HEADER TRANSFERASE 09-MAR-10 3M3P TITLE CRYSTAL STRUCTURE OF GLUTAMINE AMIDO TRANSFERASE FROM METHYLOBACILLUS TITLE 2 FLAGELLATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE AMIDO TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 STRAIN: KT / ATCC 51484 / DSM 6875; SOURCE 5 GENE: MFLA_0438; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NYSGRC, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW KEYWDS 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,M.DOMAGALSKI,E.V.FEDOROV,S.K.BURLEY,W.MINOR,S.C.ALMO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 13-APR-22 3M3P 1 AUTHOR JRNL REVDAT 4 10-FEB-21 3M3P 1 AUTHOR JRNL SEQADV LINK REVDAT 3 13-JUL-11 3M3P 1 VERSN REVDAT 2 16-JUN-10 3M3P 1 REMARK SPRSDE REVDAT 1 23-MAR-10 3M3P 0 SPRSDE 16-JUN-10 3M3P 3L83 JRNL AUTH A.A.FEDOROV,M.DOMAGALSKI,E.V.FEDOROV,R.TORO,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,W.MINOR,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GLUTAMINE AMIDO TRANSFERASE FROM JRNL TITL 2 METHYLOBACILLUS FLAGELLATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 67.1 REMARK 3 NUMBER OF REFLECTIONS : 37566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 343 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 8.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 506 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : -0.30000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.17000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2061 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1374 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2818 ; 1.761 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3346 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 6.017 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;32.207 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 323 ;11.284 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2338 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 418 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1263 ; 0.936 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 507 ; 0.324 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2035 ; 1.529 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 798 ; 2.467 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 778 ; 3.609 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0430 12.2020 11.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1278 T22: 0.0787 REMARK 3 T33: 0.0466 T12: -0.0271 REMARK 3 T13: -0.0116 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 0.6611 L22: 5.6380 REMARK 3 L33: 5.7519 L12: 1.3175 REMARK 3 L13: -1.7354 L23: -1.9203 REMARK 3 S TENSOR REMARK 3 S11: 0.1531 S12: -0.1094 S13: -0.0886 REMARK 3 S21: 0.3270 S22: -0.2867 S23: -0.4670 REMARK 3 S31: -0.1255 S32: 0.2598 S33: 0.1336 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9060 13.1320 -7.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: 0.0114 REMARK 3 T33: 0.0025 T12: -0.0053 REMARK 3 T13: 0.0002 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3256 L22: 0.2312 REMARK 3 L33: 0.2886 L12: 0.0551 REMARK 3 L13: -0.0291 L23: 0.0188 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: -0.0160 S13: -0.0196 REMARK 3 S21: -0.0065 S22: -0.0011 S23: 0.0005 REMARK 3 S31: 0.0071 S32: 0.0158 S33: -0.0085 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8470 20.3880 17.3330 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.0695 REMARK 3 T33: 0.0512 T12: -0.0184 REMARK 3 T13: -0.0190 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0117 L22: 0.0267 REMARK 3 L33: 0.5411 L12: 0.0012 REMARK 3 L13: -0.0764 L23: 0.0228 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.0015 S13: -0.0076 REMARK 3 S21: 0.0313 S22: -0.0227 S23: -0.0289 REMARK 3 S31: 0.0646 S32: -0.0550 S33: 0.0276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 22.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 0.2M SODIUM FORMATE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 209 O HOH A 582 1.79 REMARK 500 NH1 ARG A 235 O HOH A 583 1.83 REMARK 500 O HOH A 367 O HOH A 583 1.85 REMARK 500 OE1 GLU A 126 O HOH A 579 2.13 REMARK 500 O SER A 2 O HOH A 587 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 261 O HOH A 563 1455 1.70 REMARK 500 O HOH A 564 O HOH A 702 1455 1.78 REMARK 500 O HOH A 337 O HOH A 570 1455 1.95 REMARK 500 OD2 ASP A 22 O HOH A 564 1655 2.00 REMARK 500 O HOH A 456 O HOH A 541 1556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE2 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 132 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 221 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 76.18 -109.61 REMARK 500 PRO A 58 47.11 -87.57 REMARK 500 CYS A 89 -114.44 58.17 REMARK 500 TRP A 139 79.62 -160.72 REMARK 500 LEU A 169 -41.10 -135.40 REMARK 500 LEU A 169 -41.10 -133.37 REMARK 500 HIS A 249 50.59 -140.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11175J RELATED DB: TARGETDB DBREF 3M3P A 4 242 UNP Q1H479 Q1H479_METFK 2 240 SEQADV 3M3P MSE A 1 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P SER A 2 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P LEU A 3 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P GLU A 243 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P GLY A 244 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P HIS A 245 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P HIS A 246 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P HIS A 247 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P HIS A 248 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P HIS A 249 UNP Q1H479 EXPRESSION TAG SEQADV 3M3P HIS A 250 UNP Q1H479 EXPRESSION TAG SEQRES 1 A 250 MSE SER LEU LYS PRO VAL MSE ILE ILE GLN PHE SER ALA SEQRES 2 A 250 SER GLU GLY PRO GLY HIS PHE GLY ASP PHE LEU ALA GLY SEQRES 3 A 250 GLU HIS ILE PRO PHE GLN VAL LEU ARG MSE ASP ARG SER SEQRES 4 A 250 ASP PRO LEU PRO ALA GLU ILE ARG ASP CYS SER GLY LEU SEQRES 5 A 250 ALA MSE MSE GLY GLY PRO MSE SER ALA ASN ASP ASP LEU SEQRES 6 A 250 PRO TRP MSE PRO THR LEU LEU ALA LEU ILE ARG ASP ALA SEQRES 7 A 250 VAL ALA GLN ARG VAL PRO VAL ILE GLY HIS CYS LEU GLY SEQRES 8 A 250 GLY GLN LEU LEU ALA LYS ALA MSE GLY GLY GLU VAL THR SEQRES 9 A 250 ASP SER PRO HIS ALA GLU ILE GLY TRP VAL ARG ALA TRP SEQRES 10 A 250 PRO GLN HIS VAL PRO GLN ALA LEU GLU TRP LEU GLY THR SEQRES 11 A 250 TRP ASP GLU LEU GLU LEU PHE GLU TRP HIS TYR GLN THR SEQRES 12 A 250 PHE SER ILE PRO PRO GLY ALA VAL HIS ILE LEU ARG SER SEQRES 13 A 250 GLU HIS CYS ALA ASN GLN ALA TYR VAL LEU ASP ASP LEU SEQRES 14 A 250 HIS ILE GLY PHE GLN CYS HIS ILE GLU MSE GLN ALA HIS SEQRES 15 A 250 MSE VAL ARG GLU TRP CYS SER ILE SER PRO GLU GLU LEU SEQRES 16 A 250 LYS GLY GLY ALA GLU ALA ASP PRO ALA GLN PRO MSE VAL SEQRES 17 A 250 GLN SER ALA VAL GLU ILE LEU ARG ASP LEU ASP VAL ARG SEQRES 18 A 250 ILE ALA THR LEU ASN ARG TRP ALA GLU HIS VAL TYR ALA SEQRES 19 A 250 ARG TRP ILE LYS GLY LEU GLN ARG GLU GLY HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS MODRES 3M3P MSE A 7 MET SELENOMETHIONINE MODRES 3M3P MSE A 36 MET SELENOMETHIONINE MODRES 3M3P MSE A 54 MET SELENOMETHIONINE MODRES 3M3P MSE A 55 MET SELENOMETHIONINE MODRES 3M3P MSE A 59 MET SELENOMETHIONINE MODRES 3M3P MSE A 68 MET SELENOMETHIONINE MODRES 3M3P MSE A 99 MET SELENOMETHIONINE MODRES 3M3P MSE A 179 MET SELENOMETHIONINE MODRES 3M3P MSE A 183 MET SELENOMETHIONINE MODRES 3M3P MSE A 207 MET SELENOMETHIONINE HET MSE A 7 8 HET MSE A 36 8 HET MSE A 54 8 HET MSE A 55 8 HET MSE A 59 13 HET MSE A 68 8 HET MSE A 99 8 HET MSE A 179 8 HET MSE A 183 8 HET MSE A 207 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HOH *506(H2 O) HELIX 1 1 PRO A 17 GLU A 27 1 11 HELIX 2 2 ASP A 37 SER A 39 5 3 HELIX 3 3 GLU A 45 CYS A 49 5 5 HELIX 4 4 TRP A 67 ARG A 82 1 16 HELIX 5 5 CYS A 89 MSE A 99 1 11 HELIX 6 6 VAL A 121 GLY A 129 1 9 HELIX 7 7 GLN A 180 SER A 191 1 12 HELIX 8 8 PRO A 192 LEU A 195 5 4 HELIX 9 9 SER A 210 ARG A 216 1 7 HELIX 10 10 ASP A 217 LYS A 238 1 22 SHEET 1 A 9 PHE A 31 ARG A 35 0 SHEET 2 A 9 VAL A 6 GLN A 10 1 N GLN A 10 O LEU A 34 SHEET 3 A 9 GLY A 51 MSE A 54 1 O ALA A 53 N ILE A 9 SHEET 4 A 9 VAL A 85 HIS A 88 1 O HIS A 88 N MSE A 54 SHEET 5 A 9 HIS A 170 PHE A 173 1 O PHE A 173 N GLY A 87 SHEET 6 A 9 CYS A 159 LEU A 166 -1 N LEU A 166 O HIS A 170 SHEET 7 A 9 ALA A 150 SER A 156 -1 N VAL A 151 O VAL A 165 SHEET 8 A 9 VAL A 103 PRO A 118 -1 N TRP A 117 O ARG A 155 SHEET 9 A 9 LEU A 134 PHE A 144 -1 O GLU A 138 N GLY A 112 LINK C VAL A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N ILE A 8 1555 1555 1.31 LINK C ARG A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N ASP A 37 1555 1555 1.32 LINK C ALA A 53 N MSE A 54 1555 1555 1.34 LINK C MSE A 54 N MSE A 55 1555 1555 1.32 LINK C MSE A 55 N GLY A 56 1555 1555 1.33 LINK C PRO A 58 N MSE A 59 1555 1555 1.32 LINK C MSE A 59 N SER A 60 1555 1555 1.32 LINK C TRP A 67 N MSE A 68 1555 1555 1.34 LINK C MSE A 68 N PRO A 69 1555 1555 1.33 LINK C ALA A 98 N MSE A 99 1555 1555 1.34 LINK C MSE A 99 N GLY A 100 1555 1555 1.33 LINK C GLU A 178 N MSE A 179 1555 1555 1.31 LINK C MSE A 179 N GLN A 180 1555 1555 1.33 LINK C HIS A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N VAL A 184 1555 1555 1.33 LINK C PRO A 206 N MSE A 207 1555 1555 1.35 LINK C MSE A 207 N VAL A 208 1555 1555 1.34 CRYST1 33.648 42.720 50.448 65.85 77.41 69.82 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029719 -0.010923 -0.002852 0.00000 SCALE2 0.000000 0.024939 -0.009763 0.00000 SCALE3 0.000000 0.000000 0.021812 0.00000