HEADER HYDROLASE 05-MAR-10 3M1T TITLE CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOHYDROLASE (YP_929327.1) FROM TITLE 2 SHEWANELLA AMAZONENSIS SB2B AT 1.62 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE SIGNAL TRANSDUCTION PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA AMAZONENSIS; SOURCE 3 ORGANISM_TAXID: 326297; SOURCE 4 STRAIN: ATCC BAA-1098 / SB2B; SOURCE 5 GENE: SAMA_3455; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE PHOSPHOHYDROLASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3M1T 1 REMARK SEQADV REVDAT 4 17-JUL-19 3M1T 1 REMARK LINK REVDAT 3 25-OCT-17 3M1T 1 REMARK REVDAT 2 13-JUL-11 3M1T 1 VERSN REVDAT 1 31-MAR-10 3M1T 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOHYDROLASE (YP_929327.1) JRNL TITL 2 FROM SHEWANELLA AMAZONENSIS SB2B AT 1.62 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1990 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2276 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1476 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3124 ; 1.567 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3664 ; 1.005 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 4.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;39.126 ;25.682 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;14.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2670 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 419 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1492 ; 0.935 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 602 ; 0.279 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 1.601 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 784 ; 2.764 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 708 ; 4.146 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3784 29.3753 11.5761 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.2006 REMARK 3 T33: 0.0854 T12: -0.0621 REMARK 3 T13: 0.0012 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7369 L22: 0.6419 REMARK 3 L33: 1.4229 L12: 0.3229 REMARK 3 L13: -0.2997 L23: 0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.1594 S13: -0.0147 REMARK 3 S21: -0.1084 S22: 0.0579 S23: 0.0257 REMARK 3 S31: 0.0046 S32: -0.3739 S33: -0.0187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM REMARK 3 RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION REMARK 3 PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING REMARK 3 PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE REMARK 3 RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.GLYCEROL REMARK 3 MOLECULE USED AS CRYOPROTECTANT IS MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3M1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97936,0.97925 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 29.348 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : 0.68400 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6000M (NH4)2SO4, 0.1M BICINE PH 9.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.52300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.04600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.04600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.52300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 59 REMARK 465 PHE A 60 REMARK 465 GLY A 61 REMARK 465 CYS A 62 REMARK 465 SER A 63 REMARK 465 ARG A 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CE NZ REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 ASP A 232 CG OD1 OD2 REMARK 470 LEU A 245 CG CD1 CD2 REMARK 470 LYS A 249 CE NZ REMARK 470 GLU A 257 OE1 OE2 REMARK 470 LYS A 261 CE NZ REMARK 470 LYS A 271 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 189 34.82 71.31 REMARK 500 HIS A 203 57.91 -148.38 REMARK 500 LYS A 249 57.49 -103.32 REMARK 500 VAL A 250 152.73 -47.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 275 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394107 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3M1T A 1 274 UNP A1SBA1 A1SBA1_SHEAM 1 274 SEQADV 3M1T GLY A 0 UNP A1SBA1 EXPRESSION TAG SEQRES 1 A 275 GLY MSE HIS SER ALA ALA LEU LEU GLN LYS VAL ASP GLU SEQRES 2 A 275 LEU PRO ARG LEU PRO LYS ALA ILE ALA GLU LEU LEU ASP SEQRES 3 A 275 VAL VAL ASN ASN GLU ASP SER THR VAL LYS ALA VAL SER SEQRES 4 A 275 GLU LYS LEU SER HIS ASP PRO VAL LEU SER ALA ARG VAL SEQRES 5 A 275 LEU ARG LEU ALA ASN SER ALA ARG PHE GLY CYS SER ARG SEQRES 6 A 275 GLU VAL GLY THR ILE ASP ASP ALA VAL VAL ARG LEU GLY SEQRES 7 A 275 MSE GLN THR LEU ARG THR LEU VAL ILE ALA SER ALA VAL SEQRES 8 A 275 VAL GLY ALA VAL PRO LYS VAL GLU GLY PHE ASP LEU ALA SEQRES 9 A 275 ASP PHE TRP GLY ASN THR PHE GLU VAL ALA ILE ILE CYS SEQRES 10 A 275 GLN GLU LEU ALA LYS ARG LEU GLY THR LEU PRO GLU GLU SEQRES 11 A 275 ALA PHE THR CYS GLY ILE LEU HIS SER ILE GLY GLU LEU SEQRES 12 A 275 LEU ILE VAL ASN GLY ASP PRO ALA VAL ALA ALA THR ILE SEQRES 13 A 275 SER ALA ALA VAL ALA ASP GLY ALA ASP ARG ASN LEU MSE SEQRES 14 A 275 GLU LYS GLU LEU LEU GLY TYR ASP ASN ALA GLU ILE GLY SEQRES 15 A 275 ALA LEU LEU ALA GLN SER TRP LYS PHE THR PRO HIS LEU SEQRES 16 A 275 VAL LYS GLY ILE GLN PHE GLN ASN HIS PRO LYS SER ALA SEQRES 17 A 275 GLU PRO TYR SER LYS LEU ALA GLY MSE LEU ALA MSE ALA SEQRES 18 A 275 LYS GLN ILE ALA ALA ASP TRP ASP LYS ILE PRO ASP ASP SEQRES 19 A 275 GLU ARG THR SER TRP LEU ALA GLN ILE ASN ILE LEU ALA SEQRES 20 A 275 GLY ILE LYS VAL ASP LEU GLY GLY LEU ALA GLU LYS LEU SEQRES 21 A 275 ALA LYS MSE HIS GLY GLN GLY MSE GLU MSE GLY LYS GLN SEQRES 22 A 275 LEU ALA MODRES 3M1T MSE A 1 MET SELENOMETHIONINE MODRES 3M1T MSE A 78 MET SELENOMETHIONINE MODRES 3M1T MSE A 168 MET SELENOMETHIONINE MODRES 3M1T MSE A 216 MET SELENOMETHIONINE MODRES 3M1T MSE A 219 MET SELENOMETHIONINE MODRES 3M1T MSE A 262 MET SELENOMETHIONINE MODRES 3M1T MSE A 267 MET SELENOMETHIONINE MODRES 3M1T MSE A 269 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 78 8 HET MSE A 168 8 HET MSE A 216 8 HET MSE A 219 8 HET MSE A 262 8 HET MSE A 267 8 HET MSE A 269 8 HET GOL A 275 12 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *247(H2 O) HELIX 1 1 SER A 3 GLN A 8 1 6 HELIX 2 2 LYS A 9 LEU A 13 5 5 HELIX 3 3 PRO A 17 ASN A 29 1 13 HELIX 4 4 THR A 33 HIS A 43 1 11 HELIX 5 5 ASP A 44 ASN A 56 1 13 HELIX 6 6 THR A 68 GLY A 77 1 10 HELIX 7 7 GLY A 77 VAL A 94 1 18 HELIX 8 8 ASP A 101 GLY A 124 1 24 HELIX 9 9 LEU A 126 HIS A 137 1 12 HELIX 10 10 SER A 138 ASP A 148 1 11 HELIX 11 11 ASP A 148 ASP A 161 1 14 HELIX 12 12 ASP A 164 GLY A 174 1 11 HELIX 13 13 ASP A 176 TRP A 188 1 13 HELIX 14 14 THR A 191 PHE A 200 1 10 HELIX 15 15 HIS A 203 ALA A 207 5 5 HELIX 16 16 SER A 211 TRP A 227 1 17 HELIX 17 17 ASP A 228 ILE A 230 5 3 HELIX 18 18 GLU A 234 GLY A 247 1 14 HELIX 19 19 GLY A 254 HIS A 263 1 10 HELIX 20 20 GLY A 264 GLN A 272 1 9 LINK C GLY A 0 N AMSE A 1 1555 1555 1.35 LINK C GLY A 0 N BMSE A 1 1555 1555 1.33 LINK C AMSE A 1 N HIS A 2 1555 1555 1.33 LINK C BMSE A 1 N HIS A 2 1555 1555 1.34 LINK C GLY A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N GLN A 79 1555 1555 1.33 LINK C LEU A 167 N MSE A 168 1555 1555 1.35 LINK C MSE A 168 N GLU A 169 1555 1555 1.33 LINK C GLY A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N LEU A 217 1555 1555 1.35 LINK C ALA A 218 N MSE A 219 1555 1555 1.32 LINK C MSE A 219 N ALA A 220 1555 1555 1.34 LINK C LYS A 261 N MSE A 262 1555 1555 1.32 LINK C MSE A 262 N HIS A 263 1555 1555 1.32 LINK C GLY A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N AGLU A 268 1555 1555 1.34 LINK C MSE A 267 N BGLU A 268 1555 1555 1.34 LINK C AGLU A 268 N MSE A 269 1555 1555 1.33 LINK C BGLU A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N GLY A 270 1555 1555 1.33 CISPEP 1 GLU A 208 PRO A 209 0 -7.51 SITE 1 AC1 8 LEU A 167 GLU A 171 ASP A 232 ASP A 233 SITE 2 AC1 8 GLU A 234 ARG A 235 HOH A 276 HOH A 295 CRYST1 69.729 69.729 124.569 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014341 0.008280 0.000000 0.00000 SCALE2 0.000000 0.016560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008028 0.00000