HEADER OXIDOREDUCTASE 12-MAR-10 3M4V TITLE CRYSTAL STRUCTURE OF THE A330P MUTANT OF CYTOCHROME P450 BM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL P-450/NADPH-P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEME DOMAIN, RESIDUES 1-482; COMPND 5 SYNONYM: CYTOCHROME P450(BM-3), CYTOCHROME P450BM-3, CYTOCHROME P450 COMPND 6 102; COMPND 7 EC: 1.14.14.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: P450BM-3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS CYTOCHROME P450 FOLD, ELECTRON TRANSPORT, FAD, FLAVOPROTEIN, FMN, KEYWDS 2 HEME, IRON, METAL-BINDING, MONOOXYGENASE, MULTIFUNCTIONAL ENZYME, KEYWDS 3 NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YANG,C.J.C.WHITEHOUSE,S.G.BELL,M.BARTLAM,L.L.WONG,Z.RAO REVDAT 3 01-NOV-23 3M4V 1 REMARK SEQADV LINK REVDAT 2 18-DEC-13 3M4V 1 JRNL VERSN REVDAT 1 23-MAR-11 3M4V 0 JRNL AUTH C.J.C.WHITEHOUSE,W.YANG,J.A.YORKE,B.C.ROWLATT,A.J.STRONG, JRNL AUTH 2 C.F.BLANFORD,S.G.BELL,M.BARTLAM,L.L.WONG,Z.RAO JRNL TITL STRUCTURAL BASIS FOR THE PROPERTIES OF TWO SINGLE-SITE JRNL TITL 2 PROLINE MUTANTS OF CYP102A1 (P450BM3) JRNL REF CHEMBIOCHEM V. 11 2549 2010 JRNL REFN ISSN 1439-4227 JRNL PMID 21110374 JRNL DOI 10.1002/CBIC.201000421 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 79109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5655 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 310 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 932 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7443 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10092 ; 1.222 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 886 ; 6.771 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 359 ;36.388 ;24.791 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1327 ;13.742 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.892 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1075 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5677 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3789 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5123 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 835 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 87 ; 0.133 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4602 ; 0.616 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7195 ; 1.007 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3218 ; 1.497 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2893 ; 2.346 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83306 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.18500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.2M MAGNESIUM CHLORIDE, REMARK 280 24% PEG 3350, PH 8.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 74.14050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 ILE A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 456 REMARK 465 GLY A 457 REMARK 465 ILE A 458 REMARK 465 PRO A 459 REMARK 465 SER A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 THR A 463 REMARK 465 GLU A 464 REMARK 465 GLN A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 LYS A 469 REMARK 465 VAL A 470 REMARK 465 ARG A 471 REMARK 465 LYS A 472 REMARK 465 LYS A 473 REMARK 465 ALA A 474 REMARK 465 GLU A 475 REMARK 465 ASN A 476 REMARK 465 ALA A 477 REMARK 465 HIS A 478 REMARK 465 ASN A 479 REMARK 465 THR A 480 REMARK 465 PRO A 481 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 ILE B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 GLN B 189 REMARK 465 ARG B 190 REMARK 465 ALA B 191 REMARK 465 ASN B 192 REMARK 465 PRO B 193 REMARK 465 ASP B 194 REMARK 465 ASP B 195 REMARK 465 PRO B 196 REMARK 465 ALA B 197 REMARK 465 TYR B 198 REMARK 465 ASP B 199 REMARK 465 GLU B 200 REMARK 465 ASN B 201 REMARK 465 GLY B 456 REMARK 465 GLY B 457 REMARK 465 ILE B 458 REMARK 465 PRO B 459 REMARK 465 SER B 460 REMARK 465 PRO B 461 REMARK 465 SER B 462 REMARK 465 THR B 463 REMARK 465 GLU B 464 REMARK 465 GLN B 465 REMARK 465 SER B 466 REMARK 465 ALA B 467 REMARK 465 LYS B 468 REMARK 465 LYS B 469 REMARK 465 VAL B 470 REMARK 465 ARG B 471 REMARK 465 LYS B 472 REMARK 465 LYS B 473 REMARK 465 ALA B 474 REMARK 465 GLU B 475 REMARK 465 ASN B 476 REMARK 465 ALA B 477 REMARK 465 HIS B 478 REMARK 465 ASN B 479 REMARK 465 THR B 480 REMARK 465 PRO B 481 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 382 N ALA A 384 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 382 C - N - CA ANGL. DEV. = 24.1 DEGREES REMARK 500 PRO B 382 C - N - CD ANGL. DEV. = -34.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 -179.60 -68.58 REMARK 500 LYS A 15 -124.58 50.93 REMARK 500 ASP A 84 39.94 -95.57 REMARK 500 ASP A 136 44.34 -100.17 REMARK 500 PHE A 158 26.13 -146.94 REMARK 500 ASP A 363 94.78 -61.92 REMARK 500 ASP A 370 33.68 -92.76 REMARK 500 ASN A 381 -76.04 -158.61 REMARK 500 PRO A 382 -143.49 -107.43 REMARK 500 SER A 383 3.24 36.35 REMARK 500 THR A 436 -111.52 -122.18 REMARK 500 LYS B 15 -123.74 53.08 REMARK 500 ASP B 84 40.21 -97.52 REMARK 500 ASP B 136 -1.95 63.02 REMARK 500 PHE B 158 27.46 -147.82 REMARK 500 ASP B 370 30.02 -84.97 REMARK 500 ASN B 381 121.28 73.48 REMARK 500 PRO B 382 -15.73 -151.89 REMARK 500 THR B 436 -117.97 -116.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 381 PRO A 382 -41.77 REMARK 500 ASN B 381 PRO B 382 -113.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 482 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 482 NA 98.9 REMARK 620 3 HEM A 482 NB 91.3 88.4 REMARK 620 4 HEM A 482 NC 91.1 170.0 90.9 REMARK 620 5 HEM A 482 ND 99.2 89.3 169.4 89.6 REMARK 620 6 HOH A 562 O 165.6 72.6 77.0 97.4 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 482 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 482 NA 99.5 REMARK 620 3 HEM B 482 NB 88.7 90.1 REMARK 620 4 HEM B 482 NC 90.2 170.3 88.7 REMARK 620 5 HEM B 482 ND 100.6 88.7 170.8 90.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 482 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HF2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE I401P MUTANT OF CYTOCHROME P450 BM3 DBREF 3M4V A 0 481 UNP P14779 CPXB_BACME 1 482 DBREF 3M4V B 0 481 UNP P14779 CPXB_BACME 1 482 SEQADV 3M4V PRO A 330 UNP P14779 ALA 331 ENGINEERED MUTATION SEQADV 3M4V PRO B 330 UNP P14779 ALA 331 ENGINEERED MUTATION SEQRES 1 A 482 MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY SEQRES 2 A 482 GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO SEQRES 3 A 482 VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU SEQRES 4 A 482 ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR SEQRES 5 A 482 LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SEQRES 6 A 482 SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE SEQRES 7 A 482 VAL ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP SEQRES 8 A 482 THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU SEQRES 9 A 482 LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS SEQRES 10 A 482 ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS SEQRES 11 A 482 TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO SEQRES 12 A 482 GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU SEQRES 13 A 482 CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP SEQRES 14 A 482 GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU SEQRES 15 A 482 ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP SEQRES 16 A 482 ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU SEQRES 17 A 482 ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE SEQRES 18 A 482 ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU SEQRES 19 A 482 LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY SEQRES 20 A 482 GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE SEQRES 21 A 482 THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU SEQRES 22 A 482 LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS SEQRES 23 A 482 VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU SEQRES 24 A 482 VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU SEQRES 25 A 482 LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU SEQRES 26 A 482 TRP PRO THR ALA PRO PRO PHE SER LEU TYR ALA LYS GLU SEQRES 27 A 482 ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY SEQRES 28 A 482 ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP SEQRES 29 A 482 LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO SEQRES 30 A 482 GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA SEQRES 31 A 482 PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY SEQRES 32 A 482 GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY SEQRES 33 A 482 MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN SEQRES 34 A 482 TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO SEQRES 35 A 482 GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO SEQRES 36 A 482 LEU GLY GLY ILE PRO SER PRO SER THR GLU GLN SER ALA SEQRES 37 A 482 LYS LYS VAL ARG LYS LYS ALA GLU ASN ALA HIS ASN THR SEQRES 38 A 482 PRO SEQRES 1 B 482 MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY SEQRES 2 B 482 GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO SEQRES 3 B 482 VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU SEQRES 4 B 482 ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR SEQRES 5 B 482 LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SEQRES 6 B 482 SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE SEQRES 7 B 482 VAL ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP SEQRES 8 B 482 THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU SEQRES 9 B 482 LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS SEQRES 10 B 482 ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS SEQRES 11 B 482 TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO SEQRES 12 B 482 GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU SEQRES 13 B 482 CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP SEQRES 14 B 482 GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU SEQRES 15 B 482 ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP SEQRES 16 B 482 ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU SEQRES 17 B 482 ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE SEQRES 18 B 482 ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU SEQRES 19 B 482 LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY SEQRES 20 B 482 GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE SEQRES 21 B 482 THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU SEQRES 22 B 482 LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS SEQRES 23 B 482 VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU SEQRES 24 B 482 VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU SEQRES 25 B 482 LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU SEQRES 26 B 482 TRP PRO THR ALA PRO PRO PHE SER LEU TYR ALA LYS GLU SEQRES 27 B 482 ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY SEQRES 28 B 482 ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP SEQRES 29 B 482 LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO SEQRES 30 B 482 GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA SEQRES 31 B 482 PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY SEQRES 32 B 482 GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY SEQRES 33 B 482 MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN SEQRES 34 B 482 TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO SEQRES 35 B 482 GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO SEQRES 36 B 482 LEU GLY GLY ILE PRO SER PRO SER THR GLU GLN SER ALA SEQRES 37 B 482 LYS LYS VAL ARG LYS LYS ALA GLU ASN ALA HIS ASN THR SEQRES 38 B 482 PRO HET HEM A 482 43 HET HEM B 482 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *932(H2 O) HELIX 1 1 PHE A 11 LYS A 15 5 5 HELIX 2 2 ASN A 16 ASN A 21 5 6 HELIX 3 3 LYS A 24 GLY A 37 1 14 HELIX 4 4 SER A 54 CYS A 62 1 9 HELIX 5 5 SER A 72 GLY A 83 1 12 HELIX 6 6 GLU A 93 LEU A 104 1 12 HELIX 7 7 PRO A 105 SER A 108 5 4 HELIX 8 8 GLN A 109 GLN A 110 5 2 HELIX 9 9 ALA A 111 ARG A 132 1 22 HELIX 10 10 VAL A 141 ASN A 159 1 19 HELIX 11 11 ASN A 163 ARG A 167 5 5 HELIX 12 12 HIS A 171 LYS A 187 1 17 HELIX 13 13 LEU A 188 ARG A 190 5 3 HELIX 14 14 ASP A 195 ALA A 197 5 3 HELIX 15 15 TYR A 198 GLY A 227 1 30 HELIX 16 16 ASP A 232 GLY A 240 1 9 HELIX 17 17 ASP A 250 ASN A 283 1 34 HELIX 18 18 ASN A 283 LEU A 298 1 16 HELIX 19 19 SER A 304 GLN A 310 1 7 HELIX 20 20 LEU A 311 TRP A 325 1 15 HELIX 21 21 LEU A 356 HIS A 361 1 6 HELIX 22 22 ASP A 363 GLY A 368 1 6 HELIX 23 23 ARG A 375 GLU A 380 5 6 HELIX 24 24 ASN A 395 ALA A 399 5 5 HELIX 25 25 GLY A 402 HIS A 420 1 19 HELIX 26 26 PHE B 11 LYS B 15 5 5 HELIX 27 27 ASN B 16 ASN B 21 5 6 HELIX 28 28 LYS B 24 GLY B 37 1 14 HELIX 29 29 SER B 54 CYS B 62 1 9 HELIX 30 30 SER B 72 GLY B 83 1 12 HELIX 31 31 GLU B 93 LEU B 104 1 12 HELIX 32 32 PRO B 105 PHE B 107 5 3 HELIX 33 33 SER B 108 ARG B 132 1 25 HELIX 34 34 VAL B 141 ASN B 159 1 19 HELIX 35 35 ASN B 163 ARG B 167 5 5 HELIX 36 36 HIS B 171 LYS B 187 1 17 HELIX 37 37 LYS B 202 GLY B 227 1 26 HELIX 38 38 ASP B 232 GLY B 240 1 9 HELIX 39 39 ASP B 250 ASN B 283 1 34 HELIX 40 40 ASN B 283 LEU B 298 1 16 HELIX 41 41 SER B 304 GLN B 310 1 7 HELIX 42 42 LEU B 311 TRP B 325 1 15 HELIX 43 43 LEU B 356 HIS B 361 1 6 HELIX 44 44 ASP B 363 GLY B 368 1 6 HELIX 45 45 ARG B 375 GLU B 380 5 6 HELIX 46 46 ASN B 395 ALA B 399 5 5 HELIX 47 47 GLY B 402 HIS B 420 1 19 SHEET 1 A 5 ILE A 39 ALA A 44 0 SHEET 2 A 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 A 5 GLU A 352 VAL A 355 1 O MET A 354 N LEU A 52 SHEET 4 A 5 PHE A 331 ALA A 335 -1 N LEU A 333 O LEU A 353 SHEET 5 A 5 PHE A 67 ASN A 70 -1 N ASN A 70 O SER A 332 SHEET 1 B 3 ILE A 139 GLU A 140 0 SHEET 2 B 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 B 3 PHE A 421 GLU A 424 -1 N GLU A 424 O LYS A 447 SHEET 1 C 2 THR A 339 LEU A 341 0 SHEET 2 C 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 D 2 ILE A 433 GLU A 435 0 SHEET 2 D 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 E 5 ILE B 39 ALA B 44 0 SHEET 2 E 5 ARG B 47 LEU B 52 -1 O THR B 49 N PHE B 42 SHEET 3 E 5 GLU B 352 VAL B 355 1 O MET B 354 N ARG B 50 SHEET 4 E 5 PHE B 331 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 E 5 PHE B 67 ASN B 70 -1 N ASN B 70 O SER B 332 SHEET 1 F 3 ILE B 139 GLU B 140 0 SHEET 2 F 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 F 3 PHE B 421 GLU B 424 -1 N GLU B 424 O LYS B 447 SHEET 1 G 2 THR B 339 LEU B 341 0 SHEET 2 G 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 H 2 ILE B 433 GLU B 435 0 SHEET 2 H 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 482 1555 1555 2.33 LINK FE HEM A 482 O HOH A 562 1555 1555 2.63 LINK SG CYS B 400 FE HEM B 482 1555 1555 2.31 CISPEP 1 GLU A 380 ASN A 381 0 -21.29 SITE 1 AC1 26 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC1 26 PHE A 107 ALA A 264 GLY A 265 THR A 268 SITE 3 AC1 26 THR A 269 ALA A 328 PHE A 331 PRO A 392 SITE 4 AC1 26 PHE A 393 GLY A 394 ARG A 398 ALA A 399 SITE 5 AC1 26 CYS A 400 ILE A 401 ALA A 406 HOH A 532 SITE 6 AC1 26 HOH A 534 HOH A 549 HOH A 562 HOH A 600 SITE 7 AC1 26 HOH A 681 HOH A 845 SITE 1 AC2 24 LYS B 69 LEU B 86 PHE B 87 TRP B 96 SITE 2 AC2 24 ALA B 264 GLY B 265 THR B 268 THR B 269 SITE 3 AC2 24 ALA B 328 PHE B 331 PRO B 392 PHE B 393 SITE 4 AC2 24 GLY B 394 ARG B 398 ALA B 399 CYS B 400 SITE 5 AC2 24 ILE B 401 HOH B 483 HOH B 506 HOH B 530 SITE 6 AC2 24 HOH B 573 HOH B 588 HOH B 841 HOH B 850 CRYST1 58.542 148.281 64.368 90.00 99.93 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017082 0.000000 0.002989 0.00000 SCALE2 0.000000 0.006744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015772 0.00000