HEADER SIGNALING PROTEIN 02-MAR-10 3M0D TITLE CRYSTAL STRUCTURE OF THE TRAF1:TRAF2:CIAP2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 266-329; COMPND 5 SYNONYM: TUMOR NECROSIS FACTOR TYPE 2 RECEPTOR-ASSOCIATED PROTEIN 3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 1; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: RESIDUES 266-329; COMPND 11 SYNONYM: EPSTEIN-BARR VIRUS-INDUCED PROTEIN 6; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 3; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: RESIDUES 26-99; COMPND 17 SYNONYM: INHIBITOR OF APOPTOSIS PROTEIN 1, IAP-1, HIAP-1, HIAP1, C- COMPND 18 IAP2, TNFR2-TRAF-SIGNALING COMPLEX PROTEIN 1, IAP HOMOLOG C, COMPND 19 APOPTOSIS INHIBITOR 2, API2, RING FINGER PROTEIN 49; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TRAF1, EBI6; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 GENE: BIRC3, API2, IAP1, MIHC, RNF49; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIMERIC HELIX COILED COILED, ACETYLATION, ALTERNATIVE SPLICING, KEYWDS 2 APOPTOSIS, COILED COIL, CYTOPLASM, METAL-BINDING, UBL CONJUGATION, KEYWDS 3 POLYMORPHISM, CHROMOSOMAL REARRANGEMENT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.KABALEESWARAN,H.WU REVDAT 2 06-SEP-23 3M0D 1 REMARK SEQADV LINK REVDAT 1 28-APR-10 3M0D 0 JRNL AUTH C.ZHENG,V.KABALEESWARAN,Y.WANG,G.CHENG,H.WU JRNL TITL CRYSTAL STRUCTURES OF THE TRAF2: CIAP2 AND THE TRAF1: TRAF2: JRNL TITL 2 CIAP2 COMPLEXES: AFFINITY, SPECIFICITY, AND REGULATION. JRNL REF MOL.CELL V. 38 101 2010 JRNL REFN ISSN 1097-2765 JRNL PMID 20385093 JRNL DOI 10.1016/J.MOLCEL.2010.03.009 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 8753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 436 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 603 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83000 REMARK 3 B22 (A**2) : -1.83000 REMARK 3 B33 (A**2) : 3.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.432 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2066 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2780 ; 1.622 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 6.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;39.749 ;24.396 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;22.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.446 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1500 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1313 ; 0.640 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2100 ; 1.288 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 753 ; 2.517 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 680 ; 4.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6863 -1.5179 32.6451 REMARK 3 T TENSOR REMARK 3 T11: 0.3096 T22: 0.1373 REMARK 3 T33: 0.2275 T12: -0.0301 REMARK 3 T13: 0.0687 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4862 L22: 12.4772 REMARK 3 L33: 0.5842 L12: 0.3088 REMARK 3 L13: 0.1365 L23: 0.8425 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.1236 S13: 0.1501 REMARK 3 S21: 0.3614 S22: 0.2125 S23: -0.4341 REMARK 3 S31: 0.0936 S32: -0.0503 S33: -0.1798 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 267 B 329 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9562 -1.6951 28.1585 REMARK 3 T TENSOR REMARK 3 T11: 0.3439 T22: 0.1275 REMARK 3 T33: 0.1992 T12: 0.0217 REMARK 3 T13: 0.0004 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.2947 L22: 24.3267 REMARK 3 L33: 0.5824 L12: 1.5690 REMARK 3 L13: -0.0689 L23: 0.1905 REMARK 3 S TENSOR REMARK 3 S11: -0.2685 S12: 0.0384 S13: 0.0559 REMARK 3 S21: -0.1766 S22: 0.5378 S23: 0.0909 REMARK 3 S31: 0.0525 S32: 0.1436 S33: -0.2693 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 266 C 328 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6142 -1.1415 27.7754 REMARK 3 T TENSOR REMARK 3 T11: 0.2254 T22: 0.1380 REMARK 3 T33: 0.1085 T12: -0.0002 REMARK 3 T13: 0.0162 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.8559 L22: 23.0927 REMARK 3 L33: 1.3797 L12: 1.4841 REMARK 3 L13: -0.6590 L23: -4.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: 0.0828 S13: 0.1289 REMARK 3 S21: 0.6819 S22: 0.2575 S23: 1.0128 REMARK 3 S31: 0.0002 S32: -0.0886 S33: -0.2688 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 25 D 99 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3880 9.1101 9.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.4574 T22: 0.1696 REMARK 3 T33: 0.3242 T12: 0.0925 REMARK 3 T13: -0.1135 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 3.6777 L22: 4.4130 REMARK 3 L33: 8.2418 L12: 0.6461 REMARK 3 L13: -3.2901 L23: 2.1145 REMARK 3 S TENSOR REMARK 3 S11: -0.1784 S12: 0.3740 S13: -0.5075 REMARK 3 S21: -0.4628 S22: 0.0082 S23: 0.1091 REMARK 3 S31: 1.0779 S32: 0.0128 S33: 0.1702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3M0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9137 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3M0A (TRAF2:CIAP2) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M AMSO4, 0.1M MES, 15% PEG 4000, REMARK 280 PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.93350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 45.93350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.35100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.93350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.17550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.93350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.52650 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.93350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.93350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.35100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 45.93350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.52650 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 45.93350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 22.17550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 -1.000000 0.000000 0.000000 45.93350 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 22.17550 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 266 REMARK 465 LEU A 330 REMARK 465 GLU A 331 REMARK 465 SER B 266 REMARK 465 LEU B 330 REMARK 465 GLU B 331 REMARK 465 MET C 265 REMARK 465 ALA C 329 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 312 CG OD1 OD2 REMARK 470 GLN B 270 CG CD OE1 NE2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 ARG C 280 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 311 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 313 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 77 CG CD CE NZ REMARK 470 ARG D 78 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 84 CG CD OE1 OE2 REMARK 470 LYS D 87 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 328 -88.19 -117.37 REMARK 500 THR C 327 47.70 -105.21 REMARK 500 ASN D 61 -123.94 48.65 REMARK 500 CYS D 68 -68.05 -91.68 REMARK 500 ASN D 75 82.32 37.56 REMARK 500 TYR D 90 64.56 -170.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 66 SG REMARK 620 2 CYS D 69 SG 118.9 REMARK 620 3 HIS D 86 NE2 106.6 106.0 REMARK 620 4 CYS D 93 SG 101.1 112.4 111.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M06 RELATED DB: PDB REMARK 900 RELATED ID: 3M0A RELATED DB: PDB DBREF 3M0D A 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M0D B 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M0D C 266 329 UNP Q13077 TRAF1_HUMAN 181 244 DBREF 3M0D D 26 99 UNP Q13489 BIRC3_HUMAN 26 99 SEQADV 3M0D LEU A 330 UNP Q12933 EXPRESSION TAG SEQADV 3M0D GLU A 331 UNP Q12933 EXPRESSION TAG SEQADV 3M0D LEU B 330 UNP Q12933 EXPRESSION TAG SEQADV 3M0D GLU B 331 UNP Q12933 EXPRESSION TAG SEQADV 3M0D MET C 265 UNP Q13077 INITIATING METHIONINE SEQADV 3M0D MET D 25 UNP Q13489 INITIATING METHIONINE SEQRES 1 A 66 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 A 66 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 A 66 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 A 66 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 A 66 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 A 66 GLU SEQRES 1 B 66 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 B 66 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 B 66 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 B 66 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 B 66 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 B 66 GLU SEQRES 1 C 65 MET PHE MET LYS GLU LYS LEU LEU ALA GLU LEU GLU GLY SEQRES 2 C 65 LYS LEU ARG VAL PHE GLU ASN ILE VAL ALA VAL LEU ASN SEQRES 3 C 65 LYS GLU VAL GLU ALA SER HIS LEU ALA LEU ALA THR SER SEQRES 4 C 65 ILE HIS GLN SER GLN LEU ASP ARG GLU ARG ILE LEU SER SEQRES 5 C 65 LEU GLU GLN ARG VAL VAL GLU LEU GLN GLN THR LEU ALA SEQRES 1 D 75 MET LEU SER CYS GLU LEU TYR ARG MET SER THR TYR SER SEQRES 2 D 75 THR PHE PRO ALA GLY VAL PRO VAL SER GLU ARG SER LEU SEQRES 3 D 75 ALA ARG ALA GLY PHE TYR TYR THR GLY VAL ASN ASP LYS SEQRES 4 D 75 VAL LYS CYS PHE CYS CYS GLY LEU MET LEU ASP ASN TRP SEQRES 5 D 75 LYS ARG GLY ASP SER PRO THR GLU LYS HIS LYS LYS LEU SEQRES 6 D 75 TYR PRO SER CYS ARG PHE VAL GLN SER LEU HET ZN D 401 1 HETNAM ZN ZINC ION FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *42(H2 O) HELIX 1 1 GLU A 267 GLY A 329 1 63 HELIX 2 2 GLU B 267 ILE B 328 1 62 HELIX 3 3 MET C 267 THR C 327 1 61 HELIX 4 4 SER D 27 SER D 34 1 8 HELIX 5 5 THR D 35 SER D 37 5 3 HELIX 6 6 SER D 46 ALA D 53 1 8 HELIX 7 7 SER D 81 TYR D 90 1 10 HELIX 8 8 CYS D 93 LEU D 99 1 7 SHEET 1 A 3 PHE D 55 TYR D 57 0 SHEET 2 A 3 VAL D 64 CYS D 66 -1 O LYS D 65 N TYR D 56 SHEET 3 A 3 MET D 72 LEU D 73 -1 O LEU D 73 N VAL D 64 LINK SG CYS D 66 ZN ZN D 401 1555 1555 2.32 LINK SG CYS D 69 ZN ZN D 401 1555 1555 2.39 LINK NE2 HIS D 86 ZN ZN D 401 1555 1555 2.10 LINK SG CYS D 93 ZN ZN D 401 1555 1555 2.36 SITE 1 AC1 4 CYS D 66 CYS D 69 HIS D 86 CYS D 93 CRYST1 91.867 91.867 88.702 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011274 0.00000