HEADER TRANSFERASE 03-MAR-10 3M0G TITLE CRYSTAL STRUCTURE OF PUTATIVE FARNESYL DIPHOSPHATE SYNTHASE FROM TITLE 2 RHODOBACTER CAPSULATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_COMMON: RHODOPSEUDOMONAS CAPSULATA; SOURCE 4 ORGANISM_TAXID: 1061; SOURCE 5 GENE: 8272412; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGXRC, ISOPRENE KEYWDS 2 BIOSYNTHESIS, TRANSFERASE, PSI-2, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 10-FEB-21 3M0G 1 AUTHOR JRNL LINK REVDAT 4 21-NOV-18 3M0G 1 AUTHOR REVDAT 3 08-NOV-17 3M0G 1 REMARK REVDAT 2 13-JUL-11 3M0G 1 VERSN REVDAT 1 31-MAR-10 3M0G 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE FARNESYL DIPHOSPHATE SYNTHASE JRNL TITL 2 FROM RHODOBACTER CAPSULATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 47501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3827 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.737 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.887 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3873 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5262 ; 1.232 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 4.631 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;33.772 ;24.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;16.330 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2893 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2632 ; 0.782 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4119 ; 2.931 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1241 ; 7.455 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1143 ; 0.869 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1862 40.7926 72.1328 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.1120 REMARK 3 T33: 0.0722 T12: 0.0132 REMARK 3 T13: -0.0100 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.6057 L22: 0.2499 REMARK 3 L33: 1.0642 L12: -0.0612 REMARK 3 L13: -0.6737 L23: 0.2330 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: 0.1586 S13: -0.0797 REMARK 3 S21: 0.0185 S22: 0.0056 S23: -0.0224 REMARK 3 S31: 0.0823 S32: -0.0541 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 287 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1632 57.9989 94.8326 REMARK 3 T TENSOR REMARK 3 T11: 0.1065 T22: 0.0070 REMARK 3 T33: 0.0929 T12: 0.0192 REMARK 3 T13: 0.0207 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.7649 L22: 0.0844 REMARK 3 L33: 0.9947 L12: -0.0453 REMARK 3 L13: -0.2017 L23: 0.2679 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: 0.0383 S13: 0.0579 REMARK 3 S21: 0.0055 S22: -0.0095 S23: 0.0037 REMARK 3 S31: -0.0619 S32: -0.0602 S33: -0.0871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3M0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASP A 220 REMARK 465 VAL A 221 REMARK 465 GLU A 222 REMARK 465 GLY A 223 REMARK 465 ASN A 224 REMARK 465 GLU A 225 REMARK 465 GLU A 226 REMARK 465 ALA A 227 REMARK 465 ALA A 228 REMARK 465 GLY A 229 REMARK 465 LYS A 230 REMARK 465 ARG A 231 REMARK 465 LEU A 232 REMARK 465 GLY A 233 REMARK 465 LYS A 234 REMARK 465 ASP A 235 REMARK 465 ALA A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 HIS A 239 REMARK 465 LYS A 240 REMARK 465 ARG A 287 REMARK 465 ASP A 288 REMARK 465 LYS A 289 REMARK 465 GLU A 290 REMARK 465 GLY A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 MSE B 1 REMARK 465 GLU B 222 REMARK 465 GLY B 223 REMARK 465 ASN B 224 REMARK 465 GLU B 225 REMARK 465 GLU B 226 REMARK 465 ALA B 227 REMARK 465 ALA B 228 REMARK 465 GLY B 229 REMARK 465 LYS B 230 REMARK 465 ARG B 231 REMARK 465 LEU B 232 REMARK 465 GLY B 233 REMARK 465 LYS B 234 REMARK 465 ASP B 235 REMARK 465 ALA B 236 REMARK 465 GLU B 237 REMARK 465 ALA B 238 REMARK 465 HIS B 239 REMARK 465 ASP B 288 REMARK 465 LYS B 289 REMARK 465 GLU B 290 REMARK 465 GLY B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 270 O HOH B 305 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 86 -114.83 -115.89 REMARK 500 TRP A 102 -107.97 -102.13 REMARK 500 ILE A 218 84.50 -61.89 REMARK 500 MSE B 86 -112.94 -106.61 REMARK 500 TRP B 102 -99.19 -109.80 REMARK 500 THR B 161 -68.55 -90.05 REMARK 500 ALA B 162 133.08 -23.69 REMARK 500 ASP B 220 2.26 -62.29 REMARK 500 GLU B 286 51.64 -92.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-20032C RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS SATE THAT THIS PDB ENTRY HAS VERIFIED SEQUENCE FOR THE REMARK 999 NYSGXRC-20032C TARGET WHICH HAS 12 MISMATCHES RELATIVE TO THE REMARK 999 PREVIOUSLY REPORTED SEQUENCE. THE SEQUENCE IS DIFFERENT FROM UNP REMARK 999 ENTRY Q9KWR7 DBREF 3M0G A 4 289 UNP Q9KWR7 Q9KWR7_RHOCA 3 288 DBREF 3M0G B 4 289 UNP Q9KWR7 Q9KWR7_RHOCA 3 288 SEQADV 3M0G MSE A 1 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G SER A 2 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G LEU A 3 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G ALA A 13 UNP Q9KWR7 GLY 12 SEE REMARK 999 SEQADV 3M0G THR A 16 UNP Q9KWR7 ALA 15 SEE REMARK 999 SEQADV 3M0G ALA A 61 UNP Q9KWR7 GLU 60 SEE REMARK 999 SEQADV 3M0G LYS A 100 UNP Q9KWR7 ARG 99 SEE REMARK 999 SEQADV 3M0G ASP A 104 UNP Q9KWR7 GLU 103 SEE REMARK 999 SEQADV 3M0G LEU A 193 UNP Q9KWR7 ILE 192 SEE REMARK 999 SEQADV 3M0G GLY A 199 UNP Q9KWR7 ALA 198 SEE REMARK 999 SEQADV 3M0G PRO A 200 UNP Q9KWR7 LEU 199 SEE REMARK 999 SEQADV 3M0G THR A 202 UNP Q9KWR7 ALA 201 SEE REMARK 999 SEQADV 3M0G ASN A 224 UNP Q9KWR7 ASP 223 SEE REMARK 999 SEQADV 3M0G ALA A 250 UNP Q9KWR7 PRO 249 SEE REMARK 999 SEQADV 3M0G SER A 254 UNP Q9KWR7 ALA 253 SEE REMARK 999 SEQADV 3M0G SER A 275 UNP Q9KWR7 ALA 274 SEE REMARK 999 SEQADV 3M0G GLU A 290 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G GLY A 291 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS A 292 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS A 293 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS A 294 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS A 295 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS A 296 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS A 297 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G MSE B 1 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G SER B 2 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G LEU B 3 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G ALA B 13 UNP Q9KWR7 GLY 12 SEE REMARK 999 SEQADV 3M0G THR B 16 UNP Q9KWR7 ALA 15 SEE REMARK 999 SEQADV 3M0G ALA B 61 UNP Q9KWR7 GLU 60 SEE REMARK 999 SEQADV 3M0G LYS B 100 UNP Q9KWR7 ARG 99 SEE REMARK 999 SEQADV 3M0G ASP B 104 UNP Q9KWR7 GLU 103 SEE REMARK 999 SEQADV 3M0G LEU B 193 UNP Q9KWR7 ILE 192 SEE REMARK 999 SEQADV 3M0G GLY B 199 UNP Q9KWR7 ALA 198 SEE REMARK 999 SEQADV 3M0G PRO B 200 UNP Q9KWR7 LEU 199 SEE REMARK 999 SEQADV 3M0G THR B 202 UNP Q9KWR7 ALA 201 SEE REMARK 999 SEQADV 3M0G ASN B 224 UNP Q9KWR7 ASP 223 SEE REMARK 999 SEQADV 3M0G ALA B 250 UNP Q9KWR7 PRO 249 SEE REMARK 999 SEQADV 3M0G SER B 254 UNP Q9KWR7 ALA 253 SEE REMARK 999 SEQADV 3M0G SER B 275 UNP Q9KWR7 ALA 274 SEE REMARK 999 SEQADV 3M0G GLU B 290 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G GLY B 291 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS B 292 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS B 293 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS B 294 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS B 295 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS B 296 UNP Q9KWR7 EXPRESSION TAG SEQADV 3M0G HIS B 297 UNP Q9KWR7 EXPRESSION TAG SEQRES 1 A 297 MSE SER LEU SER GLU ARG LEU LYS GLU VAL GLN ASP ALA SEQRES 2 A 297 VAL GLU THR ALA MSE ALA ALA ALA ILE GLY ARG LEU PRO SEQRES 3 A 297 ALA GLY ASP LEU ARG ASP ALA MSE ALA TYR ALA ALA GLN SEQRES 4 A 297 GLY GLY LYS ARG LEU ARG ALA PHE LEU ALA ILE GLU SER SEQRES 5 A 297 ALA ALA ILE HIS GLY ILE SER MSE ALA GLN ALA MSE PRO SEQRES 6 A 297 ALA ALA LEU ALA VAL GLU ALA LEU HIS ALA TYR SER LEU SEQRES 7 A 297 VAL HIS ASP ASP MSE PRO CYS MSE ASP ASN ASP ASP LEU SEQRES 8 A 297 ARG ARG GLY LEU PRO THR VAL HIS LYS LYS TRP ASP ASP SEQRES 9 A 297 ALA THR ALA VAL LEU ALA GLY ASP ALA LEU GLN THR LEU SEQRES 10 A 297 ALA PHE GLU LEU CYS THR ASP PRO VAL LEU GLY SER ALA SEQRES 11 A 297 GLU ASN ARG VAL ALA LEU VAL ALA ALA LEU ALA GLN ALA SEQRES 12 A 297 SER GLY ALA GLU GLY MSE VAL TYR GLY GLN ALA LEU ASP SEQRES 13 A 297 ILE ALA ALA GLU THR ALA ALA VAL PRO LEU THR LEU ASP SEQRES 14 A 297 GLU ILE ILE ARG LEU GLN ALA GLY LYS THR GLY ALA LEU SEQRES 15 A 297 ILE SER PHE ALA ALA GLN ALA GLY ALA ILE LEU ALA GLY SEQRES 16 A 297 ALA ASP ARG GLY PRO LEU THR ALA TYR ALA THR ALA LEU SEQRES 17 A 297 GLY LEU ALA PHE GLN ILE ALA ASP ASP ILE LEU ASP VAL SEQRES 18 A 297 GLU GLY ASN GLU GLU ALA ALA GLY LYS ARG LEU GLY LYS SEQRES 19 A 297 ASP ALA GLU ALA HIS LYS ALA THR PHE VAL SER LEU LEU SEQRES 20 A 297 GLY LEU ALA GLY ALA LYS SER ARG ALA ALA ASP LEU VAL SEQRES 21 A 297 ALA GLU ALA GLU ALA ALA LEU ALA PRO TYR GLY GLU ALA SEQRES 22 A 297 ALA SER THR LEU ARG ALA CYS ALA ARG TYR VAL ILE GLU SEQRES 23 A 297 ARG ASP LYS GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 297 MSE SER LEU SER GLU ARG LEU LYS GLU VAL GLN ASP ALA SEQRES 2 B 297 VAL GLU THR ALA MSE ALA ALA ALA ILE GLY ARG LEU PRO SEQRES 3 B 297 ALA GLY ASP LEU ARG ASP ALA MSE ALA TYR ALA ALA GLN SEQRES 4 B 297 GLY GLY LYS ARG LEU ARG ALA PHE LEU ALA ILE GLU SER SEQRES 5 B 297 ALA ALA ILE HIS GLY ILE SER MSE ALA GLN ALA MSE PRO SEQRES 6 B 297 ALA ALA LEU ALA VAL GLU ALA LEU HIS ALA TYR SER LEU SEQRES 7 B 297 VAL HIS ASP ASP MSE PRO CYS MSE ASP ASN ASP ASP LEU SEQRES 8 B 297 ARG ARG GLY LEU PRO THR VAL HIS LYS LYS TRP ASP ASP SEQRES 9 B 297 ALA THR ALA VAL LEU ALA GLY ASP ALA LEU GLN THR LEU SEQRES 10 B 297 ALA PHE GLU LEU CYS THR ASP PRO VAL LEU GLY SER ALA SEQRES 11 B 297 GLU ASN ARG VAL ALA LEU VAL ALA ALA LEU ALA GLN ALA SEQRES 12 B 297 SER GLY ALA GLU GLY MSE VAL TYR GLY GLN ALA LEU ASP SEQRES 13 B 297 ILE ALA ALA GLU THR ALA ALA VAL PRO LEU THR LEU ASP SEQRES 14 B 297 GLU ILE ILE ARG LEU GLN ALA GLY LYS THR GLY ALA LEU SEQRES 15 B 297 ILE SER PHE ALA ALA GLN ALA GLY ALA ILE LEU ALA GLY SEQRES 16 B 297 ALA ASP ARG GLY PRO LEU THR ALA TYR ALA THR ALA LEU SEQRES 17 B 297 GLY LEU ALA PHE GLN ILE ALA ASP ASP ILE LEU ASP VAL SEQRES 18 B 297 GLU GLY ASN GLU GLU ALA ALA GLY LYS ARG LEU GLY LYS SEQRES 19 B 297 ASP ALA GLU ALA HIS LYS ALA THR PHE VAL SER LEU LEU SEQRES 20 B 297 GLY LEU ALA GLY ALA LYS SER ARG ALA ALA ASP LEU VAL SEQRES 21 B 297 ALA GLU ALA GLU ALA ALA LEU ALA PRO TYR GLY GLU ALA SEQRES 22 B 297 ALA SER THR LEU ARG ALA CYS ALA ARG TYR VAL ILE GLU SEQRES 23 B 297 ARG ASP LYS GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3M0G MSE A 18 MET SELENOMETHIONINE MODRES 3M0G MSE A 34 MET SELENOMETHIONINE MODRES 3M0G MSE A 60 MET SELENOMETHIONINE MODRES 3M0G MSE A 64 MET SELENOMETHIONINE MODRES 3M0G MSE A 83 MET SELENOMETHIONINE MODRES 3M0G MSE A 86 MET SELENOMETHIONINE MODRES 3M0G MSE A 149 MET SELENOMETHIONINE MODRES 3M0G MSE B 18 MET SELENOMETHIONINE MODRES 3M0G MSE B 34 MET SELENOMETHIONINE MODRES 3M0G MSE B 60 MET SELENOMETHIONINE MODRES 3M0G MSE B 64 MET SELENOMETHIONINE MODRES 3M0G MSE B 83 MET SELENOMETHIONINE MODRES 3M0G MSE B 86 MET SELENOMETHIONINE MODRES 3M0G MSE B 149 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 34 8 HET MSE A 60 8 HET MSE A 64 8 HET MSE A 83 8 HET MSE A 86 8 HET MSE A 149 8 HET MSE B 18 8 HET MSE B 34 8 HET MSE B 60 8 HET MSE B 64 8 HET MSE B 83 8 HET MSE B 86 8 HET MSE B 149 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 HOH *315(H2 O) HELIX 1 1 SER A 2 ARG A 24 1 23 HELIX 2 2 GLY A 28 GLN A 39 1 12 HELIX 3 3 ARG A 43 HIS A 56 1 14 HELIX 4 4 SER A 59 ASP A 82 1 24 HELIX 5 5 THR A 97 TRP A 102 1 6 HELIX 6 6 ASP A 103 CYS A 122 1 20 HELIX 7 7 THR A 123 GLY A 128 5 6 HELIX 8 8 SER A 129 GLY A 145 1 17 HELIX 9 9 GLY A 148 GLU A 160 1 13 HELIX 10 10 THR A 167 THR A 179 1 13 HELIX 11 11 THR A 179 GLY A 195 1 17 HELIX 12 12 ARG A 198 ASP A 216 1 19 HELIX 13 13 THR A 242 GLY A 248 1 7 HELIX 14 14 ALA A 250 LEU A 267 1 18 HELIX 15 15 ALA A 268 ALA A 273 5 6 HELIX 16 16 ALA A 274 ILE A 285 1 12 HELIX 17 17 SER B 2 ARG B 24 1 23 HELIX 18 18 GLY B 28 ALA B 38 1 11 HELIX 19 19 ARG B 43 HIS B 56 1 14 HELIX 20 20 SER B 59 ASP B 82 1 24 HELIX 21 21 THR B 97 TRP B 102 1 6 HELIX 22 22 ASP B 103 CYS B 122 1 20 HELIX 23 23 THR B 123 GLY B 128 5 6 HELIX 24 24 SER B 129 GLY B 145 1 17 HELIX 25 25 GLY B 148 GLU B 160 1 13 HELIX 26 26 THR B 167 THR B 179 1 13 HELIX 27 27 THR B 179 GLY B 195 1 17 HELIX 28 28 ARG B 198 ASP B 220 1 23 HELIX 29 29 THR B 242 GLY B 248 1 7 HELIX 30 30 GLY B 248 ALA B 266 1 19 HELIX 31 31 LEU B 267 ALA B 273 5 7 HELIX 32 32 ALA B 274 GLU B 286 1 13 SHEET 1 A 2 LEU A 91 ARG A 92 0 SHEET 2 A 2 LEU A 95 PRO A 96 -1 O LEU A 95 N ARG A 92 SHEET 1 B 2 LEU B 91 ARG B 92 0 SHEET 2 B 2 LEU B 95 PRO B 96 -1 O LEU B 95 N ARG B 92 LINK C ALA A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N ALA A 19 1555 1555 1.34 LINK C ALA A 33 N MSE A 34 1555 1555 1.34 LINK C MSE A 34 N ALA A 35 1555 1555 1.33 LINK C SER A 59 N MSE A 60 1555 1555 1.34 LINK C MSE A 60 N ALA A 61 1555 1555 1.34 LINK C ALA A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N PRO A 65 1555 1555 1.35 LINK C ASP A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N PRO A 84 1555 1555 1.35 LINK C CYS A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N ASP A 87 1555 1555 1.33 LINK C GLY A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N VAL A 150 1555 1555 1.33 LINK C ALA B 17 N MSE B 18 1555 1555 1.34 LINK C MSE B 18 N ALA B 19 1555 1555 1.33 LINK C ALA B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N ALA B 35 1555 1555 1.33 LINK C SER B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N ALA B 61 1555 1555 1.33 LINK C ALA B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N PRO B 65 1555 1555 1.36 LINK C ASP B 82 N MSE B 83 1555 1555 1.34 LINK C MSE B 83 N PRO B 84 1555 1555 1.35 LINK C CYS B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N ASP B 87 1555 1555 1.33 LINK C GLY B 148 N MSE B 149 1555 1555 1.34 LINK C MSE B 149 N VAL B 150 1555 1555 1.34 CRYST1 49.230 90.680 133.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007519 0.00000