HEADER TRANSCRIPTION 12-MAR-10 3M52 TITLE CRYSTAL STRUCTURE OF THE BTB DOMAIN FROM THE MIZ-1/ZBTB17 TITLE 2 TRANSCRIPTION REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 17; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BTB DOMAIN FROM MIZ-1/ZBTB17; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 60, ZINC FINGER PROTEIN 151, MYC- COMPND 6 INTERACTING ZINC FINGER PROTEIN 1, MIZ-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MIZ1, ZBTB17, ZNF151, ZNF60; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-32(A) KEYWDS BTB DOMAIN, POZ DOMAIN, BTB/POZ DOMAIN, MIZ-1, ZINC FINGER PROTEIN KEYWDS 2 151, MYC-INTERACTING ZINC FINGER PROTEIN, MIZ-1 PROTEIN, ZFP151, KEYWDS 3 ZFP-151, ZNF151, MIZ1, ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN KEYWDS 4 17, ZINC FINGER PROTEIN 60, PROTEIN-PROTEIN INTERACTION DOMAIN, KEYWDS 5 TRANSCRIPTION REGULATOR, TRANSCRIPTION ACTIVATOR, ZINC-FINGER KEYWDS 6 PROTEIN, ALPHA/BETA PROTEIN, DEVELOPMENTAL PROTEIN, DNA-BINDING, KEYWDS 7 METAL-BINDING, NUCLEUS, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 8 ZINC-FINGER, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,J.A.CUESTA-SEIJO,L.CHEN,G.G.PRIVE REVDAT 3 06-SEP-23 3M52 1 REMARK SEQADV LINK REVDAT 2 28-JUL-10 3M52 1 JRNL REVDAT 1 09-JUN-10 3M52 0 JRNL AUTH P.J.STOGIOS,J.A.CUESTA-SEIJO,L.CHEN,N.C.POMROY,G.G.PRIVE JRNL TITL INSIGHTS INTO STRAND EXCHANGE IN BTB DOMAIN DIMERS FROM THE JRNL TITL 2 CRYSTAL STRUCTURES OF FAZF AND MIZ1. JRNL REF J.MOL.BIOL. V. 400 983 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20493880 JRNL DOI 10.1016/J.JMB.2010.05.028 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 7990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 383 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 531 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.338 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.264 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.233 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1832 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2462 ; 1.145 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 4.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;38.807 ;25.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 309 ;17.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 9.740 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1353 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 794 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1236 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 62 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.080 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 0.431 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1853 ; 0.800 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 695 ; 1.258 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 609 ; 1.644 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR SI REMARK 200 -111 DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR SI-220 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8404 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.670 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09520 REMARK 200 FOR THE DATA SET : 10.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.9 REMARK 200 DATA REDUNDANCY IN SHELL : 0.96 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44830 REMARK 200 FOR SHELL : 3.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: SINGLE CHAIN POLY-ALANINE MODEL OF PDB CODE 1R29 REMARK 200 RESIDUES 7-128, EXCEPT WHERE RESIDUES WERE IDENTICAL BETWEEN REMARK 200 MIZ1 AND 1R29 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 75 MM ZINC ACETATE PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.51150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.85650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.46750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.85650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.51150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.46750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -193.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -33.02300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 5 CB CG CD OE1 NE2 REMARK 470 MET B 1 CB CG SD CE REMARK 470 ASP B 2 CB CG OD1 OD2 REMARK 470 PHE B 3 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 88.42 -158.45 REMARK 500 SER A 65 -39.43 -39.54 REMARK 500 LEU B 23 19.49 59.33 REMARK 500 VAL B 60 136.23 -38.12 REMARK 500 SER B 83 77.07 -109.88 REMARK 500 LEU B 114 99.58 -66.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 116 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 6 ND1 REMARK 620 2 ASP B 103 OD2 120.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 117 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 NE2 REMARK 620 2 HOH A 134 O 102.5 REMARK 620 3 HOH A 138 O 88.8 57.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 119 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD2 REMARK 620 2 ASP A 58 OD2 88.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 116 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ACT A 120 OXT 93.4 REMARK 620 3 ACT A 120 O 144.0 57.1 REMARK 620 4 HIS B 6 ND1 107.0 140.2 89.0 REMARK 620 5 HIS B 9 ND1 107.4 88.4 93.1 116.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 121 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M5B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BTB DOMAIN FROM FAZF/ZBTB32 REMARK 900 RELATED ID: 3M4T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BTB DOMAIN FROM KAISO/ZBTB33 DBREF 3M52 A 1 115 UNP Q13105 ZBT17_HUMAN 1 115 DBREF 3M52 B 1 115 UNP Q13105 ZBT17_HUMAN 1 115 SEQADV 3M52 GLY A -1 UNP Q13105 EXPRESSION TAG SEQADV 3M52 SER A 0 UNP Q13105 EXPRESSION TAG SEQADV 3M52 GLY B -1 UNP Q13105 EXPRESSION TAG SEQADV 3M52 SER B 0 UNP Q13105 EXPRESSION TAG SEQRES 1 A 117 GLY SER MET ASP PHE PRO GLN HIS SER GLN HIS VAL LEU SEQRES 2 A 117 GLU GLN LEU ASN GLN GLN ARG GLN LEU GLY LEU LEU CYS SEQRES 3 A 117 ASP CYS THR PHE VAL VAL ASP GLY VAL HIS PHE LYS ALA SEQRES 4 A 117 HIS LYS ALA VAL LEU ALA ALA CYS SER GLU TYR PHE LYS SEQRES 5 A 117 MET LEU PHE VAL ASP GLN LYS ASP VAL VAL HIS LEU ASP SEQRES 6 A 117 ILE SER ASN ALA ALA GLY LEU GLY GLN VAL LEU GLU PHE SEQRES 7 A 117 MET TYR THR ALA LYS LEU SER LEU SER PRO GLU ASN VAL SEQRES 8 A 117 ASP ASP VAL LEU ALA VAL ALA THR PHE LEU GLN MET GLN SEQRES 9 A 117 ASP ILE ILE THR ALA CYS HIS ALA LEU LYS SER LEU ALA SEQRES 1 B 117 GLY SER MET ASP PHE PRO GLN HIS SER GLN HIS VAL LEU SEQRES 2 B 117 GLU GLN LEU ASN GLN GLN ARG GLN LEU GLY LEU LEU CYS SEQRES 3 B 117 ASP CYS THR PHE VAL VAL ASP GLY VAL HIS PHE LYS ALA SEQRES 4 B 117 HIS LYS ALA VAL LEU ALA ALA CYS SER GLU TYR PHE LYS SEQRES 5 B 117 MET LEU PHE VAL ASP GLN LYS ASP VAL VAL HIS LEU ASP SEQRES 6 B 117 ILE SER ASN ALA ALA GLY LEU GLY GLN VAL LEU GLU PHE SEQRES 7 B 117 MET TYR THR ALA LYS LEU SER LEU SER PRO GLU ASN VAL SEQRES 8 B 117 ASP ASP VAL LEU ALA VAL ALA THR PHE LEU GLN MET GLN SEQRES 9 B 117 ASP ILE ILE THR ALA CYS HIS ALA LEU LYS SER LEU ALA HET ZN A 116 1 HET ZN A 117 1 HET ZN A 118 1 HET ZN A 119 1 HET ACT A 120 4 HET ACT A 121 4 HET ZN B 116 1 HET ZN B 117 1 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 3 ZN 6(ZN 2+) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 11 HOH *44(H2 O) HELIX 1 1 ASP A 2 GLN A 19 1 18 HELIX 2 2 HIS A 38 SER A 46 1 9 HELIX 3 3 SER A 46 GLN A 56 1 11 HELIX 4 4 LYS A 57 VAL A 59 5 3 HELIX 5 5 GLY A 69 ALA A 80 1 12 HELIX 6 6 ASN A 88 GLN A 100 1 13 HELIX 7 7 MET A 101 ALA A 115 1 15 HELIX 8 8 PRO B 4 LEU B 20 1 17 HELIX 9 9 HIS B 38 SER B 46 1 9 HELIX 10 10 SER B 46 ASP B 55 1 10 HELIX 11 11 GLN B 56 VAL B 59 5 4 HELIX 12 12 GLY B 69 GLY B 71 5 3 HELIX 13 13 GLN B 72 ALA B 80 1 9 HELIX 14 14 ASN B 88 LEU B 99 1 12 HELIX 15 15 MET B 101 SER B 113 1 13 SHEET 1 A 2 CYS A 26 VAL A 30 0 SHEET 2 A 2 VAL A 33 ALA A 37 -1 O PHE A 35 N PHE A 28 SHEET 1 B 2 LYS A 81 LEU A 82 0 SHEET 2 B 2 MET B 1 ASP B 2 -1 O MET B 1 N LEU A 82 SHEET 1 C 2 CYS B 26 VAL B 30 0 SHEET 2 C 2 VAL B 33 ALA B 37 -1 O PHE B 35 N PHE B 28 LINK ND1 HIS A 6 ZN ZN A 116 1555 1555 2.06 LINK NE2 HIS A 34 ZN ZN A 117 1555 1555 2.09 LINK OD2 ASP A 55 ZN ZN A 119 1555 1555 1.99 LINK OD2 ASP A 58 ZN ZN A 119 1555 1555 1.99 LINK OD2 ASP A 103 ZN ZN B 116 1555 1555 1.99 LINK ZN ZN A 116 OD2 ASP B 103 1555 1555 2.00 LINK ZN ZN A 117 O HOH A 134 1555 1555 2.64 LINK ZN ZN A 117 O HOH A 138 1555 1555 2.49 LINK OXT ACT A 120 ZN ZN B 116 1555 1555 1.98 LINK O ACT A 120 ZN ZN B 116 1555 1555 2.40 LINK ND1 HIS B 6 ZN ZN B 116 1555 1555 2.08 LINK ND1 HIS B 9 ZN ZN B 116 1555 1555 2.09 LINK NE2 HIS B 34 ZN ZN B 117 1555 1555 2.08 SITE 1 AC1 4 HIS A 6 HIS A 9 HOH A 122 ASP B 103 SITE 1 AC2 3 HIS A 34 HOH A 134 HOH A 138 SITE 1 AC3 4 ASP A 103 ACT A 120 HIS B 6 HIS B 9 SITE 1 AC4 1 HIS B 34 SITE 1 AC5 3 GLU A 87 LYS B 57 HIS B 61 SITE 1 AC6 3 ASP A 55 ASP A 58 VAL B 54 SITE 1 AC7 9 CYS A 45 PHE A 76 MET A 101 GLN A 102 SITE 2 AC7 9 ASP A 103 ILE A 104 HIS B 6 HIS B 9 SITE 3 AC7 9 ZN B 116 SITE 1 AC8 4 GLY A 69 LEU A 70 GLY A 71 GLN A 72 CRYST1 33.023 80.935 95.713 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010448 0.00000