMARK 465 GLU D 331 REMARK 465 HIS D 332 REMARK 465 HIS D 333 REMARK 465 HIS D 334 REMARK 465 HIS D 335 REMARK 465 HIS D 336 REMARK 465 HIS D 337 REMARK 465 SER E 266 REMARK 465 GLY E 329 REMARK 465 LEU E 330 REMARK 465 GLU E 331 REMARK 465 HIS E 332 REMARK 465 HIS E 333 REMARK 465 HIS E 334 REMARK 465 HIS E 335 REMARK 465 HIS E 336 REMARK 465 HIS E 337 REMARK 465 SER F 266 REMARK 465 GLY F 329 REMARK 465 LEU F 330 REMARK 465 GLU F 331 REMARK 465 HIS F 332 REMARK 465 HIS F 333 REMARK 465 HIS F 334 REMARK 465 HIS F 335 REMARK 465 HIS F 336 REMARK 465 HIS F 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 277 CG CD CE NZ REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 MET A 298 CG SD CE REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 309 CG CD1 CD2 REMARK 470 GLN A 311 CG CD OE1 NE2 REMARK 470 ASP A 312 CG OD1 OD2 REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 LEU B 269 CG CD1 CD2 REMARK 470 GLN B 270 CG CD OE1 NE2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 GLU B 283 CG CD OE1 OE2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 311 CG CD OE1 NE2 REMARK 470 LYS B 313 CG CD CE NZ REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 GLN B 322 CG CD OE1 NE2 REMARK 470 GLN B 323 CG CD OE1 NE2 REMARK 470 GLU C 267 CG CD OE1 OE2 REMARK 470 LEU C 269 CG CD1 CD2 REMARK 470 ARG C 271 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 273 CG CD OE1 OE2 REMARK 470 LYS C 277 CG CD CE NZ REMARK 470 LYS C 278 CG CD CE NZ REMARK 470 GLU C 294 CG CD OE1 OE2 REMARK 470 MET C 298 CG SD CE REMARK 470 GLU C 301 CG CD OE1 OE2 REMARK 470 ARG C 305 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 306 CG CD OE1 NE2 REMARK 470 ARG C 308 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 309 CG CD1 CD2 REMARK 470 GLN C 311 CG CD OE1 NE2 REMARK 470 ILE C 314 CG1 CG2 CD1 REMARK 470 GLU C 315 CG CD OE1 OE2 REMARK 470 GLN C 322 CG CD OE1 NE2 REMARK 470 GLN C 323 CG CD OE1 NE2 REMARK 470 GLU C 325 CG CD OE1 OE2 REMARK 470 ARG C 326 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 283 CG CD OE1 OE2 REMARK 470 ARG D 291 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 301 CG CD OE1 OE2 REMARK 470 ARG D 305 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 308 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 311 CG CD OE1 NE2 REMARK 470 ASP D 312 CG OD1 OD2 REMARK 470 LYS D 313 CG CD CE NZ REMARK 470 GLU D 315 CG CD OE1 OE2 REMARK 470 GLU D 325 CG CD OE1 OE2 REMARK 470 LEU E 269 CG CD1 CD2 REMARK 470 GLN E 270 CG CD OE1 NE2 REMARK 470 GLU E 273 CG CD OE1 OE2 REMARK 470 LYS E 278 CG CD CE NZ REMARK 470 ARG E 295 CG CD NE CZ NH1 NH2 REMARK 470 THR E 299 OG1 CG2 REMARK 470 ARG E 308 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 311 CG CD OE1 NE2 REMARK 470 LYS E 313 CG CD CE NZ REMARK 470 GLU E 315 CG CD OE1 OE2 REMARK 470 GLN E 322 CG CD OE1 NE2 REMARK 470 GLN E 323 CG CD OE1 NE2 REMARK 470 ARG E 326 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 269 CG CD1 CD2 REMARK 470 GLN F 270 CG CD OE1 NE2 REMARK 470 ARG F 271 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 273 CG CD OE1 OE2 REMARK 470 LYS F 277 CG CD CE NZ REMARK 470 MET F 298 CG SD CE REMARK 470 GLU F 301 CG CD OE1 OE2 REMARK 470 ARG F 305 CG CD NE CZ NH1 NH2 REMARK 470 GLN F 306 CG CD OE1 NE2 REMARK 470 ARG F 308 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 309 CG CD1 CD2 REMARK 470 ASP F 310 CG OD1 OD2 REMARK 470 GLN F 311 CG CD OE1 NE2 REMARK 470 ILE F 314 CG1 CG2 CD1 REMARK 470 GLU F 315 CG CD OE1 OE2 REMARK 470 GLN F 322 CG CD OE1 NE2 REMARK 470 GLN F 323 CG CD OE1 NE2 REMARK 470 GLU F 325 CG CD OE1 OE2 REMARK 470 ARG F 326 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 272 CB CYS C 272 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 277 -73.10 -53.99 REMARK 500 SER B 327 30.94 -91.25 REMARK 500 ARG D 271 -37.28 -38.87 REMARK 500 GLU D 276 -39.97 -38.46 REMARK 500 CYS D 303 -9.22 -57.07 REMARK 500 LEU E 269 -18.33 -42.72 REMARK 500 MET E 298 -36.01 -132.64 REMARK 500 GLU F 276 -32.09 -36.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M0A RELATED DB: PDB REMARK 900 RELATED ID: 3M0D RELATED DB: PDB DBREF 3M06 A 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M06 B 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M06 C 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M06 D 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M06 E 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M06 F 266 329 UNP Q12933 TRAF2_HUMAN 266 329 SEQADV 3M06 LEU A 330 UNP Q12933 EXPRESSION TAG SEQADV 3M06 GLU A 331 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS A 332 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS A 333 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS A 334 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS A 335 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS A 336 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS A 337 UNP Q12933 EXPRESSION TAG SEQADV 3M06 LEU B 330 UNP Q12933 EXPRESSION TAG SEQADV 3M06 GLU B 331 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS B 332 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS B 333 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS B 334 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS B 335 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS B 336 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS B 337 UNP Q12933 EXPRESSION TAG SEQADV 3M06 LEU C 330 UNP Q12933 EXPRESSION TAG SEQADV 3M06 GLU C 331 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS C 332 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS C 333 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS C 334 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS C 335 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS C 336 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS C 337 UNP Q12933 EXPRESSION TAG SEQADV 3M06 LEU D 330 UNP Q12933 EXPRESSION TAG SEQADV 3M06 GLU D 331 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS D 332 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS D 333 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS D 334 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS D 335 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS D 336 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS D 337 UNP Q12933 EXPRESSION TAG SEQADV 3M06 LEU E 330 UNP Q12933 EXPRESSION TAG SEQADV 3M06 GLU E 331 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS E 332 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS E 333 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS E 334 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS E 335 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS E 336 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS E 337 UNP Q12933 EXPRESSION TAG SEQADV 3M06 LEU F 330 UNP Q12933 EXPRESSION TAG SEQADV 3M06 GLU F 331 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS F 332 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS F 333 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS F 334 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS F 335 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS F 336 UNP Q12933 EXPRESSION TAG SEQADV 3M06 HIS F 337 UNP Q12933 EXPRESSION TAG SEQRES 1 A 72 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 A 72 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 A 72 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 A 72 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 A 72 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 A 72 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 72 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 B 72 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 B 72 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 B 72 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 B 72 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 B 72 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 72 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 C 72 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 C 72 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 C 72 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 C 72 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 C 72 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 72 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 D 72 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 D 72 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 D 72 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 D 72 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 D 72 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 72 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 E 72 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 E 72 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 E 72 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 E 72 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 E 72 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 72 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 F 72 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 F 72 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 F 72 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 F 72 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 F 72 GLU HIS HIS HIS HIS HIS HIS FORMUL 7 HOH *61(H2 O) HELIX 1 1 GLU A 267 SER A 327 1 61 HELIX 2 2 GLU B 267 HIS B 307 1 41 HELIX 3 3 ASP B 312 LEU B 317 1 6 HELIX 4 4 LEU B 317 GLU B 325 1 9 HELIX 5 5 GLU C 267 ILE C 328 1 62 HELIX 6 6 GLU D 267 GLU D 325 1 59 HELIX 7 7 GLU E 267 VAL E 296 1 30 HELIX 8 8 MET E 298 ARG E 326 1 29 HELIX 9 9 GLU F 267 SER F 327 1 61 CRYST1 150.706 150.706 86.728 90.00 90.00 120.00 H 3 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006635 0.003831 0.000000 0.00000 SCALE2 0.000000 0.007662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011530 0.00000