HEADER LYASE 10-MAR-10 3M47 TITLE CRYSTAL STRUCTURE OF THE MUTANT I218A OF OROTIDINE 5'-MONOPHOSPHATE TITLE 2 DECARBOXYLASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMP DECARBOXYLASE, OMPDCASE, OMPDECASE; COMPND 5 EC: 4.1.1.23; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS STR. SOURCE 3 DELTA H; SOURCE 4 ORGANISM_TAXID: 187420; SOURCE 5 GENE: PYRF, MTH_129; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE, MUTANT I218A, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,B.M.WOOD,J.A.GERLT,S.C.ALMO REVDAT 3 06-SEP-23 3M47 1 REMARK REVDAT 2 06-OCT-21 3M47 1 REMARK SEQADV REVDAT 1 16-JUN-10 3M47 0 JRNL AUTH B.M.WOOD,T.L.AMYES,A.A.FEDOROV,E.V.FEDOROV,A.SHABILA, JRNL AUTH 2 S.C.ALMO,J.P.RICHARD,J.A.GERLT JRNL TITL CONFORMATIONAL CHANGES IN OROTIDINE 5'-MONOPHOSPHATE JRNL TITL 2 DECARBOXYLASE: "REMOTE" RESIDUES THAT STABILIZE THE ACTIVE JRNL TITL 3 CONFORMATION. JRNL REF BIOCHEMISTRY V. 49 3514 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20369850 JRNL DOI 10.1021/BI100443A REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.0 REMARK 3 NUMBER OF REFLECTIONS : 98323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7110 - 3.7276 0.99 4298 243 0.1952 0.2158 REMARK 3 2 3.7276 - 2.9592 1.00 4168 216 0.2055 0.2291 REMARK 3 3 2.9592 - 2.5853 1.00 4092 246 0.2204 0.2422 REMARK 3 4 2.5853 - 2.3490 1.00 4123 225 0.2293 0.2547 REMARK 3 5 2.3490 - 2.1807 1.00 4061 206 0.2202 0.2524 REMARK 3 6 2.1807 - 2.0521 1.00 4066 225 0.2201 0.2311 REMARK 3 7 2.0521 - 1.9494 1.00 4085 216 0.2070 0.2214 REMARK 3 8 1.9494 - 1.8645 1.00 4040 209 0.2207 0.2426 REMARK 3 9 1.8645 - 1.7927 1.00 4035 225 0.2295 0.2687 REMARK 3 10 1.7927 - 1.7309 1.00 4034 222 0.2375 0.2771 REMARK 3 11 1.7309 - 1.6768 1.00 4022 206 0.2410 0.2631 REMARK 3 12 1.6768 - 1.6288 1.00 4014 228 0.2463 0.2636 REMARK 3 13 1.6288 - 1.5860 1.00 4059 204 0.2471 0.2728 REMARK 3 14 1.5860 - 1.5473 1.00 4019 209 0.2580 0.3075 REMARK 3 15 1.5473 - 1.5121 1.00 4024 203 0.2743 0.2797 REMARK 3 16 1.5121 - 1.4799 1.00 4067 197 0.2955 0.2943 REMARK 3 17 1.4799 - 1.4503 1.00 4009 214 0.3011 0.3077 REMARK 3 18 1.4503 - 1.4229 1.00 4018 191 0.3209 0.3142 REMARK 3 19 1.4229 - 1.3975 1.00 4015 200 0.3390 0.3291 REMARK 3 20 1.3975 - 1.3738 0.99 3990 192 0.3550 0.3691 REMARK 3 21 1.3738 - 1.3517 0.93 3682 195 0.3744 0.3868 REMARK 3 22 1.3517 - 1.3309 0.82 3339 179 0.3908 0.3181 REMARK 3 23 1.3309 - 1.3113 0.65 2605 138 0.3824 0.4000 REMARK 3 24 1.3113 - 1.2928 0.32 1254 65 0.4020 0.3880 REMARK 3 25 1.2928 - 1.2754 0.17 695 23 0.4445 0.3849 REMARK 3 26 1.2754 - 1.2588 0.05 186 8 0.4556 0.4539 REMARK 3 27 1.2588 - 1.2431 0.04 145 14 0.4094 0.4135 REMARK 3 28 1.2431 - 1.2281 0.01 51 3 0.4713 0.4930 REMARK 3 29 1.2281 - 1.2138 0.03 104 4 0.4284 0.6312 REMARK 3 30 1.2138 - 1.2000 0.03 114 3 0.4923 0.1982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 44.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3330 REMARK 3 ANGLE : 1.084 4490 REMARK 3 CHIRALITY : 0.075 511 REMARK 3 PLANARITY : 0.006 591 REMARK 3 DIHEDRAL : 14.483 1254 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3M47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 33.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3G18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.45250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.72600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.45400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.72600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.45250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.45400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 181 REMARK 465 VAL A 182 REMARK 465 GLY A 183 REMARK 465 ALA A 184 REMARK 465 GLN A 185 REMARK 465 GLY A 186 REMARK 465 GLY A 187 REMARK 465 ASP A 188 REMARK 465 PRO A 189 REMARK 465 LYS A 223 REMARK 465 ASP A 224 REMARK 465 LEU A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PRO A 228 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 181 REMARK 465 VAL B 182 REMARK 465 GLY B 183 REMARK 465 ALA B 184 REMARK 465 GLN B 185 REMARK 465 GLY B 186 REMARK 465 GLY B 187 REMARK 465 ASP B 188 REMARK 465 PRO B 189 REMARK 465 ASP B 224 REMARK 465 LEU B 225 REMARK 465 LEU B 226 REMARK 465 ASN B 227 REMARK 465 PRO B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GOL A 231 O HOH A 234 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 12.93 58.56 REMARK 500 LYS A 72 56.72 39.43 REMARK 500 ALA A 74 45.80 -151.49 REMARK 500 PHE A 134 -35.36 -134.55 REMARK 500 ARG A 160 86.85 76.97 REMARK 500 ALA B 74 46.41 -151.86 REMARK 500 PHE B 134 -36.06 -133.20 REMARK 500 ARG B 160 88.01 66.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 231 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G18 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM REMARK 900 METHANOBACTERIUM THERMOAUTOTROPHICUM REMARK 900 RELATED ID: 3M5Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT V182A,I218A OF OROTIDINE 5'- REMARK 900 MONOPHOSPHATE DECARBOXYLASE FROM METHANOBACTERIUM REMARK 900 THERMOAUTOTROPHICUM REMARK 900 RELATED ID: 3M5Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT V182A,V201A OF OROTIDINE 5'- REMARK 900 MONOPHOSPHATE DECARBOXYLASE FROM METHANOBACTERIUM REMARK 900 THERMOAUTOTROPHICUM REMARK 900 RELATED ID: 3M5X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT V182A,I199A OF OROTIDINE 5'- REMARK 900 MONOPHOSPHATE DECARBOXYLASE FROM METHANOBACTERIUM REMARK 900 THERMOAUTOTROPHICUM REMARK 900 RELATED ID: 3M44 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT V201A OF OROTIDINE 5'-MONOPHOSPHATE REMARK 900 DECARBOXYLASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM REMARK 900 RELATED ID: 3M43 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT I199A OF OROTIDINE 5'-MONOPHOSPHATE REMARK 900 DECARBOXYLASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM REMARK 900 RELATED ID: 3M41 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT V182A OF OROTIDINE 5'-MONOPHOSPHATE REMARK 900 DECARBOXYLASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM REMARK 900 RELATED ID: 3M1Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT V182A,V201A OF OROTIDINE 5'- REMARK 900 MONOPHOSPHATE' DECARBOXYLASE FROM METHANOBACTERIUM REMARK 900 THERMOAUTOTROPHICUM COMPLEXED WITH INHIBITOR BMP DBREF 3M47 A 1 228 UNP O26232 PYRF_METTH 1 228 DBREF 3M47 B 1 228 UNP O26232 PYRF_METTH 1 228 SEQADV 3M47 PRO A 101 UNP O26232 ARG 101 ENGINEERED MUTATION SEQADV 3M47 ALA A 218 UNP O26232 ILE 218 ENGINEERED MUTATION SEQADV 3M47 PRO B 101 UNP O26232 ARG 101 ENGINEERED MUTATION SEQADV 3M47 ALA B 218 UNP O26232 ILE 218 ENGINEERED MUTATION SEQRES 1 A 228 MET ARG SER ARG ARG VAL ASP VAL MET ASP VAL MET ASN SEQRES 2 A 228 ARG LEU ILE LEU ALA MET ASP LEU MET ASN ARG ASP ASP SEQRES 3 A 228 ALA LEU ARG VAL THR GLY GLU VAL ARG GLU TYR ILE ASP SEQRES 4 A 228 THR VAL LYS ILE GLY TYR PRO LEU VAL LEU SER GLU GLY SEQRES 5 A 228 MET ASP ILE ILE ALA GLU PHE ARG LYS ARG PHE GLY CYS SEQRES 6 A 228 ARG ILE ILE ALA ASP PHE LYS VAL ALA ASP ILE PRO GLU SEQRES 7 A 228 THR ASN GLU LYS ILE CYS ARG ALA THR PHE LYS ALA GLY SEQRES 8 A 228 ALA ASP ALA ILE ILE VAL HIS GLY PHE PRO GLY ALA ASP SEQRES 9 A 228 SER VAL ARG ALA CYS LEU ASN VAL ALA GLU GLU MET GLY SEQRES 10 A 228 ARG GLU VAL PHE LEU LEU THR GLU MET SER HIS PRO GLY SEQRES 11 A 228 ALA GLU MET PHE ILE GLN GLY ALA ALA ASP GLU ILE ALA SEQRES 12 A 228 ARG MET GLY VAL ASP LEU GLY VAL LYS ASN TYR VAL GLY SEQRES 13 A 228 PRO SER THR ARG PRO GLU ARG LEU SER ARG LEU ARG GLU SEQRES 14 A 228 ILE ILE GLY GLN ASP SER PHE LEU ILE SER PRO GLY VAL SEQRES 15 A 228 GLY ALA GLN GLY GLY ASP PRO GLY GLU THR LEU ARG PHE SEQRES 16 A 228 ALA ASP ALA ILE ILE VAL GLY ARG SER ILE TYR LEU ALA SEQRES 17 A 228 ASP ASN PRO ALA ALA ALA ALA ALA GLY ALA ILE GLU SER SEQRES 18 A 228 ILE LYS ASP LEU LEU ASN PRO SEQRES 1 B 228 MET ARG SER ARG ARG VAL ASP VAL MET ASP VAL MET ASN SEQRES 2 B 228 ARG LEU ILE LEU ALA MET ASP LEU MET ASN ARG ASP ASP SEQRES 3 B 228 ALA LEU ARG VAL THR GLY GLU VAL ARG GLU TYR ILE ASP SEQRES 4 B 228 THR VAL LYS ILE GLY TYR PRO LEU VAL LEU SER GLU GLY SEQRES 5 B 228 MET ASP ILE ILE ALA GLU PHE ARG LYS ARG PHE GLY CYS SEQRES 6 B 228 ARG ILE ILE ALA ASP PHE LYS VAL ALA ASP ILE PRO GLU SEQRES 7 B 228 THR ASN GLU LYS ILE CYS ARG ALA THR PHE LYS ALA GLY SEQRES 8 B 228 ALA ASP ALA ILE ILE VAL HIS GLY PHE PRO GLY ALA ASP SEQRES 9 B 228 SER VAL ARG ALA CYS LEU ASN VAL ALA GLU GLU MET GLY SEQRES 10 B 228 ARG GLU VAL PHE LEU LEU THR GLU MET SER HIS PRO GLY SEQRES 11 B 228 ALA GLU MET PHE ILE GLN GLY ALA ALA ASP GLU ILE ALA SEQRES 12 B 228 ARG MET GLY VAL ASP LEU GLY VAL LYS ASN TYR VAL GLY SEQRES 13 B 228 PRO SER THR ARG PRO GLU ARG LEU SER ARG LEU ARG GLU SEQRES 14 B 228 ILE ILE GLY GLN ASP SER PHE LEU ILE SER PRO GLY VAL SEQRES 15 B 228 GLY ALA GLN GLY GLY ASP PRO GLY GLU THR LEU ARG PHE SEQRES 16 B 228 ALA ASP ALA ILE ILE VAL GLY ARG SER ILE TYR LEU ALA SEQRES 17 B 228 ASP ASN PRO ALA ALA ALA ALA ALA GLY ALA ILE GLU SER SEQRES 18 B 228 ILE LYS ASP LEU LEU ASN PRO HET GOL A 229 6 HET GOL A 230 6 HET GOL A 231 6 HET GOL B 229 6 HET GOL B 230 6 HET GOL B 231 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 HOH *238(H2 O) HELIX 1 1 VAL A 11 ASN A 13 5 3 HELIX 2 2 ASN A 23 GLU A 33 1 11 HELIX 3 3 TYR A 45 GLY A 52 1 8 HELIX 4 4 MET A 53 GLY A 64 1 12 HELIX 5 5 ILE A 76 ALA A 90 1 15 HELIX 6 6 GLY A 102 GLY A 117 1 16 HELIX 7 7 HIS A 128 MET A 133 5 6 HELIX 8 8 PHE A 134 LEU A 149 1 16 HELIX 9 9 ARG A 160 GLY A 172 1 13 HELIX 10 10 GLU A 191 PHE A 195 5 5 HELIX 11 11 GLY A 202 LEU A 207 1 6 HELIX 12 12 ASN A 210 ILE A 222 1 13 HELIX 13 13 VAL B 11 ASN B 13 5 3 HELIX 14 14 ASN B 23 GLU B 33 1 11 HELIX 15 15 TYR B 45 GLY B 52 1 8 HELIX 16 16 MET B 53 GLY B 64 1 12 HELIX 17 17 ILE B 76 ALA B 90 1 15 HELIX 18 18 GLY B 102 GLY B 117 1 16 HELIX 19 19 HIS B 128 MET B 133 5 6 HELIX 20 20 PHE B 134 LEU B 149 1 16 HELIX 21 21 ARG B 160 GLY B 172 1 13 HELIX 22 22 GLU B 191 PHE B 195 5 5 HELIX 23 23 GLY B 202 LEU B 207 1 6 HELIX 24 24 ASN B 210 ILE B 222 1 13 SHEET 1 A 9 LEU A 15 ALA A 18 0 SHEET 2 A 9 THR A 40 GLY A 44 1 O LYS A 42 N LEU A 17 SHEET 3 A 9 ARG A 66 VAL A 73 1 O ASP A 70 N ILE A 43 SHEET 4 A 9 ALA A 94 HIS A 98 1 O ALA A 94 N ALA A 69 SHEET 5 A 9 GLU A 119 LEU A 123 1 O PHE A 121 N ILE A 95 SHEET 6 A 9 ASN A 153 VAL A 155 1 O ASN A 153 N LEU A 122 SHEET 7 A 9 PHE A 176 SER A 179 1 O PHE A 176 N TYR A 154 SHEET 8 A 9 ALA A 198 VAL A 201 1 O ILE A 200 N SER A 179 SHEET 9 A 9 LEU A 15 ALA A 18 1 N ILE A 16 O ILE A 199 SHEET 1 B 9 LEU B 15 ALA B 18 0 SHEET 2 B 9 THR B 40 GLY B 44 1 O LYS B 42 N LEU B 17 SHEET 3 B 9 ARG B 66 VAL B 73 1 O ASP B 70 N ILE B 43 SHEET 4 B 9 ALA B 94 HIS B 98 1 O ALA B 94 N ALA B 69 SHEET 5 B 9 GLU B 119 LEU B 123 1 O PHE B 121 N ILE B 95 SHEET 6 B 9 ASN B 153 VAL B 155 1 O ASN B 153 N LEU B 122 SHEET 7 B 9 PHE B 176 SER B 179 1 O PHE B 176 N TYR B 154 SHEET 8 B 9 ALA B 198 VAL B 201 1 O ILE B 200 N SER B 179 SHEET 9 B 9 LEU B 15 ALA B 18 1 N ILE B 16 O ILE B 199 SITE 1 AC1 3 ASP A 70 LYS A 72 ILE A 96 SITE 1 AC2 5 GLY A 32 ARG A 35 ARG A 62 PHE A 63 SITE 2 AC2 5 GLU A 114 SITE 1 AC3 8 ARG A 5 ARG A 168 GLN A 173 SER A 175 SITE 2 AC3 8 PHE A 195 ASP A 197 HOH A 234 HOH A 340 SITE 1 AC4 9 ARG B 5 ARG B 168 GLN B 173 SER B 175 SITE 2 AC4 9 ARG B 194 PHE B 195 ASP B 197 HOH B 311 SITE 3 AC4 9 HOH B 330 SITE 1 AC5 3 LYS B 42 ASP B 70 LYS B 72 SITE 1 AC6 5 GLY B 32 ARG B 35 ARG B 62 PHE B 63 SITE 2 AC6 5 GLU B 114 CRYST1 56.905 56.908 125.452 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007971 0.00000