data_3M4R # _entry.id 3M4R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3M4R RCSB RCSB058106 WWPDB D_1000058106 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc64076.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3M4R _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Li, H.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Structure of the N-terminal Class II Aldolase domain of a conserved protein from Thermoplasma acidophilum' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Li, H.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 46.136 _cell.length_b 46.136 _cell.length_c 203.998 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3M4R _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3M4R _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 24743.062 1 ? ? 'Aldolase II domain residues 1-219' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 142 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)QNRWAETKFDSDIDEVVYGSRLIGSDPDLVLHGGGNTSVKTTERDHAGRIISVLRVKNSGSNLGTIDSRGFT GIR(MSE)DDALAAAKIDK(MSE)TDEA(MSE)VDYLKKS(MSE)VNPSEPSPSVETFLHAFLPYKFV(MSE)HSHADAI LSITNTDLPSDQIAKILGNVVVLPYIPPGFTLAKEV(MSE)NCFKKGIDGIVLRKHGLLTFGDTGKEAYDRHINIVSRAE NFIREKTDGK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMQNRWAETKFDSDIDEVVYGSRLIGSDPDLVLHGGGNTSVKTTERDHAGRIISVLRVKNSGSNLGTIDSRGFTGIRM DDALAAAKIDKMTDEAMVDYLKKSMVNPSEPSPSVETFLHAFLPYKFVMHSHADAILSITNTDLPSDQIAKILGNVVVLP YIPPGFTLAKEVMNCFKKGIDGIVLRKHGLLTFGDTGKEAYDRHINIVSRAENFIREKTDGK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc64076.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 GLN n 1 6 ASN n 1 7 ARG n 1 8 TRP n 1 9 ALA n 1 10 GLU n 1 11 THR n 1 12 LYS n 1 13 PHE n 1 14 ASP n 1 15 SER n 1 16 ASP n 1 17 ILE n 1 18 ASP n 1 19 GLU n 1 20 VAL n 1 21 VAL n 1 22 TYR n 1 23 GLY n 1 24 SER n 1 25 ARG n 1 26 LEU n 1 27 ILE n 1 28 GLY n 1 29 SER n 1 30 ASP n 1 31 PRO n 1 32 ASP n 1 33 LEU n 1 34 VAL n 1 35 LEU n 1 36 HIS n 1 37 GLY n 1 38 GLY n 1 39 GLY n 1 40 ASN n 1 41 THR n 1 42 SER n 1 43 VAL n 1 44 LYS n 1 45 THR n 1 46 THR n 1 47 GLU n 1 48 ARG n 1 49 ASP n 1 50 HIS n 1 51 ALA n 1 52 GLY n 1 53 ARG n 1 54 ILE n 1 55 ILE n 1 56 SER n 1 57 VAL n 1 58 LEU n 1 59 ARG n 1 60 VAL n 1 61 LYS n 1 62 ASN n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 ASN n 1 67 LEU n 1 68 GLY n 1 69 THR n 1 70 ILE n 1 71 ASP n 1 72 SER n 1 73 ARG n 1 74 GLY n 1 75 PHE n 1 76 THR n 1 77 GLY n 1 78 ILE n 1 79 ARG n 1 80 MSE n 1 81 ASP n 1 82 ASP n 1 83 ALA n 1 84 LEU n 1 85 ALA n 1 86 ALA n 1 87 ALA n 1 88 LYS n 1 89 ILE n 1 90 ASP n 1 91 LYS n 1 92 MSE n 1 93 THR n 1 94 ASP n 1 95 GLU n 1 96 ALA n 1 97 MSE n 1 98 VAL n 1 99 ASP n 1 100 TYR n 1 101 LEU n 1 102 LYS n 1 103 LYS n 1 104 SER n 1 105 MSE n 1 106 VAL n 1 107 ASN n 1 108 PRO n 1 109 SER n 1 110 GLU n 1 111 PRO n 1 112 SER n 1 113 PRO n 1 114 SER n 1 115 VAL n 1 116 GLU n 1 117 THR n 1 118 PHE n 1 119 LEU n 1 120 HIS n 1 121 ALA n 1 122 PHE n 1 123 LEU n 1 124 PRO n 1 125 TYR n 1 126 LYS n 1 127 PHE n 1 128 VAL n 1 129 MSE n 1 130 HIS n 1 131 SER n 1 132 HIS n 1 133 ALA n 1 134 ASP n 1 135 ALA n 1 136 ILE n 1 137 LEU n 1 138 SER n 1 139 ILE n 1 140 THR n 1 141 ASN n 1 142 THR n 1 143 ASP n 1 144 LEU n 1 145 PRO n 1 146 SER n 1 147 ASP n 1 148 GLN n 1 149 ILE n 1 150 ALA n 1 151 LYS n 1 152 ILE n 1 153 LEU n 1 154 GLY n 1 155 ASN n 1 156 VAL n 1 157 VAL n 1 158 VAL n 1 159 LEU n 1 160 PRO n 1 161 TYR n 1 162 ILE n 1 163 PRO n 1 164 PRO n 1 165 GLY n 1 166 PHE n 1 167 THR n 1 168 LEU n 1 169 ALA n 1 170 LYS n 1 171 GLU n 1 172 VAL n 1 173 MSE n 1 174 ASN n 1 175 CYS n 1 176 PHE n 1 177 LYS n 1 178 LYS n 1 179 GLY n 1 180 ILE n 1 181 ASP n 1 182 GLY n 1 183 ILE n 1 184 VAL n 1 185 LEU n 1 186 ARG n 1 187 LYS n 1 188 HIS n 1 189 GLY n 1 190 LEU n 1 191 LEU n 1 192 THR n 1 193 PHE n 1 194 GLY n 1 195 ASP n 1 196 THR n 1 197 GLY n 1 198 LYS n 1 199 GLU n 1 200 ALA n 1 201 TYR n 1 202 ASP n 1 203 ARG n 1 204 HIS n 1 205 ILE n 1 206 ASN n 1 207 ILE n 1 208 VAL n 1 209 SER n 1 210 ARG n 1 211 ALA n 1 212 GLU n 1 213 ASN n 1 214 PHE n 1 215 ILE n 1 216 ARG n 1 217 GLU n 1 218 LYS n 1 219 THR n 1 220 ASP n 1 221 GLY n 1 222 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PRK08324, Ta0481' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DSM1728 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermoplasma acidophilum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2303 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(de3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HKW2_THEAC _struct_ref.pdbx_db_accession Q9HKW2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QNRWAETKFDSDIDEVVYGSRLIGSDPDLVLHGGGNTSVKTTERDHAGRIISVLRVKNSGSNLGTIDSRGFTGIRMDDAL AAAKIDKMTDEAMVDYLKKSMVNPSEPSPSVETFLHAFLPYKFVMHSHADAILSITNTDLPSDQIAKILGNVVVLPYIPP GFTLAKEVMNCFKKGIDGIVLRKHGLLTFGDTGKEAYDRHINIVSRAENFIREKTDGK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3M4R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 222 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HKW2 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 219 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 219 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3M4R SER A 1 ? UNP Q9HKW2 ? ? 'EXPRESSION TAG' -2 1 1 3M4R ASN A 2 ? UNP Q9HKW2 ? ? 'EXPRESSION TAG' -1 2 1 3M4R ALA A 3 ? UNP Q9HKW2 ? ? 'EXPRESSION TAG' 0 3 1 3M4R MSE A 4 ? UNP Q9HKW2 ? ? 'EXPRESSION TAG' 1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3M4R _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris Propane pH 7.0, 3.2M NaCl, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2009-06-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97970 1.0 2 0.97945 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97970, 0.97945' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.entry_id 3M4R _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 50.000 _reflns.number_obs 18049 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_netI_over_sigmaI 12.300 _reflns.pdbx_chi_squared 2.679 _reflns.pdbx_redundancy 10.600 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.number_all 18049 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 36.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.03 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.622 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.781 _reflns_shell.pdbx_redundancy 10.90 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 856 _reflns_shell.percent_possible_all 99.80 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3M4R _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 25.890 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.820 _refine.ls_number_reflns_obs 17900 _refine.ls_number_reflns_all 17900 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all 0.188 _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_R_work 0.186 _refine.ls_wR_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.233 _refine.ls_wR_factor_R_free 0.231 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 913 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.496 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.630 _refine.aniso_B[2][2] 1.630 _refine.aniso_B[3][3] -2.440 _refine.aniso_B[1][2] 0.810 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.overall_SU_R_Cruickshank_DPI 0.163 _refine.overall_SU_R_free 0.155 _refine.pdbx_overall_ESU_R 0.163 _refine.pdbx_overall_ESU_R_Free 0.155 _refine.overall_SU_ML 0.115 _refine.overall_SU_B 8.923 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.877 _refine.B_iso_max 66.66 _refine.B_iso_min 14.59 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1612 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 1756 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 25.890 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1699 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1132 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2318 1.497 1.959 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2781 0.922 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 231 5.520 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 74 32.871 24.189 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 287 15.527 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 17.882 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 269 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1928 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 338 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1085 0.826 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 443 0.228 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1760 1.403 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 614 2.263 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 548 3.393 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1185 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.R_factor_R_free 0.289 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1251 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3M4R _struct.title 'Structure of the N-terminal Class II Aldolase domain of a conserved protein from Thermoplasma acidophilum' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3M4R _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown function' _struct_keywords.text ;short chain dehydrogenase, Class II Aldolase, Adducin head domain, carbohydrate metabolism, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, OXIDOREDUCTASE, Unknown function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? SER A 29 ? SER A 12 SER A 26 1 ? 15 HELX_P HELX_P2 2 ASN A 66 ? ILE A 70 ? ASN A 63 ILE A 67 5 ? 5 HELX_P HELX_P3 3 ASP A 71 ? ARG A 73 ? ASP A 68 ARG A 70 5 ? 3 HELX_P HELX_P4 4 MSE A 80 ? ALA A 86 ? MSE A 77 ALA A 83 1 ? 7 HELX_P HELX_P5 5 ALA A 87 ? ILE A 89 ? ALA A 84 ILE A 86 5 ? 3 HELX_P HELX_P6 6 THR A 93 ? SER A 104 ? THR A 90 SER A 101 1 ? 12 HELX_P HELX_P7 7 GLU A 116 ? PHE A 122 ? GLU A 113 PHE A 119 1 ? 7 HELX_P HELX_P8 8 ALA A 133 ? ASN A 141 ? ALA A 130 ASN A 138 1 ? 9 HELX_P HELX_P9 9 PRO A 145 ? GLY A 154 ? PRO A 142 GLY A 151 1 ? 10 HELX_P HELX_P10 10 GLY A 165 ? PHE A 176 ? GLY A 162 PHE A 173 1 ? 12 HELX_P HELX_P11 11 THR A 196 ? ARG A 216 ? THR A 193 ARG A 213 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A GLN 5 N ? ? A MSE 1 A GLN 2 1_555 ? ? ? ? ? ? ? 1.335 ? covale3 covale ? ? A ARG 79 C ? ? ? 1_555 A MSE 80 N ? ? A ARG 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.338 ? covale4 covale ? ? A MSE 80 C ? ? ? 1_555 A ASP 81 N ? ? A MSE 77 A ASP 78 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A LYS 91 C ? ? ? 1_555 A MSE 92 N ? ? A LYS 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.318 ? covale6 covale ? ? A MSE 92 C ? ? ? 1_555 A THR 93 N ? ? A MSE 89 A THR 90 1_555 ? ? ? ? ? ? ? 1.317 ? covale7 covale ? ? A ALA 96 C ? ? ? 1_555 A MSE 97 N ? ? A ALA 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? A MSE 97 C ? ? ? 1_555 A VAL 98 N ? ? A MSE 94 A VAL 95 1_555 ? ? ? ? ? ? ? 1.337 ? covale9 covale ? ? A SER 104 C ? ? ? 1_555 A MSE 105 N ? ? A SER 101 A MSE 102 1_555 ? ? ? ? ? ? ? 1.327 ? covale10 covale ? ? A MSE 105 C ? ? ? 1_555 A VAL 106 N ? ? A MSE 102 A VAL 103 1_555 ? ? ? ? ? ? ? 1.322 ? covale11 covale ? ? A VAL 128 C ? ? ? 1_555 A MSE 129 N ? ? A VAL 125 A MSE 126 1_555 ? ? ? ? ? ? ? 1.330 ? covale12 covale ? ? A MSE 129 C ? ? ? 1_555 A HIS 130 N ? ? A MSE 126 A HIS 127 1_555 ? ? ? ? ? ? ? 1.320 ? covale13 covale ? ? A VAL 172 C ? ? ? 1_555 A MSE 173 N ? ? A VAL 169 A MSE 170 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale ? ? A MSE 173 C ? ? ? 1_555 A ASN 174 N ? ? A MSE 170 A ASN 171 1_555 ? ? ? ? ? ? ? 1.326 ? metalc1 metalc ? ? A HIS 188 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 185 A ZN 220 1_555 ? ? ? ? ? ? ? 1.959 ? metalc2 metalc ? ? B ZN . ZN ? ? ? 1_555 D HOH . O ? ? A ZN 220 A HOH 362 1_555 ? ? ? ? ? ? ? 2.022 ? metalc3 metalc ? ? A HIS 132 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 129 A ZN 220 1_555 ? ? ? ? ? ? ? 2.140 ? metalc4 metalc ? ? A HIS 130 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 127 A ZN 220 1_555 ? ? ? ? ? ? ? 2.202 ? metalc5 metalc ? ? A GLU 116 OE1 ? ? ? 1_555 B ZN . ZN ? ? A GLU 113 A ZN 220 1_555 ? ? ? ? ? ? ? 2.271 ? metalc6 metalc ? ? A GLU 116 OE2 ? ? ? 1_555 B ZN . ZN ? ? A GLU 113 A ZN 220 1_555 ? ? ? ? ? ? ? 2.316 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 75 ? ARG A 79 ? PHE A 72 ARG A 76 A 2 ILE A 54 ? LYS A 61 ? ILE A 51 LYS A 58 A 3 ASN A 40 ? ARG A 48 ? ASN A 37 ARG A 45 A 4 PHE A 127 ? SER A 131 ? PHE A 124 SER A 128 A 5 GLY A 189 ? GLY A 194 ? GLY A 186 GLY A 191 A 6 GLY A 182 ? LEU A 185 ? GLY A 179 LEU A 182 A 7 VAL A 156 ? LEU A 159 ? VAL A 153 LEU A 156 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 78 ? O ILE A 75 N LEU A 58 ? N LEU A 55 A 2 3 O ILE A 55 ? O ILE A 52 N GLU A 47 ? N GLU A 44 A 3 4 N ASN A 40 ? N ASN A 37 O HIS A 130 ? O HIS A 127 A 4 5 N MSE A 129 ? N MSE A 126 O THR A 192 ? O THR A 189 A 5 6 O GLY A 189 ? O GLY A 186 N LEU A 185 ? N LEU A 182 A 6 7 O VAL A 184 ? O VAL A 181 N LEU A 159 ? N LEU A 156 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 220' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 221' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 116 ? GLU A 113 . ? 1_555 ? 2 AC1 5 HIS A 130 ? HIS A 127 . ? 1_555 ? 3 AC1 5 HIS A 132 ? HIS A 129 . ? 1_555 ? 4 AC1 5 HIS A 188 ? HIS A 185 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 362 . ? 1_555 ? 6 AC2 4 LEU A 137 ? LEU A 134 . ? 5_565 ? 7 AC2 4 ASN A 141 ? ASN A 138 . ? 5_565 ? 8 AC2 4 LYS A 151 ? LYS A 148 . ? 1_555 ? 9 AC2 4 LYS A 187 ? LYS A 184 . ? 5_565 ? # _atom_sites.entry_id 3M4R _atom_sites.fract_transf_matrix[1][1] 0.021675 _atom_sites.fract_transf_matrix[1][2] 0.012514 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025028 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004902 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 GLN 5 2 2 GLN GLN A . n A 1 6 ASN 6 3 3 ASN ASN A . n A 1 7 ARG 7 4 4 ARG ARG A . n A 1 8 TRP 8 5 5 TRP TRP A . n A 1 9 ALA 9 6 6 ALA ALA A . n A 1 10 GLU 10 7 7 GLU GLU A . n A 1 11 THR 11 8 8 THR THR A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 PHE 13 10 10 PHE PHE A . n A 1 14 ASP 14 11 11 ASP ASP A . n A 1 15 SER 15 12 12 SER SER A . n A 1 16 ASP 16 13 13 ASP ASP A . n A 1 17 ILE 17 14 14 ILE ILE A . n A 1 18 ASP 18 15 15 ASP ASP A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 VAL 20 17 17 VAL VAL A . n A 1 21 VAL 21 18 18 VAL VAL A . n A 1 22 TYR 22 19 19 TYR TYR A . n A 1 23 GLY 23 20 20 GLY GLY A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 ARG 25 22 22 ARG ARG A . n A 1 26 LEU 26 23 23 LEU LEU A . n A 1 27 ILE 27 24 24 ILE ILE A . n A 1 28 GLY 28 25 25 GLY GLY A . n A 1 29 SER 29 26 26 SER SER A . n A 1 30 ASP 30 27 27 ASP ASP A . n A 1 31 PRO 31 28 28 PRO PRO A . n A 1 32 ASP 32 29 29 ASP ASP A . n A 1 33 LEU 33 30 30 LEU LEU A . n A 1 34 VAL 34 31 31 VAL VAL A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 HIS 36 33 ? ? ? A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 GLY 38 35 35 GLY GLY A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 ASN 40 37 37 ASN ASN A . n A 1 41 THR 41 38 38 THR THR A . n A 1 42 SER 42 39 39 SER SER A . n A 1 43 VAL 43 40 40 VAL VAL A . n A 1 44 LYS 44 41 41 LYS LYS A . n A 1 45 THR 45 42 42 THR THR A . n A 1 46 THR 46 43 43 THR THR A . n A 1 47 GLU 47 44 44 GLU GLU A . n A 1 48 ARG 48 45 45 ARG ARG A . n A 1 49 ASP 49 46 46 ASP ASP A . n A 1 50 HIS 50 47 47 HIS HIS A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 GLY 52 49 49 GLY GLY A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 ILE 54 51 51 ILE ILE A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 SER 56 53 53 SER SER A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 ARG 59 56 56 ARG ARG A . n A 1 60 VAL 60 57 57 VAL VAL A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 ASN 62 59 59 ASN ASN A . n A 1 63 SER 63 60 60 SER SER A . n A 1 64 GLY 64 61 61 GLY GLY A . n A 1 65 SER 65 62 62 SER SER A . n A 1 66 ASN 66 63 63 ASN ASN A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 GLY 68 65 65 GLY GLY A . n A 1 69 THR 69 66 66 THR THR A . n A 1 70 ILE 70 67 67 ILE ILE A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 ARG 73 70 70 ARG ARG A . n A 1 74 GLY 74 71 71 GLY GLY A . n A 1 75 PHE 75 72 72 PHE PHE A . n A 1 76 THR 76 73 73 THR THR A . n A 1 77 GLY 77 74 74 GLY GLY A . n A 1 78 ILE 78 75 75 ILE ILE A . n A 1 79 ARG 79 76 76 ARG ARG A . n A 1 80 MSE 80 77 77 MSE MSE A . n A 1 81 ASP 81 78 78 ASP ASP A . n A 1 82 ASP 82 79 79 ASP ASP A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 LEU 84 81 81 LEU LEU A . n A 1 85 ALA 85 82 82 ALA ALA A . n A 1 86 ALA 86 83 83 ALA ALA A . n A 1 87 ALA 87 84 84 ALA ALA A . n A 1 88 LYS 88 85 85 LYS LYS A . n A 1 89 ILE 89 86 86 ILE ILE A . n A 1 90 ASP 90 87 87 ASP ASP A . n A 1 91 LYS 91 88 88 LYS LYS A . n A 1 92 MSE 92 89 89 MSE MSE A . n A 1 93 THR 93 90 90 THR THR A . n A 1 94 ASP 94 91 91 ASP ASP A . n A 1 95 GLU 95 92 92 GLU GLU A . n A 1 96 ALA 96 93 93 ALA ALA A . n A 1 97 MSE 97 94 94 MSE MSE A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 ASP 99 96 96 ASP ASP A . n A 1 100 TYR 100 97 97 TYR TYR A . n A 1 101 LEU 101 98 98 LEU LEU A . n A 1 102 LYS 102 99 99 LYS LYS A . n A 1 103 LYS 103 100 100 LYS LYS A . n A 1 104 SER 104 101 101 SER SER A . n A 1 105 MSE 105 102 102 MSE MSE A . n A 1 106 VAL 106 103 103 VAL VAL A . n A 1 107 ASN 107 104 104 ASN ASN A . n A 1 108 PRO 108 105 105 PRO PRO A . n A 1 109 SER 109 106 106 SER SER A . n A 1 110 GLU 110 107 107 GLU GLU A . n A 1 111 PRO 111 108 108 PRO PRO A . n A 1 112 SER 112 109 109 SER SER A . n A 1 113 PRO 113 110 110 PRO PRO A . n A 1 114 SER 114 111 111 SER SER A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 GLU 116 113 113 GLU GLU A . n A 1 117 THR 117 114 114 THR THR A . n A 1 118 PHE 118 115 115 PHE PHE A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 HIS 120 117 117 HIS HIS A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 PHE 122 119 119 PHE PHE A . n A 1 123 LEU 123 120 120 LEU LEU A . n A 1 124 PRO 124 121 121 PRO PRO A . n A 1 125 TYR 125 122 122 TYR TYR A . n A 1 126 LYS 126 123 123 LYS LYS A . n A 1 127 PHE 127 124 124 PHE PHE A . n A 1 128 VAL 128 125 125 VAL VAL A . n A 1 129 MSE 129 126 126 MSE MSE A . n A 1 130 HIS 130 127 127 HIS HIS A . n A 1 131 SER 131 128 128 SER SER A . n A 1 132 HIS 132 129 129 HIS HIS A . n A 1 133 ALA 133 130 130 ALA ALA A . n A 1 134 ASP 134 131 131 ASP ASP A . n A 1 135 ALA 135 132 132 ALA ALA A . n A 1 136 ILE 136 133 133 ILE ILE A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 SER 138 135 135 SER SER A . n A 1 139 ILE 139 136 136 ILE ILE A . n A 1 140 THR 140 137 137 THR THR A . n A 1 141 ASN 141 138 138 ASN ASN A . n A 1 142 THR 142 139 139 THR THR A . n A 1 143 ASP 143 140 140 ASP ASP A . n A 1 144 LEU 144 141 141 LEU LEU A . n A 1 145 PRO 145 142 142 PRO PRO A . n A 1 146 SER 146 143 143 SER SER A . n A 1 147 ASP 147 144 144 ASP ASP A . n A 1 148 GLN 148 145 145 GLN GLN A . n A 1 149 ILE 149 146 146 ILE ILE A . n A 1 150 ALA 150 147 147 ALA ALA A . n A 1 151 LYS 151 148 148 LYS LYS A . n A 1 152 ILE 152 149 149 ILE ILE A . n A 1 153 LEU 153 150 150 LEU LEU A . n A 1 154 GLY 154 151 151 GLY GLY A . n A 1 155 ASN 155 152 152 ASN ASN A . n A 1 156 VAL 156 153 153 VAL VAL A . n A 1 157 VAL 157 154 154 VAL VAL A . n A 1 158 VAL 158 155 155 VAL VAL A . n A 1 159 LEU 159 156 156 LEU LEU A . n A 1 160 PRO 160 157 157 PRO PRO A . n A 1 161 TYR 161 158 158 TYR TYR A . n A 1 162 ILE 162 159 159 ILE ILE A . n A 1 163 PRO 163 160 160 PRO PRO A . n A 1 164 PRO 164 161 161 PRO PRO A . n A 1 165 GLY 165 162 162 GLY GLY A . n A 1 166 PHE 166 163 163 PHE PHE A . n A 1 167 THR 167 164 164 THR THR A . n A 1 168 LEU 168 165 165 LEU LEU A . n A 1 169 ALA 169 166 166 ALA ALA A . n A 1 170 LYS 170 167 167 LYS LYS A . n A 1 171 GLU 171 168 168 GLU GLU A . n A 1 172 VAL 172 169 169 VAL VAL A . n A 1 173 MSE 173 170 170 MSE MSE A . n A 1 174 ASN 174 171 171 ASN ASN A . n A 1 175 CYS 175 172 172 CYS CYS A . n A 1 176 PHE 176 173 173 PHE PHE A . n A 1 177 LYS 177 174 174 LYS LYS A . n A 1 178 LYS 178 175 175 LYS LYS A . n A 1 179 GLY 179 176 176 GLY GLY A . n A 1 180 ILE 180 177 177 ILE ILE A . n A 1 181 ASP 181 178 178 ASP ASP A . n A 1 182 GLY 182 179 179 GLY GLY A . n A 1 183 ILE 183 180 180 ILE ILE A . n A 1 184 VAL 184 181 181 VAL VAL A . n A 1 185 LEU 185 182 182 LEU LEU A . n A 1 186 ARG 186 183 183 ARG ARG A . n A 1 187 LYS 187 184 184 LYS LYS A . n A 1 188 HIS 188 185 185 HIS HIS A . n A 1 189 GLY 189 186 186 GLY GLY A . n A 1 190 LEU 190 187 187 LEU LEU A . n A 1 191 LEU 191 188 188 LEU LEU A . n A 1 192 THR 192 189 189 THR THR A . n A 1 193 PHE 193 190 190 PHE PHE A . n A 1 194 GLY 194 191 191 GLY GLY A . n A 1 195 ASP 195 192 192 ASP ASP A . n A 1 196 THR 196 193 193 THR THR A . n A 1 197 GLY 197 194 194 GLY GLY A . n A 1 198 LYS 198 195 195 LYS LYS A . n A 1 199 GLU 199 196 196 GLU GLU A . n A 1 200 ALA 200 197 197 ALA ALA A . n A 1 201 TYR 201 198 198 TYR TYR A . n A 1 202 ASP 202 199 199 ASP ASP A . n A 1 203 ARG 203 200 200 ARG ARG A . n A 1 204 HIS 204 201 201 HIS HIS A . n A 1 205 ILE 205 202 202 ILE ILE A . n A 1 206 ASN 206 203 203 ASN ASN A . n A 1 207 ILE 207 204 204 ILE ILE A . n A 1 208 VAL 208 205 205 VAL VAL A . n A 1 209 SER 209 206 206 SER SER A . n A 1 210 ARG 210 207 207 ARG ARG A . n A 1 211 ALA 211 208 208 ALA ALA A . n A 1 212 GLU 212 209 209 GLU GLU A . n A 1 213 ASN 213 210 210 ASN ASN A . n A 1 214 PHE 214 211 211 PHE PHE A . n A 1 215 ILE 215 212 212 ILE ILE A . n A 1 216 ARG 216 213 213 ARG ARG A . n A 1 217 GLU 217 214 ? ? ? A . n A 1 218 LYS 218 215 ? ? ? A . n A 1 219 THR 219 216 ? ? ? A . n A 1 220 ASP 220 217 ? ? ? A . n A 1 221 GLY 221 218 ? ? ? A . n A 1 222 LYS 222 219 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 220 1 ZN ZN A . C 3 CL 1 221 1 CL CL A . D 4 HOH 1 222 1 HOH HOH A . D 4 HOH 2 223 2 HOH HOH A . D 4 HOH 3 224 3 HOH HOH A . D 4 HOH 4 225 4 HOH HOH A . D 4 HOH 5 226 5 HOH HOH A . D 4 HOH 6 227 6 HOH HOH A . D 4 HOH 7 228 7 HOH HOH A . D 4 HOH 8 229 8 HOH HOH A . D 4 HOH 9 230 9 HOH HOH A . D 4 HOH 10 231 10 HOH HOH A . D 4 HOH 11 232 11 HOH HOH A . D 4 HOH 12 233 12 HOH HOH A . D 4 HOH 13 234 13 HOH HOH A . D 4 HOH 14 235 14 HOH HOH A . D 4 HOH 15 236 15 HOH HOH A . D 4 HOH 16 237 16 HOH HOH A . D 4 HOH 17 238 17 HOH HOH A . D 4 HOH 18 239 18 HOH HOH A . D 4 HOH 19 240 19 HOH HOH A . D 4 HOH 20 241 20 HOH HOH A . D 4 HOH 21 242 21 HOH HOH A . D 4 HOH 22 243 22 HOH HOH A . D 4 HOH 23 244 23 HOH HOH A . D 4 HOH 24 245 24 HOH HOH A . D 4 HOH 25 246 25 HOH HOH A . D 4 HOH 26 247 26 HOH HOH A . D 4 HOH 27 248 27 HOH HOH A . D 4 HOH 28 249 28 HOH HOH A . D 4 HOH 29 250 29 HOH HOH A . D 4 HOH 30 251 30 HOH HOH A . D 4 HOH 31 252 31 HOH HOH A . D 4 HOH 32 253 32 HOH HOH A . D 4 HOH 33 254 33 HOH HOH A . D 4 HOH 34 255 34 HOH HOH A . D 4 HOH 35 256 35 HOH HOH A . D 4 HOH 36 257 36 HOH HOH A . D 4 HOH 37 258 37 HOH HOH A . D 4 HOH 38 259 38 HOH HOH A . D 4 HOH 39 260 39 HOH HOH A . D 4 HOH 40 261 40 HOH HOH A . D 4 HOH 41 262 41 HOH HOH A . D 4 HOH 42 263 42 HOH HOH A . D 4 HOH 43 264 43 HOH HOH A . D 4 HOH 44 265 44 HOH HOH A . D 4 HOH 45 266 45 HOH HOH A . D 4 HOH 46 267 46 HOH HOH A . D 4 HOH 47 268 47 HOH HOH A . D 4 HOH 48 269 48 HOH HOH A . D 4 HOH 49 270 49 HOH HOH A . D 4 HOH 50 271 50 HOH HOH A . D 4 HOH 51 272 51 HOH HOH A . D 4 HOH 52 273 52 HOH HOH A . D 4 HOH 53 274 53 HOH HOH A . D 4 HOH 54 275 54 HOH HOH A . D 4 HOH 55 276 55 HOH HOH A . D 4 HOH 56 277 56 HOH HOH A . D 4 HOH 57 278 57 HOH HOH A . D 4 HOH 58 279 58 HOH HOH A . D 4 HOH 59 280 59 HOH HOH A . D 4 HOH 60 281 60 HOH HOH A . D 4 HOH 61 282 61 HOH HOH A . D 4 HOH 62 283 62 HOH HOH A . D 4 HOH 63 284 63 HOH HOH A . D 4 HOH 64 285 64 HOH HOH A . D 4 HOH 65 286 65 HOH HOH A . D 4 HOH 66 287 66 HOH HOH A . D 4 HOH 67 288 67 HOH HOH A . D 4 HOH 68 289 68 HOH HOH A . D 4 HOH 69 290 69 HOH HOH A . D 4 HOH 70 291 70 HOH HOH A . D 4 HOH 71 292 71 HOH HOH A . D 4 HOH 72 293 72 HOH HOH A . D 4 HOH 73 294 73 HOH HOH A . D 4 HOH 74 295 74 HOH HOH A . D 4 HOH 75 296 75 HOH HOH A . D 4 HOH 76 297 76 HOH HOH A . D 4 HOH 77 298 77 HOH HOH A . D 4 HOH 78 299 78 HOH HOH A . D 4 HOH 79 300 79 HOH HOH A . D 4 HOH 80 301 80 HOH HOH A . D 4 HOH 81 302 81 HOH HOH A . D 4 HOH 82 303 82 HOH HOH A . D 4 HOH 83 304 83 HOH HOH A . D 4 HOH 84 305 84 HOH HOH A . D 4 HOH 85 306 85 HOH HOH A . D 4 HOH 86 307 86 HOH HOH A . D 4 HOH 87 308 87 HOH HOH A . D 4 HOH 88 309 88 HOH HOH A . D 4 HOH 89 310 89 HOH HOH A . D 4 HOH 90 311 90 HOH HOH A . D 4 HOH 91 312 91 HOH HOH A . D 4 HOH 92 313 92 HOH HOH A . D 4 HOH 93 314 93 HOH HOH A . D 4 HOH 94 315 94 HOH HOH A . D 4 HOH 95 316 95 HOH HOH A . D 4 HOH 96 317 96 HOH HOH A . D 4 HOH 97 318 97 HOH HOH A . D 4 HOH 98 319 98 HOH HOH A . D 4 HOH 99 320 99 HOH HOH A . D 4 HOH 100 321 100 HOH HOH A . D 4 HOH 101 322 101 HOH HOH A . D 4 HOH 102 323 102 HOH HOH A . D 4 HOH 103 324 103 HOH HOH A . D 4 HOH 104 325 104 HOH HOH A . D 4 HOH 105 326 105 HOH HOH A . D 4 HOH 106 327 106 HOH HOH A . D 4 HOH 107 328 107 HOH HOH A . D 4 HOH 108 329 108 HOH HOH A . D 4 HOH 109 330 109 HOH HOH A . D 4 HOH 110 331 110 HOH HOH A . D 4 HOH 111 332 111 HOH HOH A . D 4 HOH 112 333 112 HOH HOH A . D 4 HOH 113 334 113 HOH HOH A . D 4 HOH 114 335 114 HOH HOH A . D 4 HOH 115 336 115 HOH HOH A . D 4 HOH 116 337 116 HOH HOH A . D 4 HOH 117 338 117 HOH HOH A . D 4 HOH 118 339 118 HOH HOH A . D 4 HOH 119 340 119 HOH HOH A . D 4 HOH 120 341 120 HOH HOH A . D 4 HOH 121 342 121 HOH HOH A . D 4 HOH 122 343 122 HOH HOH A . D 4 HOH 123 344 123 HOH HOH A . D 4 HOH 124 345 124 HOH HOH A . D 4 HOH 125 346 125 HOH HOH A . D 4 HOH 126 347 126 HOH HOH A . D 4 HOH 127 348 127 HOH HOH A . D 4 HOH 128 349 128 HOH HOH A . D 4 HOH 129 350 129 HOH HOH A . D 4 HOH 130 351 130 HOH HOH A . D 4 HOH 131 352 131 HOH HOH A . D 4 HOH 132 353 132 HOH HOH A . D 4 HOH 133 354 133 HOH HOH A . D 4 HOH 134 355 134 HOH HOH A . D 4 HOH 135 356 135 HOH HOH A . D 4 HOH 136 357 136 HOH HOH A . D 4 HOH 137 358 137 HOH HOH A . D 4 HOH 138 359 138 HOH HOH A . D 4 HOH 139 360 139 HOH HOH A . D 4 HOH 140 361 140 HOH HOH A . D 4 HOH 141 362 141 HOH HOH A . D 4 HOH 142 363 142 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 80 A MSE 77 ? MET SELENOMETHIONINE 3 A MSE 92 A MSE 89 ? MET SELENOMETHIONINE 4 A MSE 97 A MSE 94 ? MET SELENOMETHIONINE 5 A MSE 105 A MSE 102 ? MET SELENOMETHIONINE 6 A MSE 129 A MSE 126 ? MET SELENOMETHIONINE 7 A MSE 173 A MSE 170 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 188 ? A HIS 185 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 O ? D HOH . ? A HOH 362 ? 1_555 83.6 ? 2 NE2 ? A HIS 188 ? A HIS 185 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 NE2 ? A HIS 132 ? A HIS 129 ? 1_555 100.6 ? 3 O ? D HOH . ? A HOH 362 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 NE2 ? A HIS 132 ? A HIS 129 ? 1_555 84.7 ? 4 NE2 ? A HIS 188 ? A HIS 185 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 NE2 ? A HIS 130 ? A HIS 127 ? 1_555 94.4 ? 5 O ? D HOH . ? A HOH 362 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 NE2 ? A HIS 130 ? A HIS 127 ? 1_555 176.3 ? 6 NE2 ? A HIS 132 ? A HIS 129 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 NE2 ? A HIS 130 ? A HIS 127 ? 1_555 98.7 ? 7 NE2 ? A HIS 188 ? A HIS 185 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE1 ? A GLU 116 ? A GLU 113 ? 1_555 151.3 ? 8 O ? D HOH . ? A HOH 362 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE1 ? A GLU 116 ? A GLU 113 ? 1_555 85.4 ? 9 NE2 ? A HIS 132 ? A HIS 129 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE1 ? A GLU 116 ? A GLU 113 ? 1_555 104.7 ? 10 NE2 ? A HIS 130 ? A HIS 127 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE1 ? A GLU 116 ? A GLU 113 ? 1_555 95.0 ? 11 NE2 ? A HIS 188 ? A HIS 185 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE2 ? A GLU 116 ? A GLU 113 ? 1_555 92.9 ? 12 O ? D HOH . ? A HOH 362 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE2 ? A GLU 116 ? A GLU 113 ? 1_555 80.1 ? 13 NE2 ? A HIS 132 ? A HIS 129 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE2 ? A GLU 116 ? A GLU 113 ? 1_555 158.5 ? 14 NE2 ? A HIS 130 ? A HIS 127 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE2 ? A GLU 116 ? A GLU 113 ? 1_555 96.9 ? 15 OE1 ? A GLU 116 ? A GLU 113 ? 1_555 ZN ? B ZN . ? A ZN 220 ? 1_555 OE2 ? A GLU 116 ? A GLU 113 ? 1_555 59.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.000 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 18049 _diffrn_reflns.pdbx_Rmerge_I_obs 0.074 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.68 _diffrn_reflns.av_sigmaI_over_netI 55.71 _diffrn_reflns.pdbx_redundancy 10.60 _diffrn_reflns.pdbx_percent_possible_obs 99.70 _diffrn_reflns.number 190518 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.43 50.00 ? ? 0.072 ? 14.190 8.90 96.50 1 4.31 5.43 ? ? 0.058 ? 7.236 10.10 99.30 1 3.76 4.31 ? ? 0.056 ? 5.125 10.30 99.90 1 3.42 3.76 ? ? 0.059 ? 4.303 10.50 100.00 1 3.17 3.42 ? ? 0.069 ? 3.778 10.50 100.00 1 2.99 3.17 ? ? 0.077 ? 2.915 10.50 100.00 1 2.84 2.99 ? ? 0.089 ? 2.268 10.70 100.00 1 2.71 2.84 ? ? 0.098 ? 1.993 10.70 100.00 1 2.61 2.71 ? ? 0.126 ? 1.618 10.70 100.00 1 2.52 2.61 ? ? 0.139 ? 1.499 10.80 100.00 1 2.44 2.52 ? ? 0.146 ? 1.188 10.60 100.00 1 2.37 2.44 ? ? 0.166 ? 1.072 10.90 99.90 1 2.31 2.37 ? ? 0.184 ? 1.050 10.60 100.00 1 2.25 2.31 ? ? 0.230 ? 0.960 10.90 100.00 1 2.20 2.25 ? ? 0.252 ? 0.916 10.70 100.00 1 2.15 2.20 ? ? 0.307 ? 0.900 10.90 100.00 1 2.11 2.15 ? ? 0.338 ? 0.876 10.80 99.90 1 2.07 2.11 ? ? 0.418 ? 0.807 10.80 99.80 1 2.03 2.07 ? ? 0.523 ? 0.802 10.80 99.80 1 2.00 2.03 ? ? 0.622 ? 0.781 10.90 99.80 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -9.0000 _pdbx_refine_tls.origin_y 18.2991 _pdbx_refine_tls.origin_z 15.1226 _pdbx_refine_tls.T[1][1] 0.0975 _pdbx_refine_tls.T[2][2] 0.1700 _pdbx_refine_tls.T[3][3] 0.1845 _pdbx_refine_tls.T[1][2] 0.0373 _pdbx_refine_tls.T[1][3] 0.0651 _pdbx_refine_tls.T[2][3] -0.0632 _pdbx_refine_tls.L[1][1] 2.9699 _pdbx_refine_tls.L[2][2] 2.2515 _pdbx_refine_tls.L[3][3] 5.3349 _pdbx_refine_tls.L[1][2] -0.7486 _pdbx_refine_tls.L[1][3] -1.7352 _pdbx_refine_tls.L[2][3] 1.8486 _pdbx_refine_tls.S[1][1] 0.0041 _pdbx_refine_tls.S[2][2] -0.1755 _pdbx_refine_tls.S[3][3] 0.1713 _pdbx_refine_tls.S[1][2] -0.1185 _pdbx_refine_tls.S[1][3] 0.0860 _pdbx_refine_tls.S[2][3] 0.2268 _pdbx_refine_tls.S[2][1] 0.3052 _pdbx_refine_tls.S[3][1] -0.0204 _pdbx_refine_tls.S[3][2] -0.2579 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 213 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MAD_set.id 1 _pdbx_phasing_MAD_set.d_res_high 2.00 _pdbx_phasing_MAD_set.d_res_low 50.00 _pdbx_phasing_MAD_set.reflns_acentric 14809 _pdbx_phasing_MAD_set.loc_acentric 0.100 _pdbx_phasing_MAD_set.power_acentric 0.000 _pdbx_phasing_MAD_set.R_cullis_acentric 1.630 _pdbx_phasing_MAD_set.reflns_centric 3078 _pdbx_phasing_MAD_set.loc_centric 0.100 _pdbx_phasing_MAD_set.power_centric 0.000 _pdbx_phasing_MAD_set.R_cullis_centric 1.000 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 12.50 50.00 32 0.400 0.000 0.920 54 0.400 0.000 1.000 1 7.14 12.50 215 0.600 0.000 1.150 152 0.500 0.000 1.000 1 5.00 7.14 565 0.500 0.000 1.690 242 0.300 0.000 1.000 1 3.85 5.00 1065 0.300 0.000 1.180 355 0.300 0.000 1.000 1 3.12 3.85 1789 0.200 0.000 1.350 430 0.200 0.000 1.000 1 2.63 3.12 2646 0.100 0.000 2.060 532 0.100 0.000 1.000 1 2.27 2.63 3649 0.100 0.000 2.760 618 0.000 0.000 1.000 1 2.00 2.27 4848 0.000 0.000 3.540 695 0.000 0.000 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se -0.775 -0.029 -0.043 51.4529 0.000 6.748 2 Se -0.640 0.258 -0.083 66.7532 0.000 4.915 3 Se -0.447 -0.062 -0.067 64.6081 0.000 5.809 4 Se -0.582 0.305 -0.018 54.3163 0.000 4.262 5 Se -0.877 -0.045 -0.090 61.0289 0.000 4.785 6 Se -0.772 0.239 -0.076 86.3637 0.000 6.437 7 Se -0.453 0.195 -0.100 55.8065 0.000 1.713 8 Se -0.253 -0.025 -0.104 77.9969 0.000 2.254 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 12.50 50.00 86 0.264 54 0.000 32 0.708 7.14 12.50 367 0.360 152 0.000 215 0.614 5.00 7.14 807 0.434 242 0.000 565 0.620 3.85 5.00 1420 0.447 355 0.000 1065 0.595 3.12 3.85 2219 0.448 430 0.000 1789 0.555 2.63 3.12 3178 0.400 532 0.000 2646 0.481 2.27 2.63 4267 0.252 618 0.000 3649 0.294 2.00 2.27 5543 0.127 695 0.000 4848 0.145 # _pdbx_phasing_dm.entry_id 3M4R _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 17887 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 6.900 100.000 68.300 ? ? ? 0.820 ? ? 504 5.440 6.900 59.700 ? ? ? 0.868 ? ? 502 4.700 5.440 63.200 ? ? ? 0.907 ? ? 504 4.250 4.700 57.100 ? ? ? 0.910 ? ? 502 3.940 4.250 62.700 ? ? ? 0.921 ? ? 508 3.690 3.940 58.600 ? ? ? 0.915 ? ? 521 3.490 3.690 61.500 ? ? ? 0.924 ? ? 521 3.320 3.490 64.200 ? ? ? 0.894 ? ? 536 3.180 3.320 63.000 ? ? ? 0.906 ? ? 585 3.050 3.180 58.300 ? ? ? 0.889 ? ? 577 2.930 3.050 61.100 ? ? ? 0.873 ? ? 623 2.830 2.930 59.900 ? ? ? 0.875 ? ? 624 2.740 2.830 65.800 ? ? ? 0.870 ? ? 656 2.660 2.740 60.200 ? ? ? 0.868 ? ? 687 2.580 2.660 66.200 ? ? ? 0.862 ? ? 665 2.510 2.580 64.400 ? ? ? 0.856 ? ? 730 2.450 2.510 67.600 ? ? ? 0.858 ? ? 714 2.390 2.450 69.500 ? ? ? 0.883 ? ? 763 2.330 2.390 66.900 ? ? ? 0.880 ? ? 759 2.280 2.330 70.600 ? ? ? 0.857 ? ? 779 2.230 2.280 70.800 ? ? ? 0.902 ? ? 795 2.180 2.230 75.800 ? ? ? 0.903 ? ? 802 2.140 2.180 76.800 ? ? ? 0.892 ? ? 844 2.100 2.140 78.100 ? ? ? 0.891 ? ? 817 2.060 2.100 82.400 ? ? ? 0.883 ? ? 908 2.000 2.060 80.000 ? ? ? 0.794 ? ? 1461 # _phasing.method MAD # _phasing_MAD.entry_id 3M4R _phasing_MAD.pdbx_d_res_high 2.00 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 17887 _phasing_MAD.pdbx_fom 0.290 _phasing_MAD.pdbx_reflns_centric 3078 _phasing_MAD.pdbx_fom_centric 0.000 _phasing_MAD.pdbx_reflns_acentric 14809 _phasing_MAD.pdbx_fom_acentric 0.350 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MLPHARE . ? other 'Eleanor J. Dodson' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/mlphare.html Fortran_77 ? 4 DM 6.0 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 5 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 8 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 10 HKL-3000 . ? ? ? ? phasing ? ? ? 11 SHELXD . ? ? ? ? phasing ? ? ? 12 SHELXE . ? ? ? ? 'model building' ? ? ? 13 SOLVE . ? ? ? ? phasing ? ? ? 14 RESOLVE . ? ? ? ? phasing ? ? ? 15 ARP/wARP . ? ? ? ? 'model building' ? ? ? 16 CCP4 . ? ? ? ? phasing ? ? ? 17 O . ? ? ? ? 'model building' ? ? ? 18 Coot . ? ? ? ? 'model building' ? ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 50 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 50 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 50 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.24 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.06 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 8 ? ? -133.47 -33.72 2 1 PRO A 121 ? ? -90.60 57.44 3 1 HIS A 129 ? ? -109.57 49.64 4 1 HIS A 185 ? ? -139.19 -66.80 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 9 ? CG ? A LYS 12 CG 2 1 Y 1 A LYS 9 ? CD ? A LYS 12 CD 3 1 Y 1 A LYS 9 ? CE ? A LYS 12 CE 4 1 Y 1 A LYS 9 ? NZ ? A LYS 12 NZ 5 1 Y 1 A LEU 32 ? CG ? A LEU 35 CG 6 1 Y 1 A LEU 32 ? CD1 ? A LEU 35 CD1 7 1 Y 1 A LEU 32 ? CD2 ? A LEU 35 CD2 8 1 Y 1 A ARG 45 ? CG ? A ARG 48 CG 9 1 Y 1 A ARG 45 ? CD ? A ARG 48 CD 10 1 Y 1 A ARG 45 ? NE ? A ARG 48 NE 11 1 Y 1 A ARG 45 ? CZ ? A ARG 48 CZ 12 1 Y 1 A ARG 45 ? NH1 ? A ARG 48 NH1 13 1 Y 1 A ARG 45 ? NH2 ? A ARG 48 NH2 14 1 Y 1 A LYS 88 ? CG ? A LYS 91 CG 15 1 Y 1 A LYS 88 ? CD ? A LYS 91 CD 16 1 Y 1 A LYS 88 ? CE ? A LYS 91 CE 17 1 Y 1 A LYS 88 ? NZ ? A LYS 91 NZ 18 1 Y 1 A LYS 174 ? CD ? A LYS 177 CD 19 1 Y 1 A LYS 174 ? CE ? A LYS 177 CE 20 1 Y 1 A LYS 174 ? NZ ? A LYS 177 NZ 21 1 Y 1 A LYS 175 ? CG ? A LYS 178 CG 22 1 Y 1 A LYS 175 ? CD ? A LYS 178 CD 23 1 Y 1 A LYS 175 ? CE ? A LYS 178 CE 24 1 Y 1 A LYS 175 ? NZ ? A LYS 178 NZ 25 1 Y 1 A ARG 213 ? CG ? A ARG 216 CG 26 1 Y 1 A ARG 213 ? CD ? A ARG 216 CD 27 1 Y 1 A ARG 213 ? NE ? A ARG 216 NE 28 1 Y 1 A ARG 213 ? CZ ? A ARG 216 CZ 29 1 Y 1 A ARG 213 ? NH1 ? A ARG 216 NH1 30 1 Y 1 A ARG 213 ? NH2 ? A ARG 216 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A HIS 33 ? A HIS 36 4 1 Y 1 A GLU 214 ? A GLU 217 5 1 Y 1 A LYS 215 ? A LYS 218 6 1 Y 1 A THR 216 ? A THR 219 7 1 Y 1 A ASP 217 ? A ASP 220 8 1 Y 1 A GLY 218 ? A GLY 221 9 1 Y 1 A LYS 219 ? A LYS 222 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'CHLORIDE ION' CL 4 water HOH #