HEADER TRANSFERASE 08-MAR-10 3M2W TITLE CRYSTAL STRUCTURE OF MAPKAK KINASE 2 (MK2) COMPLEXED WITH A TITLE 2 SPIROAZETIDINE-TETRACYCLIC ATP SITE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP KINASE-ACTIVATED PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: MAPK-ACTIVATED PROTEIN KINASE 2, MAPKAP KINASE 2, MAPKAPK-2, COMPND 6 MK2; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPKAPK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)TUNER; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SMALL MOLECULE INHIBITOR, SPIROAZETIDINE-TETRACYCLE, ATP-SITE KINASE KEYWDS 2 INHIBITOR, NOVARTIS COMPOUND NVP-BXS169, ATP-BINDING, KINASE, KEYWDS 3 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KROEMER,L.REVESZ,C.BE,A.IZAAC,C.HUPPERTZ,A.SCHLAPBACH,C.SCHEUFLER REVDAT 3 21-FEB-24 3M2W 1 REMARK REVDAT 2 06-OCT-21 3M2W 1 REMARK SEQADV LINK REVDAT 1 28-JUL-10 3M2W 0 JRNL AUTH L.REVESZ,A.SCHLAPBACH,R.AICHHOLZ,J.DAWSON,R.FEIFEL,S.HAWTIN, JRNL AUTH 2 A.LITTLEWOOD-EVANS,G.KOCH,M.KROEMER,H.MOBITZ,C.SCHEUFLER, JRNL AUTH 3 J.VELCICKY,C.HUPPERTZ JRNL TITL IN VIVO AND IN VITRO SAR OF TETRACYCLIC MAPKAP-K2 (MK2) JRNL TITL 2 INHIBITORS. PART II. JRNL REF BIOORG.MED.CHEM.LETT. V. 20 4719 2010 JRNL REFN ISSN 0960-894X JRNL PMID 20591669 JRNL DOI 10.1016/J.BMCL.2010.04.023 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.61000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2445 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1673 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3311 ; 1.384 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4059 ; 0.790 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 5.939 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;35.074 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;15.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.676 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2693 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 476 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 1.459 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 618 ; 0.322 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2456 ; 2.731 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 915 ; 4.044 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 5.877 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00014 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE, 1.3M SODIUM MALONATE, PH REMARK 280 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.71650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.71650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.71650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 82.71650 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.71650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.71650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 3 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 PRO A 46 REMARK 465 ASN A 266 REMARK 465 HIS A 267 REMARK 465 GLY A 268 REMARK 465 LEU A 269 REMARK 465 ALA A 270 REMARK 465 ILE A 271 REMARK 465 SER A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 47 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 55 NZ REMARK 470 LYS A 64 CD CE NZ REMARK 470 THR A 66 OG1 CG2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 VAL A 69 CG1 CG2 REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 LEU A 72 CG CD1 CD2 REMARK 470 ILE A 74 CG1 CG2 CD1 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LEU A 79 CG CD1 CD2 REMARK 470 GLN A 80 CG CD OE1 NE2 REMARK 470 ARG A 85 CZ NH1 NH2 REMARK 470 GLN A 87 CD OE1 NE2 REMARK 470 LYS A 89 CD CE NZ REMARK 470 GLN A 96 CD OE1 NE2 REMARK 470 GLN A 113 CD OE1 NE2 REMARK 470 ARG A 131 CD NE CZ NH1 NH2 REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 ASN A 200 CG OD1 ND2 REMARK 470 GLU A 238 OE1 OE2 REMARK 470 SER A 265 OG REMARK 470 ARG A 280 NE CZ NH1 NH2 REMARK 470 LYS A 330 CD CE NZ REMARK 470 LYS A 346 CE NZ REMARK 470 GLU A 347 CD OE1 OE2 REMARK 470 GLU A 354 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 289 C - N - CA ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 74 22.19 -53.39 REMARK 500 ASN A 75 -7.22 -143.78 REMARK 500 GLN A 87 -5.96 63.90 REMARK 500 ARG A 153 107.72 -56.34 REMARK 500 ASP A 186 36.94 -144.04 REMARK 500 ARG A 198 129.90 -32.67 REMARK 500 ASP A 207 88.88 75.18 REMARK 500 CYS A 258 -16.20 -142.99 REMARK 500 GLN A 333 47.34 -83.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 365 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 2 O REMARK 620 2 SER A 112 O 89.9 REMARK 620 3 CYS A 114 O 84.7 103.3 REMARK 620 4 ILE A 117 O 153.2 116.9 88.2 REMARK 620 5 HOH A 366 O 72.8 138.4 112.1 86.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L8I A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 365 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KGA RELATED DB: PDB DBREF 3M2W A 47 364 UNP P49137 MAPK2_HUMAN 47 364 SEQADV 3M2W GLY A 45 UNP P49137 EXPRESSION TAG SEQADV 3M2W PRO A 46 UNP P49137 EXPRESSION TAG SEQADV 3M2W A UNP P49137 SER 216 DELETION SEQADV 3M2W A UNP P49137 HIS 217 DELETION SEQADV 3M2W A UNP P49137 ASN 218 DELETION SEQADV 3M2W A UNP P49137 SER 219 DELETION SEQADV 3M2W A UNP P49137 LEU 220 DELETION SEQADV 3M2W A UNP P49137 THR 221 DELETION SEQADV 3M2W A UNP P49137 THR 222 DELETION SEQADV 3M2W A UNP P49137 PRO 223 DELETION SEQADV 3M2W A UNP P49137 CYS 224 DELETION SEQADV 3M2W A UNP P49137 TYR 225 DELETION SEQADV 3M2W A UNP P49137 THR 226 DELETION SEQADV 3M2W A UNP P49137 PRO 227 DELETION SEQADV 3M2W A UNP P49137 TYR 228 DELETION SEQADV 3M2W A UNP P49137 TYR 229 DELETION SEQADV 3M2W A UNP P49137 VAL 230 DELETION SEQADV 3M2W A UNP P49137 ALA 231 DELETION SEQADV 3M2W A UNP P49137 PRO 232 DELETION SEQADV 3M2W A UNP P49137 GLU 233 DELETION SEQADV 3M2W A UNP P49137 VAL 234 DELETION SEQADV 3M2W A UNP P49137 LEU 235 DELETION SEQADV 3M2W A UNP P49137 GLY 236 DELETION SEQADV 3M2W GLY A 237 UNP P49137 PRO 237 ENGINEERED MUTATION SEQRES 1 A 299 GLY PRO HIS VAL LYS SER GLY LEU GLN ILE LYS LYS ASN SEQRES 2 A 299 ALA ILE ILE ASP ASP TYR LYS VAL THR SER GLN VAL LEU SEQRES 3 A 299 GLY LEU GLY ILE ASN GLY LYS VAL LEU GLN ILE PHE ASN SEQRES 4 A 299 LYS ARG THR GLN GLU LYS PHE ALA LEU LYS MET LEU GLN SEQRES 5 A 299 ASP CYS PRO LYS ALA ARG ARG GLU VAL GLU LEU HIS TRP SEQRES 6 A 299 ARG ALA SER GLN CYS PRO HIS ILE VAL ARG ILE VAL ASP SEQRES 7 A 299 VAL TYR GLU ASN LEU TYR ALA GLY ARG LYS CYS LEU LEU SEQRES 8 A 299 ILE VAL MET GLU CYS LEU ASP GLY GLY GLU LEU PHE SER SEQRES 9 A 299 ARG ILE GLN ASP ARG GLY ASP GLN ALA PHE THR GLU ARG SEQRES 10 A 299 GLU ALA SER GLU ILE MET LYS SER ILE GLY GLU ALA ILE SEQRES 11 A 299 GLN TYR LEU HIS SER ILE ASN ILE ALA HIS ARG ASP VAL SEQRES 12 A 299 LYS PRO GLU ASN LEU LEU TYR THR SER LYS ARG PRO ASN SEQRES 13 A 299 ALA ILE LEU LYS LEU THR ASP PHE GLY PHE ALA LYS GLU SEQRES 14 A 299 THR THR GLY GLU LYS TYR ASP LYS SER CYS ASP MET TRP SEQRES 15 A 299 SER LEU GLY VAL ILE MET TYR ILE LEU LEU CYS GLY TYR SEQRES 16 A 299 PRO PRO PHE TYR SER ASN HIS GLY LEU ALA ILE SER PRO SEQRES 17 A 299 GLY MET LYS THR ARG ILE ARG MET GLY GLN TYR GLU PHE SEQRES 18 A 299 PRO ASN PRO GLU TRP SER GLU VAL SER GLU GLU VAL LYS SEQRES 19 A 299 MET LEU ILE ARG ASN LEU LEU LYS THR GLU PRO THR GLN SEQRES 20 A 299 ARG MET THR ILE THR GLU PHE MET ASN HIS PRO TRP ILE SEQRES 21 A 299 MET GLN SER THR LYS VAL PRO GLN THR PRO LEU HIS THR SEQRES 22 A 299 SER ARG VAL LEU LYS GLU ASP LYS GLU ARG TRP GLU ASP SEQRES 23 A 299 VAL LYS GLU GLU MET THR SER ALA LEU ALA THR MET ARG HET L8I A 1 29 HET MG A 365 1 HETNAM L8I 2'-(2-FLUOROPHENYL)-1-METHYL-6',8',9',11'- HETNAM 2 L8I TETRAHYDROSPIRO[AZETIDINE-3,10'-PYRIDO[3',4':4, HETNAM 3 L8I 5]PYRROLO[2,3-F]ISOQUINOLIN]-7'(5'H)-ONE HETNAM MG MAGNESIUM ION FORMUL 2 L8I C23 H21 F N4 O FORMUL 3 MG MG 2+ FORMUL 4 HOH *135(H2 O) HELIX 1 1 ALA A 58 ASP A 61 5 4 HELIX 2 2 CYS A 98 SER A 112 1 15 HELIX 3 3 GLU A 145 ARG A 153 1 9 HELIX 4 4 THR A 159 ILE A 180 1 22 HELIX 5 5 LYS A 188 GLU A 190 5 3 HELIX 6 6 GLU A 238 ASP A 241 5 4 HELIX 7 7 LYS A 242 GLY A 259 1 18 HELIX 8 8 PRO A 287 SER A 292 1 6 HELIX 9 9 SER A 295 LEU A 306 1 12 HELIX 10 10 THR A 315 ASN A 321 1 7 HELIX 11 11 HIS A 322 GLN A 327 1 6 HELIX 12 12 SER A 328 VAL A 331 5 4 HELIX 13 13 HIS A 337 ASP A 345 1 9 HELIX 14 14 ARG A 348 ARG A 364 1 17 SHEET 1 A 5 TYR A 63 GLY A 73 0 SHEET 2 A 5 GLY A 76 ASN A 83 -1 O GLY A 76 N GLY A 73 SHEET 3 A 5 LYS A 89 GLN A 96 -1 O PHE A 90 N ILE A 81 SHEET 4 A 5 ARG A 131 MET A 138 -1 O ILE A 136 N LYS A 93 SHEET 5 A 5 ILE A 120 TYR A 128 -1 N ASN A 126 O CYS A 133 SHEET 1 B 2 ILE A 182 ALA A 183 0 SHEET 2 B 2 LYS A 212 GLU A 213 -1 O LYS A 212 N ALA A 183 SHEET 1 C 2 LEU A 192 TYR A 194 0 SHEET 2 C 2 LEU A 203 LEU A 205 -1 O LYS A 204 N LEU A 193 LINK O HOH A 2 MG MG A 365 1555 1555 2.46 LINK O SER A 112 MG MG A 365 1555 1555 2.33 LINK O CYS A 114 MG MG A 365 1555 1555 2.25 LINK O ILE A 117 MG MG A 365 1555 1555 2.27 LINK MG MG A 365 O HOH A 366 1555 1555 2.42 SITE 1 AC1 16 HOH A 11 LEU A 70 GLY A 71 LEU A 72 SITE 2 AC1 16 VAL A 78 ALA A 91 LYS A 93 MET A 138 SITE 3 AC1 16 GLU A 139 CYS A 140 LEU A 141 ASP A 142 SITE 4 AC1 16 GLU A 190 ASP A 207 HOH A 419 HOH A 428 SITE 1 AC2 5 HOH A 2 SER A 112 CYS A 114 ILE A 117 SITE 2 AC2 5 HOH A 366 CRYST1 102.982 102.982 165.433 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009710 0.005606 0.000000 0.00000 SCALE2 0.000000 0.011213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006045 0.00000