HEADER HYDROLASE 11-MAR-10 3M4F TITLE STRUCTURAL INSIGHTS INTO THE ACIDOPHILIC PH ADAPTATION OF A NOVEL TITLE 2 ENDO-1,4-BETA-XYLANASE FROM SCYTALIDIUM ACIDOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.2.1.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCYTALIDIUM ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 241811; SOURCE 4 GENE: XYL1; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS FAMILY 11 ENDOXYLANASE, ACIDOPHILIC ADAPTATION, STRUCTURE/FUNCTION KEYWDS 2 RELATIONSHIP, GLYCOSIDASE, HYDROLASE, XYLAN DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR C.MICHAUX,J.WOUTERS REVDAT 3 01-NOV-23 3M4F 1 REMARK REVDAT 2 06-OCT-10 3M4F 1 JRNL REVDAT 1 28-JUL-10 3M4F 0 JRNL AUTH C.MICHAUX,J.POUYEZ,A.MAYARD,P.VANDURM,I.HOUSEN,J.WOUTERS JRNL TITL STRUCTURAL INSIGHTS INTO THE ACIDOPHILIC PH ADAPTATION OF A JRNL TITL 2 NOVEL ENDO-1,4-BETA-XYLANASE FROM SCYTALIDIUM ACIDOPHILUM JRNL REF BIOCHIMIE V. 92 1407 2010 JRNL REFN ISSN 0300-9084 JRNL PMID 20621155 JRNL DOI 10.1016/J.BIOCHI.2010.07.003 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 74004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5068 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 241 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 735 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5698 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7794 ; 1.406 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 7.756 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 284 ;34.748 ;24.648 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 688 ;11.847 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.288 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 802 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4588 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2605 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3913 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 679 ; 0.256 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 58 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3602 ; 0.758 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5651 ; 1.294 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2516 ; 2.001 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2143 ; 2.634 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80178 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.13500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 1BK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 100MM CAPS (PH REMARK 280 10.5) AND 200MM SULPHATE LITHIUM, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 72.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 72.33000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 72.33000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 72.33000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 72.33000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 72.33000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 72.33000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 72.33000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 72.33000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 72.33000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 72.33000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 72.33000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 72.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PHE A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 ILE A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 LYS A 23 REMARK 465 ARG A 24 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PHE B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 ILE B 7 REMARK 465 ALA B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 LEU B 11 REMARK 465 ALA B 12 REMARK 465 VAL B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 THR B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 PRO B 19 REMARK 465 THR B 20 REMARK 465 THR B 21 REMARK 465 GLU B 22 REMARK 465 LYS B 23 REMARK 465 ARG B 24 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 PHE C 3 REMARK 465 THR C 4 REMARK 465 LEU C 5 REMARK 465 THR C 6 REMARK 465 ILE C 7 REMARK 465 ALA C 8 REMARK 465 GLY C 9 REMARK 465 LEU C 10 REMARK 465 LEU C 11 REMARK 465 ALA C 12 REMARK 465 VAL C 13 REMARK 465 GLY C 14 REMARK 465 SER C 15 REMARK 465 THR C 16 REMARK 465 ALA C 17 REMARK 465 ALA C 18 REMARK 465 PRO C 19 REMARK 465 THR C 20 REMARK 465 THR C 21 REMARK 465 GLU C 22 REMARK 465 LYS C 23 REMARK 465 ARG C 24 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 PHE D 3 REMARK 465 THR D 4 REMARK 465 LEU D 5 REMARK 465 THR D 6 REMARK 465 ILE D 7 REMARK 465 ALA D 8 REMARK 465 GLY D 9 REMARK 465 LEU D 10 REMARK 465 LEU D 11 REMARK 465 ALA D 12 REMARK 465 VAL D 13 REMARK 465 GLY D 14 REMARK 465 SER D 15 REMARK 465 THR D 16 REMARK 465 ALA D 17 REMARK 465 ALA D 18 REMARK 465 PRO D 19 REMARK 465 THR D 20 REMARK 465 THR D 21 REMARK 465 GLU D 22 REMARK 465 LYS D 23 REMARK 465 ARG D 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 138 O HOH A 223 2.16 REMARK 500 O ASP A 38 O HOH A 569 2.18 REMARK 500 OD1 ASP B 111 O HOH B 297 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR C 31 O HOH B 652 7454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 17.02 -143.66 REMARK 500 ASP A 56 90.01 -166.20 REMARK 500 ASN A 185 -148.04 -95.45 REMARK 500 ASP B 30 16.69 -145.03 REMARK 500 ASP B 56 93.57 -173.26 REMARK 500 ASP B 182 13.61 -146.17 REMARK 500 ASN B 185 -151.64 -95.21 REMARK 500 PHE B 194 -4.02 -143.08 REMARK 500 ASP C 30 18.06 -145.72 REMARK 500 ASP C 56 97.39 -167.31 REMARK 500 ASN C 185 -147.41 -93.01 REMARK 500 ASP D 30 15.24 -144.57 REMARK 500 ASP D 56 90.15 -166.07 REMARK 500 SER D 126 132.71 -171.25 REMARK 500 ILE D 144 0.24 -68.47 REMARK 500 ASP D 182 12.37 -142.99 REMARK 500 ASN D 185 -149.57 -94.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS C 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS D 206 DBREF 3M4F A 1 205 UNP Q6VAY1 Q6VAY1_9ASCO 1 205 DBREF 3M4F B 1 205 UNP Q6VAY1 Q6VAY1_9ASCO 1 205 DBREF 3M4F C 1 205 UNP Q6VAY1 Q6VAY1_9ASCO 1 205 DBREF 3M4F D 1 205 UNP Q6VAY1 Q6VAY1_9ASCO 1 205 SEQRES 1 A 205 MET LYS PHE THR LEU THR ILE ALA GLY LEU LEU ALA VAL SEQRES 2 A 205 GLY SER THR ALA ALA PRO THR THR GLU LYS ARG ASN PRO SEQRES 3 A 205 GLY GLY ILE ASP TYR VAL GLN ASN TYR ASN GLY ASP VAL SEQRES 4 A 205 ALA ASP PHE GLN TYR ASN GLU GLY ALA GLY THR TYR THR SEQRES 5 A 205 CYS GLY TRP ASP GLY SER THR ASP PHE VAL VAL GLY LEU SEQRES 6 A 205 GLY TRP SER THR GLY ALA ALA ARG ASP ILE THR TYR SER SEQRES 7 A 205 ALA THR TYR ASN ALA GLY GLY SER GLY SER TYR LEU ALA SEQRES 8 A 205 VAL TYR GLY TRP VAL ASN SER PRO GLN ALA GLU TYR TYR SEQRES 9 A 205 ILE VAL GLU SER TYR GLY ASP TYR ASN PRO CYS SER ASN SEQRES 10 A 205 ALA GLU GLY LEU GLY THR LEU GLU SER ASP GLY SER THR SEQRES 11 A 205 TYR THR VAL CYS THR ASP THR ARG THR ASN GLU PRO SER SEQRES 12 A 205 ILE THR GLY THR SER THR PHE THR GLN TYR TRP SER VAL SEQRES 13 A 205 ARG GLN SER GLU ARG THR SER GLY THR VAL THR VAL GLY SEQRES 14 A 205 ASN HIS PHE ASN TYR TRP ALA GLN HIS GLY PHE GLY ASP SEQRES 15 A 205 SER TYR ASN PHE GLN VAL MET ALA VAL GLU ALA PHE SER SEQRES 16 A 205 GLY SER GLY SER ALA SER VAL SER VAL SER SEQRES 1 B 205 MET LYS PHE THR LEU THR ILE ALA GLY LEU LEU ALA VAL SEQRES 2 B 205 GLY SER THR ALA ALA PRO THR THR GLU LYS ARG ASN PRO SEQRES 3 B 205 GLY GLY ILE ASP TYR VAL GLN ASN TYR ASN GLY ASP VAL SEQRES 4 B 205 ALA ASP PHE GLN TYR ASN GLU GLY ALA GLY THR TYR THR SEQRES 5 B 205 CYS GLY TRP ASP GLY SER THR ASP PHE VAL VAL GLY LEU SEQRES 6 B 205 GLY TRP SER THR GLY ALA ALA ARG ASP ILE THR TYR SER SEQRES 7 B 205 ALA THR TYR ASN ALA GLY GLY SER GLY SER TYR LEU ALA SEQRES 8 B 205 VAL TYR GLY TRP VAL ASN SER PRO GLN ALA GLU TYR TYR SEQRES 9 B 205 ILE VAL GLU SER TYR GLY ASP TYR ASN PRO CYS SER ASN SEQRES 10 B 205 ALA GLU GLY LEU GLY THR LEU GLU SER ASP GLY SER THR SEQRES 11 B 205 TYR THR VAL CYS THR ASP THR ARG THR ASN GLU PRO SER SEQRES 12 B 205 ILE THR GLY THR SER THR PHE THR GLN TYR TRP SER VAL SEQRES 13 B 205 ARG GLN SER GLU ARG THR SER GLY THR VAL THR VAL GLY SEQRES 14 B 205 ASN HIS PHE ASN TYR TRP ALA GLN HIS GLY PHE GLY ASP SEQRES 15 B 205 SER TYR ASN PHE GLN VAL MET ALA VAL GLU ALA PHE SER SEQRES 16 B 205 GLY SER GLY SER ALA SER VAL SER VAL SER SEQRES 1 C 205 MET LYS PHE THR LEU THR ILE ALA GLY LEU LEU ALA VAL SEQRES 2 C 205 GLY SER THR ALA ALA PRO THR THR GLU LYS ARG ASN PRO SEQRES 3 C 205 GLY GLY ILE ASP TYR VAL GLN ASN TYR ASN GLY ASP VAL SEQRES 4 C 205 ALA ASP PHE GLN TYR ASN GLU GLY ALA GLY THR TYR THR SEQRES 5 C 205 CYS GLY TRP ASP GLY SER THR ASP PHE VAL VAL GLY LEU SEQRES 6 C 205 GLY TRP SER THR GLY ALA ALA ARG ASP ILE THR TYR SER SEQRES 7 C 205 ALA THR TYR ASN ALA GLY GLY SER GLY SER TYR LEU ALA SEQRES 8 C 205 VAL TYR GLY TRP VAL ASN SER PRO GLN ALA GLU TYR TYR SEQRES 9 C 205 ILE VAL GLU SER TYR GLY ASP TYR ASN PRO CYS SER ASN SEQRES 10 C 205 ALA GLU GLY LEU GLY THR LEU GLU SER ASP GLY SER THR SEQRES 11 C 205 TYR THR VAL CYS THR ASP THR ARG THR ASN GLU PRO SER SEQRES 12 C 205 ILE THR GLY THR SER THR PHE THR GLN TYR TRP SER VAL SEQRES 13 C 205 ARG GLN SER GLU ARG THR SER GLY THR VAL THR VAL GLY SEQRES 14 C 205 ASN HIS PHE ASN TYR TRP ALA GLN HIS GLY PHE GLY ASP SEQRES 15 C 205 SER TYR ASN PHE GLN VAL MET ALA VAL GLU ALA PHE SER SEQRES 16 C 205 GLY SER GLY SER ALA SER VAL SER VAL SER SEQRES 1 D 205 MET LYS PHE THR LEU THR ILE ALA GLY LEU LEU ALA VAL SEQRES 2 D 205 GLY SER THR ALA ALA PRO THR THR GLU LYS ARG ASN PRO SEQRES 3 D 205 GLY GLY ILE ASP TYR VAL GLN ASN TYR ASN GLY ASP VAL SEQRES 4 D 205 ALA ASP PHE GLN TYR ASN GLU GLY ALA GLY THR TYR THR SEQRES 5 D 205 CYS GLY TRP ASP GLY SER THR ASP PHE VAL VAL GLY LEU SEQRES 6 D 205 GLY TRP SER THR GLY ALA ALA ARG ASP ILE THR TYR SER SEQRES 7 D 205 ALA THR TYR ASN ALA GLY GLY SER GLY SER TYR LEU ALA SEQRES 8 D 205 VAL TYR GLY TRP VAL ASN SER PRO GLN ALA GLU TYR TYR SEQRES 9 D 205 ILE VAL GLU SER TYR GLY ASP TYR ASN PRO CYS SER ASN SEQRES 10 D 205 ALA GLU GLY LEU GLY THR LEU GLU SER ASP GLY SER THR SEQRES 11 D 205 TYR THR VAL CYS THR ASP THR ARG THR ASN GLU PRO SER SEQRES 12 D 205 ILE THR GLY THR SER THR PHE THR GLN TYR TRP SER VAL SEQRES 13 D 205 ARG GLN SER GLU ARG THR SER GLY THR VAL THR VAL GLY SEQRES 14 D 205 ASN HIS PHE ASN TYR TRP ALA GLN HIS GLY PHE GLY ASP SEQRES 15 D 205 SER TYR ASN PHE GLN VAL MET ALA VAL GLU ALA PHE SER SEQRES 16 D 205 GLY SER GLY SER ALA SER VAL SER VAL SER HET CXS A 206 14 HET CXS A 207 14 HET CXS B 206 14 HET CXS C 206 14 HET CXS D 206 14 HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID FORMUL 5 CXS 5(C9 H19 N O3 S) FORMUL 10 HOH *735(H2 O) HELIX 1 1 ASN A 25 ILE A 29 5 5 HELIX 2 2 ASN A 36 ALA A 40 5 5 HELIX 3 3 VAL A 168 ALA A 176 1 9 HELIX 4 4 GLN A 177 GLY A 179 5 3 HELIX 5 5 ASN B 25 ILE B 29 5 5 HELIX 6 6 ASN B 36 ALA B 40 5 5 HELIX 7 7 VAL B 168 ALA B 176 1 9 HELIX 8 8 GLN B 177 GLY B 179 5 3 HELIX 9 9 ASN C 25 ILE C 29 5 5 HELIX 10 10 ASN C 36 ASP C 41 5 6 HELIX 11 11 VAL C 168 GLN C 177 1 10 HELIX 12 12 ASN D 25 ILE D 29 5 5 HELIX 13 13 ASN D 36 ASP D 41 5 6 HELIX 14 14 VAL D 168 GLN D 177 1 10 SHEET 1 A 8 TYR A 31 TYR A 35 0 SHEET 2 A 8 PHE A 61 TRP A 67 -1 O VAL A 62 N TYR A 35 SHEET 3 A 8 TYR A 184 SER A 195 -1 O GLN A 187 N TRP A 67 SHEET 4 A 8 GLY A 87 VAL A 96 -1 N ALA A 91 O ALA A 190 SHEET 5 A 8 ALA A 101 TYR A 109 -1 O SER A 108 N LEU A 90 SHEET 6 A 8 GLY A 146 ARG A 157 1 O ARG A 157 N VAL A 106 SHEET 7 A 8 SER A 129 SER A 143 -1 N THR A 132 O VAL A 156 SHEET 8 A 8 GLU A 119 SER A 126 -1 N LEU A 121 O VAL A 133 SHEET 1 B 5 GLN A 43 ASN A 45 0 SHEET 2 B 5 THR A 50 ASP A 56 -1 O THR A 52 N GLN A 43 SHEET 3 B 5 SER A 197 VAL A 204 -1 O VAL A 202 N TYR A 51 SHEET 4 B 5 ASP A 74 ASN A 82 -1 N ASN A 82 O SER A 199 SHEET 5 B 5 SER A 163 THR A 167 -1 O VAL A 166 N ILE A 75 SHEET 1 C 8 TYR B 31 TYR B 35 0 SHEET 2 C 8 PHE B 61 TRP B 67 -1 O VAL B 62 N TYR B 35 SHEET 3 C 8 TYR B 184 SER B 195 -1 O GLN B 187 N TRP B 67 SHEET 4 C 8 GLY B 87 VAL B 96 -1 N ALA B 91 O ALA B 190 SHEET 5 C 8 ALA B 101 TYR B 109 -1 O TYR B 103 N GLY B 94 SHEET 6 C 8 GLY B 146 ARG B 157 1 O SER B 155 N VAL B 106 SHEET 7 C 8 SER B 129 SER B 143 -1 N ASP B 136 O GLN B 152 SHEET 8 C 8 GLU B 119 SER B 126 -1 N LEU B 121 O VAL B 133 SHEET 1 D 5 GLN B 43 ASN B 45 0 SHEET 2 D 5 THR B 50 ASP B 56 -1 O THR B 50 N ASN B 45 SHEET 3 D 5 SER B 197 SER B 205 -1 O VAL B 202 N TYR B 51 SHEET 4 D 5 ASP B 74 ASN B 82 -1 N ASN B 82 O SER B 199 SHEET 5 D 5 SER B 163 THR B 167 -1 O VAL B 166 N ILE B 75 SHEET 1 E 8 TYR C 31 TYR C 35 0 SHEET 2 E 8 PHE C 61 TRP C 67 -1 O VAL C 62 N TYR C 35 SHEET 3 E 8 TYR C 184 SER C 195 -1 O GLN C 187 N TRP C 67 SHEET 4 E 8 GLY C 87 VAL C 96 -1 N ALA C 91 O ALA C 190 SHEET 5 E 8 ALA C 101 TYR C 109 -1 O TYR C 103 N GLY C 94 SHEET 6 E 8 GLY C 146 ARG C 157 1 O ARG C 157 N VAL C 106 SHEET 7 E 8 SER C 129 SER C 143 -1 N THR C 132 O VAL C 156 SHEET 8 E 8 GLU C 119 SER C 126 -1 N LEU C 121 O VAL C 133 SHEET 1 F 5 GLN C 43 ASN C 45 0 SHEET 2 F 5 THR C 50 ASP C 56 -1 O THR C 50 N ASN C 45 SHEET 3 F 5 SER C 197 SER C 205 -1 O VAL C 202 N TYR C 51 SHEET 4 F 5 ASP C 74 ASN C 82 -1 N ASN C 82 O SER C 199 SHEET 5 F 5 SER C 163 THR C 167 -1 O VAL C 166 N ILE C 75 SHEET 1 G 8 TYR D 31 TYR D 35 0 SHEET 2 G 8 PHE D 61 TRP D 67 -1 O VAL D 62 N TYR D 35 SHEET 3 G 8 TYR D 184 SER D 195 -1 O GLN D 187 N TRP D 67 SHEET 4 G 8 GLY D 87 VAL D 96 -1 N ALA D 91 O ALA D 190 SHEET 5 G 8 ALA D 101 TYR D 109 -1 O TYR D 103 N GLY D 94 SHEET 6 G 8 GLY D 146 ARG D 157 1 O SER D 155 N VAL D 106 SHEET 7 G 8 SER D 129 SER D 143 -1 N ARG D 138 O PHE D 150 SHEET 8 G 8 GLU D 119 SER D 126 -1 N LEU D 121 O VAL D 133 SHEET 1 H 5 GLN D 43 ASN D 45 0 SHEET 2 H 5 THR D 50 ASP D 56 -1 O THR D 52 N GLN D 43 SHEET 3 H 5 SER D 197 SER D 205 -1 O VAL D 202 N TYR D 51 SHEET 4 H 5 ASP D 74 ASN D 82 -1 N ASN D 82 O SER D 199 SHEET 5 H 5 SER D 163 THR D 167 -1 O VAL D 166 N ILE D 75 SSBOND 1 CYS A 115 CYS A 134 1555 1555 2.06 SSBOND 2 CYS B 115 CYS B 134 1555 1555 2.05 SSBOND 3 CYS C 115 CYS C 134 1555 1555 2.06 SSBOND 4 CYS D 115 CYS D 134 1555 1555 2.02 CISPEP 1 SER A 98 PRO A 99 0 -10.85 CISPEP 2 SER B 98 PRO B 99 0 -6.57 CISPEP 3 SER C 98 PRO C 99 0 -7.32 CISPEP 4 SER D 98 PRO D 99 0 -3.21 SITE 1 AC1 5 TYR A 35 TYR A 93 ARG A 138 HOH A 459 SITE 2 AC1 5 HOH A 473 SITE 1 AC2 12 SER A 126 ASP A 127 ASN A 170 HOH A 210 SITE 2 AC2 12 HOH A 227 HOH A 252 HOH A 313 HOH A 572 SITE 3 AC2 12 THR B 167 GLY B 169 ASN B 170 ASN B 173 SITE 1 AC3 8 TYR B 35 TYR B 93 ARG B 138 PRO B 142 SITE 2 AC3 8 HOH B 309 HOH B 615 HOH B 714 HOH C 496 SITE 1 AC4 5 TYR C 35 TYR C 93 PRO C 142 HOH C 546 SITE 2 AC4 5 HOH C 555 SITE 1 AC5 6 GLN D 33 TYR D 35 TYR D 93 PRO D 142 SITE 2 AC5 6 HOH D 387 HOH D 435 CRYST1 144.660 144.660 144.660 90.00 90.00 90.00 P 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006913 0.00000