data_3M59 # _entry.id 3M59 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3M59 pdb_00003m59 10.2210/pdb3m59/pdb RCSB RCSB058124 ? ? WWPDB D_1000058124 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2F69 'Ternary complex of SET7/9 bound to AdoHcy and a TAF10 peptide' unspecified PDB 3M54 . unspecified PDB 3M55 . unspecified PDB 3M56 . unspecified PDB 3M57 . unspecified PDB 3M58 . unspecified PDB 3M53 . unspecified PDB 3M5A . unspecified # _pdbx_database_status.entry_id 3M59 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-12 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Del Rizzo, P.A.' 1 'Couture, J.-F.' 2 'Roiko, M.S.' 3 'Strunk, B.S.' 4 'Brunzelle, J.S.' 5 'Dirk, L.M.' 6 'Houtz, R.L.' 7 'Trievel, R.C.' 8 # _citation.id primary _citation.title 'SET7/9 catalytic mutants reveal the role of active site water molecules in lysine multiple methylation.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 31849 _citation.page_last 31858 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20675860 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.114587 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Del Rizzo, P.A.' 1 ? primary 'Couture, J.F.' 2 ? primary 'Dirk, L.M.' 3 ? primary 'Strunk, B.S.' 4 ? primary 'Roiko, M.S.' 5 ? primary 'Brunzelle, J.S.' 6 ? primary 'Houtz, R.L.' 7 ? primary 'Trievel, R.C.' 8 ? # _cell.length_a 83.497 _cell.length_b 83.497 _cell.length_c 95.718 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3M59 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3M59 _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase SETD7' 28951.236 1 2.1.1.43 Y245A 'UNP residues 110-366' ? 2 polymer syn 'TAF10-K189me2 Peptide' 1282.511 1 ? ? ? ? 3 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 1 ? ? ? ? 4 non-polymer syn 'COBALT (II) ION' 58.933 3 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 6 water nat water 18.015 237 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Histone H3-K4 methyltransferase SETD7, H3-K4-HMTase SETD7, SET domain-containing protein 7, SET7/9, Lysine N-methyltransferase 7' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELM PGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFANGVRITHQEVDSRDWALNGN TLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKS GPEAPEWYQVELKAFQATQQK ; ;GAMGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELM PGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFANGVRITHQEVDSRDWALNGN TLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKS GPEAPEWYQVELKAFQATQQK ; A ? 2 'polypeptide(L)' no yes '(ACE)SKS(MLY)DRKYTL' XSKSKDRKYTL B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 TYR n 1 6 LYS n 1 7 ASP n 1 8 ASN n 1 9 ILE n 1 10 ARG n 1 11 HIS n 1 12 GLY n 1 13 VAL n 1 14 CYS n 1 15 TRP n 1 16 ILE n 1 17 TYR n 1 18 TYR n 1 19 PRO n 1 20 ASP n 1 21 GLY n 1 22 GLY n 1 23 SER n 1 24 LEU n 1 25 VAL n 1 26 GLY n 1 27 GLU n 1 28 VAL n 1 29 ASN n 1 30 GLU n 1 31 ASP n 1 32 GLY n 1 33 GLU n 1 34 MET n 1 35 THR n 1 36 GLY n 1 37 GLU n 1 38 LYS n 1 39 ILE n 1 40 ALA n 1 41 TYR n 1 42 VAL n 1 43 TYR n 1 44 PRO n 1 45 ASP n 1 46 GLU n 1 47 ARG n 1 48 THR n 1 49 ALA n 1 50 LEU n 1 51 TYR n 1 52 GLY n 1 53 LYS n 1 54 PHE n 1 55 ILE n 1 56 ASP n 1 57 GLY n 1 58 GLU n 1 59 MET n 1 60 ILE n 1 61 GLU n 1 62 GLY n 1 63 LYS n 1 64 LEU n 1 65 ALA n 1 66 THR n 1 67 LEU n 1 68 MET n 1 69 SER n 1 70 THR n 1 71 GLU n 1 72 GLU n 1 73 GLY n 1 74 ARG n 1 75 PRO n 1 76 HIS n 1 77 PHE n 1 78 GLU n 1 79 LEU n 1 80 MET n 1 81 PRO n 1 82 GLY n 1 83 ASN n 1 84 SER n 1 85 VAL n 1 86 TYR n 1 87 HIS n 1 88 PHE n 1 89 ASP n 1 90 LYS n 1 91 SER n 1 92 THR n 1 93 SER n 1 94 SER n 1 95 CYS n 1 96 ILE n 1 97 SER n 1 98 THR n 1 99 ASN n 1 100 ALA n 1 101 LEU n 1 102 LEU n 1 103 PRO n 1 104 ASP n 1 105 PRO n 1 106 TYR n 1 107 GLU n 1 108 SER n 1 109 GLU n 1 110 ARG n 1 111 VAL n 1 112 TYR n 1 113 VAL n 1 114 ALA n 1 115 GLU n 1 116 SER n 1 117 LEU n 1 118 ILE n 1 119 SER n 1 120 SER n 1 121 ALA n 1 122 GLY n 1 123 GLU n 1 124 GLY n 1 125 LEU n 1 126 PHE n 1 127 SER n 1 128 LYS n 1 129 VAL n 1 130 ALA n 1 131 VAL n 1 132 GLY n 1 133 PRO n 1 134 ASN n 1 135 THR n 1 136 VAL n 1 137 MET n 1 138 SER n 1 139 PHE n 1 140 ALA n 1 141 ASN n 1 142 GLY n 1 143 VAL n 1 144 ARG n 1 145 ILE n 1 146 THR n 1 147 HIS n 1 148 GLN n 1 149 GLU n 1 150 VAL n 1 151 ASP n 1 152 SER n 1 153 ARG n 1 154 ASP n 1 155 TRP n 1 156 ALA n 1 157 LEU n 1 158 ASN n 1 159 GLY n 1 160 ASN n 1 161 THR n 1 162 LEU n 1 163 SER n 1 164 LEU n 1 165 ASP n 1 166 GLU n 1 167 GLU n 1 168 THR n 1 169 VAL n 1 170 ILE n 1 171 ASP n 1 172 VAL n 1 173 PRO n 1 174 GLU n 1 175 PRO n 1 176 TYR n 1 177 ASN n 1 178 HIS n 1 179 VAL n 1 180 SER n 1 181 LYS n 1 182 TYR n 1 183 CYS n 1 184 ALA n 1 185 SER n 1 186 LEU n 1 187 GLY n 1 188 HIS n 1 189 LYS n 1 190 ALA n 1 191 ASN n 1 192 HIS n 1 193 SER n 1 194 PHE n 1 195 THR n 1 196 PRO n 1 197 ASN n 1 198 CYS n 1 199 ILE n 1 200 TYR n 1 201 ASP n 1 202 MET n 1 203 PHE n 1 204 VAL n 1 205 HIS n 1 206 PRO n 1 207 ARG n 1 208 PHE n 1 209 GLY n 1 210 PRO n 1 211 ILE n 1 212 LYS n 1 213 CYS n 1 214 ILE n 1 215 ARG n 1 216 THR n 1 217 LEU n 1 218 ARG n 1 219 ALA n 1 220 VAL n 1 221 GLU n 1 222 ALA n 1 223 ASP n 1 224 GLU n 1 225 GLU n 1 226 LEU n 1 227 THR n 1 228 VAL n 1 229 ALA n 1 230 TYR n 1 231 GLY n 1 232 TYR n 1 233 ASP n 1 234 HIS n 1 235 SER n 1 236 PRO n 1 237 PRO n 1 238 GLY n 1 239 LYS n 1 240 SER n 1 241 GLY n 1 242 PRO n 1 243 GLU n 1 244 ALA n 1 245 PRO n 1 246 GLU n 1 247 TRP n 1 248 TYR n 1 249 GLN n 1 250 VAL n 1 251 GLU n 1 252 LEU n 1 253 LYS n 1 254 ALA n 1 255 PHE n 1 256 GLN n 1 257 ALA n 1 258 THR n 1 259 GLN n 1 260 GLN n 1 261 LYS n 2 1 ACE n 2 2 SER n 2 3 LYS n 2 4 SER n 2 5 MLY n 2 6 ASP n 2 7 ARG n 2 8 LYS n 2 9 TYR n 2 10 THR n 2 11 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KIAA1717, KMT7, SET7, SET9, SETD7' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 9606 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)Rosetta2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHIS2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SETD7_HUMAN Q8WTS6 1 ;YKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNS VYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSL DEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEA PEWYQVELKAFQATQQK ; 110 ? 2 PDB 3M59 3M59 2 XSKSKDRKYTL ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3M59 A 5 ? 261 ? Q8WTS6 110 ? 366 ? 110 366 2 2 3M59 B 1 ? 11 ? 3M59 185 ? 195 ? 185 195 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3M59 GLY A 1 ? UNP Q8WTS6 ? ? 'expression tag' 106 1 1 3M59 ALA A 2 ? UNP Q8WTS6 ? ? 'expression tag' 107 2 1 3M59 MET A 3 ? UNP Q8WTS6 ? ? 'expression tag' 108 3 1 3M59 GLY A 4 ? UNP Q8WTS6 ? ? 'expression tag' 109 4 1 3M59 ALA A 140 ? UNP Q8WTS6 TYR 245 'engineered mutation' 245 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3M59 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.19 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '1.9 M Ammonium Sulfate, 0.1 M Bis-Tris pH 6.4, 0.005 M CoCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-08-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'C(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9786 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.pdbx_wavelength_list 0.9786 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-G # _reflns.entry_id 3M59 _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 40.000 _reflns.number_obs 40597 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_netI_over_sigmaI 15.100 _reflns.pdbx_chi_squared 1.394 _reflns.pdbx_redundancy 6.000 _reflns.percent_possible_obs 95.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.70 1.76 ? ? ? 0.527 ? ? 0.911 3.30 ? 3707 88.10 1 1 1.76 1.83 ? ? ? 0.457 ? ? 0.884 5.10 ? 4101 97.50 2 1 1.83 1.91 ? ? ? 0.322 ? ? 0.885 6.10 ? 4121 97.90 3 1 1.91 2.02 ? ? ? 0.226 ? ? 0.934 6.30 ? 4153 97.70 4 1 2.02 2.14 ? ? ? 0.141 ? ? 0.990 6.40 ? 4130 97.10 5 1 2.14 2.31 ? ? ? 0.100 ? ? 1.098 6.40 ? 4094 96.70 6 1 2.31 2.54 ? ? ? 0.084 ? ? 1.381 6.50 ? 4093 96.00 7 1 2.54 2.91 ? ? ? 0.062 ? ? 1.683 6.50 ? 4062 95.10 8 1 2.91 3.66 ? ? ? 0.041 ? ? 1.991 6.60 ? 4071 94.00 9 1 3.66 40.00 ? ? ? 0.031 ? ? 2.707 6.50 ? 4065 90.30 10 1 # _refine.entry_id 3M59 _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 36.160 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.090 _refine.ls_number_reflns_obs 40595 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_R_work 0.187 _refine.ls_wR_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.206 _refine.ls_wR_factor_R_free 0.211 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 2034 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.057 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.100 _refine.aniso_B[2][2] 0.100 _refine.aniso_B[3][3] -0.150 _refine.aniso_B[1][2] 0.050 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.overall_SU_R_Cruickshank_DPI 0.092 _refine.overall_SU_R_free 0.089 _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_overall_ESU_R_Free 0.089 _refine.overall_SU_ML 0.057 _refine.overall_SU_B 1.733 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 2F69' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.872 _refine.B_iso_max 102.66 _refine.B_iso_min 11.76 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1955 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 2245 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 36.160 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2115 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2888 1.522 1.980 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 272 6.033 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 93 36.481 24.086 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 319 11.641 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 15.260 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 314 0.119 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1622 0.008 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1298 1.109 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2099 1.996 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 817 2.660 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 778 4.335 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.747 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 85.880 _refine_ls_shell.number_reflns_R_work 2525 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.357 _refine_ls_shell.R_factor_R_free 0.372 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 145 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2670 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3M59 _struct.title 'SET7/9 Y245A in complex with TAF10-K189me2 peptide and AdoHcy' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3M59 _struct_keywords.text ;TERNARY COMPLEX, SET DOMAIN, METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE, TAF10 PEPTIDE, N-DIMETHYLLYSINE, Chromatin regulator, Chromosomal protein, Nucleus, S-adenosyl-L-methionine, Transcription, Transcription regulation, Transferase ; _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 6 ? L N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 104 ? GLU A 109 ? ASP A 209 GLU A 214 1 ? 6 HELX_P HELX_P2 2 THR A 146 ? SER A 152 ? THR A 251 SER A 257 1 ? 7 HELX_P HELX_P3 3 ASP A 154 ? ASN A 158 ? ASP A 259 ASN A 263 5 ? 5 HELX_P HELX_P4 4 LEU A 186 ? ALA A 190 ? LEU A 291 ALA A 295 5 ? 5 HELX_P HELX_P5 5 PRO A 245 ? GLN A 259 ? PRO A 350 GLN A 364 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ACE 1 C ? ? ? 1_555 B SER 2 N ? ? B ACE 185 B SER 186 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale2 covale both ? B SER 4 C ? ? ? 1_555 B MLY 5 N ? ? B SER 188 B MLY 189 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale3 covale both ? B MLY 5 C ? ? ? 1_555 B ASP 6 N ? ? B MLY 189 B ASP 190 1_555 ? ? ? ? ? ? ? 1.336 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 174 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 279 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 175 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 280 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 4 ? D ? 3 ? E ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 14 ? TYR A 17 ? CYS A 119 TYR A 122 A 2 SER A 23 ? GLY A 26 ? SER A 128 GLY A 131 A 3 GLY A 36 ? VAL A 42 ? GLY A 141 VAL A 147 A 4 THR A 48 ? ILE A 55 ? THR A 153 ILE A 160 A 5 GLU A 58 ? GLU A 71 ? GLU A 163 GLU A 176 A 6 ARG A 74 ? LEU A 79 ? ARG A 179 LEU A 184 B 1 CYS A 14 ? TYR A 17 ? CYS A 119 TYR A 122 B 2 SER A 23 ? GLY A 26 ? SER A 128 GLY A 131 B 3 GLY A 36 ? VAL A 42 ? GLY A 141 VAL A 147 B 4 THR A 48 ? ILE A 55 ? THR A 153 ILE A 160 B 5 GLU A 58 ? GLU A 71 ? GLU A 163 GLU A 176 B 6 VAL A 85 ? TYR A 86 ? VAL A 190 TYR A 191 C 1 VAL A 111 ? GLU A 115 ? VAL A 216 GLU A 220 C 2 GLU A 123 ? SER A 127 ? GLU A 228 SER A 232 C 3 GLU A 225 ? VAL A 228 ? GLU A 330 VAL A 333 C 4 ASN A 191 ? HIS A 192 ? ASN A 296 HIS A 297 D 1 VAL A 136 ? ALA A 140 ? VAL A 241 ALA A 245 D 2 GLY A 209 ? THR A 216 ? GLY A 314 THR A 321 D 3 CYS A 198 ? HIS A 205 ? CYS A 303 HIS A 310 E 1 VAL A 143 ? ILE A 145 ? VAL A 248 ILE A 250 E 2 VAL A 169 ? ASP A 171 ? VAL A 274 ASP A 276 E 3 LEU A 162 ? SER A 163 ? LEU A 267 SER A 268 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 14 ? N CYS A 119 O GLY A 26 ? O GLY A 131 A 2 3 N SER A 23 ? N SER A 128 O VAL A 42 ? O VAL A 147 A 3 4 N ILE A 39 ? N ILE A 144 O GLY A 52 ? O GLY A 157 A 4 5 N TYR A 51 ? N TYR A 156 O LYS A 63 ? O LYS A 168 A 5 6 N SER A 69 ? N SER A 174 O HIS A 76 ? O HIS A 181 B 1 2 N CYS A 14 ? N CYS A 119 O GLY A 26 ? O GLY A 131 B 2 3 N SER A 23 ? N SER A 128 O VAL A 42 ? O VAL A 147 B 3 4 N ILE A 39 ? N ILE A 144 O GLY A 52 ? O GLY A 157 B 4 5 N TYR A 51 ? N TYR A 156 O LYS A 63 ? O LYS A 168 B 5 6 N GLY A 62 ? N GLY A 167 O TYR A 86 ? O TYR A 191 C 1 2 N ALA A 114 ? N ALA A 219 O GLY A 124 ? O GLY A 229 C 2 3 N LEU A 125 ? N LEU A 230 O LEU A 226 ? O LEU A 331 C 3 4 O VAL A 228 ? O VAL A 333 N ASN A 191 ? N ASN A 296 D 1 2 N MET A 137 ? N MET A 242 O ILE A 214 ? O ILE A 319 D 2 3 O ILE A 211 ? O ILE A 316 N PHE A 203 ? N PHE A 308 E 1 2 N ILE A 145 ? N ILE A 250 O VAL A 169 ? O VAL A 274 E 2 3 O ILE A 170 ? O ILE A 275 N LEU A 162 ? N LEU A 267 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SAH 1 ? 18 'BINDING SITE FOR RESIDUE SAH A 1' AC2 Software A CO 367 ? 1 'BINDING SITE FOR RESIDUE CO A 367' AC3 Software A CO 2 ? 2 'BINDING SITE FOR RESIDUE CO A 2' AC4 Software A CO 3 ? 2 'BINDING SITE FOR RESIDUE CO A 3' AC5 Software A GOL 368 ? 5 'BINDING SITE FOR RESIDUE GOL A 368' AC6 Software A GOL 369 ? 5 'BINDING SITE FOR RESIDUE GOL A 369' AC7 Software A GOL 4 ? 3 'BINDING SITE FOR RESIDUE GOL A 4' AC8 Software A GOL 6 ? 5 'BINDING SITE FOR RESIDUE GOL A 6' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 HOH K . ? HOH A 33 . ? 1_555 ? 2 AC1 18 HOH K . ? HOH A 54 . ? 1_555 ? 3 AC1 18 HOH K . ? HOH A 96 . ? 1_555 ? 4 AC1 18 ALA A 121 ? ALA A 226 . ? 1_555 ? 5 AC1 18 GLU A 123 ? GLU A 228 . ? 1_555 ? 6 AC1 18 GLY A 159 ? GLY A 264 . ? 1_555 ? 7 AC1 18 ASN A 160 ? ASN A 265 . ? 1_555 ? 8 AC1 18 HIS A 188 ? HIS A 293 . ? 1_555 ? 9 AC1 18 LYS A 189 ? LYS A 294 . ? 1_555 ? 10 AC1 18 ASN A 191 ? ASN A 296 . ? 1_555 ? 11 AC1 18 HIS A 192 ? HIS A 297 . ? 1_555 ? 12 AC1 18 TYR A 230 ? TYR A 335 . ? 1_555 ? 13 AC1 18 TRP A 247 ? TRP A 352 . ? 1_555 ? 14 AC1 18 GLU A 251 ? GLU A 356 . ? 1_555 ? 15 AC1 18 HOH K . ? HOH A 411 . ? 1_555 ? 16 AC1 18 HOH K . ? HOH A 475 . ? 1_555 ? 17 AC1 18 HOH K . ? HOH A 489 . ? 1_555 ? 18 AC1 18 MLY B 5 ? MLY B 189 . ? 1_555 ? 19 AC2 1 SER A 180 ? SER A 285 . ? 1_555 ? 20 AC3 2 GLU A 246 ? GLU A 351 . ? 1_555 ? 21 AC3 2 TRP A 247 ? TRP A 352 . ? 1_555 ? 22 AC4 2 ASN A 99 ? ASN A 204 . ? 1_555 ? 23 AC4 2 ALA A 219 ? ALA A 324 . ? 2_544 ? 24 AC5 5 HOH K . ? HOH A 48 . ? 1_555 ? 25 AC5 5 TYR A 51 ? TYR A 156 . ? 1_555 ? 26 AC5 5 ARG A 74 ? ARG A 179 . ? 1_555 ? 27 AC5 5 PRO A 75 ? PRO A 180 . ? 1_555 ? 28 AC5 5 GOL H . ? GOL A 369 . ? 1_555 ? 29 AC6 5 HOH K . ? HOH A 38 . ? 4_655 ? 30 AC6 5 TYR A 51 ? TYR A 156 . ? 1_555 ? 31 AC6 5 HIS A 76 ? HIS A 181 . ? 1_555 ? 32 AC6 5 PHE A 77 ? PHE A 182 . ? 1_555 ? 33 AC6 5 GOL G . ? GOL A 368 . ? 1_555 ? 34 AC7 3 HOH K . ? HOH A 58 . ? 1_555 ? 35 AC7 3 HOH K . ? HOH A 69 . ? 1_555 ? 36 AC7 3 ARG A 110 ? ARG A 215 . ? 1_555 ? 37 AC8 5 ARG A 47 ? ARG A 152 . ? 1_555 ? 38 AC8 5 MET A 68 ? MET A 173 . ? 1_555 ? 39 AC8 5 SER A 69 ? SER A 174 . ? 1_555 ? 40 AC8 5 THR A 70 ? THR A 175 . ? 1_555 ? 41 AC8 5 HOH K . ? HOH A 435 . ? 1_555 ? # _atom_sites.entry_id 3M59 _atom_sites.fract_transf_matrix[1][1] 0.011976 _atom_sites.fract_transf_matrix[1][2] 0.006915 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013829 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010447 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 106 ? ? ? A . n A 1 2 ALA 2 107 ? ? ? A . n A 1 3 MET 3 108 ? ? ? A . n A 1 4 GLY 4 109 ? ? ? A . n A 1 5 TYR 5 110 ? ? ? A . n A 1 6 LYS 6 111 ? ? ? A . n A 1 7 ASP 7 112 ? ? ? A . n A 1 8 ASN 8 113 ? ? ? A . n A 1 9 ILE 9 114 ? ? ? A . n A 1 10 ARG 10 115 ? ? ? A . n A 1 11 HIS 11 116 116 HIS HIS A . n A 1 12 GLY 12 117 117 GLY GLY A . n A 1 13 VAL 13 118 118 VAL VAL A . n A 1 14 CYS 14 119 119 CYS CYS A . n A 1 15 TRP 15 120 120 TRP TRP A . n A 1 16 ILE 16 121 121 ILE ILE A . n A 1 17 TYR 17 122 122 TYR TYR A . n A 1 18 TYR 18 123 123 TYR TYR A . n A 1 19 PRO 19 124 124 PRO PRO A . n A 1 20 ASP 20 125 125 ASP ASP A . n A 1 21 GLY 21 126 126 GLY GLY A . n A 1 22 GLY 22 127 127 GLY GLY A . n A 1 23 SER 23 128 128 SER SER A . n A 1 24 LEU 24 129 129 LEU LEU A . n A 1 25 VAL 25 130 130 VAL VAL A . n A 1 26 GLY 26 131 131 GLY GLY A . n A 1 27 GLU 27 132 132 GLU GLU A . n A 1 28 VAL 28 133 133 VAL VAL A . n A 1 29 ASN 29 134 134 ASN ASN A . n A 1 30 GLU 30 135 135 GLU GLU A . n A 1 31 ASP 31 136 136 ASP ASP A . n A 1 32 GLY 32 137 137 GLY GLY A . n A 1 33 GLU 33 138 138 GLU GLU A . n A 1 34 MET 34 139 139 MET MET A . n A 1 35 THR 35 140 140 THR THR A . n A 1 36 GLY 36 141 141 GLY GLY A . n A 1 37 GLU 37 142 142 GLU GLU A . n A 1 38 LYS 38 143 143 LYS LYS A . n A 1 39 ILE 39 144 144 ILE ILE A . n A 1 40 ALA 40 145 145 ALA ALA A . n A 1 41 TYR 41 146 146 TYR TYR A . n A 1 42 VAL 42 147 147 VAL VAL A . n A 1 43 TYR 43 148 148 TYR TYR A . n A 1 44 PRO 44 149 149 PRO PRO A . n A 1 45 ASP 45 150 150 ASP ASP A . n A 1 46 GLU 46 151 151 GLU GLU A . n A 1 47 ARG 47 152 152 ARG ARG A . n A 1 48 THR 48 153 153 THR THR A . n A 1 49 ALA 49 154 154 ALA ALA A . n A 1 50 LEU 50 155 155 LEU LEU A . n A 1 51 TYR 51 156 156 TYR TYR A . n A 1 52 GLY 52 157 157 GLY GLY A . n A 1 53 LYS 53 158 158 LYS LYS A . n A 1 54 PHE 54 159 159 PHE PHE A . n A 1 55 ILE 55 160 160 ILE ILE A . n A 1 56 ASP 56 161 161 ASP ASP A . n A 1 57 GLY 57 162 162 GLY GLY A . n A 1 58 GLU 58 163 163 GLU GLU A . n A 1 59 MET 59 164 164 MET MET A . n A 1 60 ILE 60 165 165 ILE ILE A . n A 1 61 GLU 61 166 166 GLU GLU A . n A 1 62 GLY 62 167 167 GLY GLY A . n A 1 63 LYS 63 168 168 LYS LYS A . n A 1 64 LEU 64 169 169 LEU LEU A . n A 1 65 ALA 65 170 170 ALA ALA A . n A 1 66 THR 66 171 171 THR THR A . n A 1 67 LEU 67 172 172 LEU LEU A . n A 1 68 MET 68 173 173 MET MET A . n A 1 69 SER 69 174 174 SER SER A . n A 1 70 THR 70 175 175 THR THR A . n A 1 71 GLU 71 176 176 GLU GLU A . n A 1 72 GLU 72 177 177 GLU GLU A . n A 1 73 GLY 73 178 178 GLY GLY A . n A 1 74 ARG 74 179 179 ARG ARG A . n A 1 75 PRO 75 180 180 PRO PRO A . n A 1 76 HIS 76 181 181 HIS HIS A . n A 1 77 PHE 77 182 182 PHE PHE A . n A 1 78 GLU 78 183 183 GLU GLU A . n A 1 79 LEU 79 184 184 LEU LEU A . n A 1 80 MET 80 185 185 MET MET A . n A 1 81 PRO 81 186 186 PRO PRO A . n A 1 82 GLY 82 187 187 GLY GLY A . n A 1 83 ASN 83 188 188 ASN ASN A . n A 1 84 SER 84 189 189 SER SER A . n A 1 85 VAL 85 190 190 VAL VAL A . n A 1 86 TYR 86 191 191 TYR TYR A . n A 1 87 HIS 87 192 192 HIS HIS A . n A 1 88 PHE 88 193 193 PHE PHE A . n A 1 89 ASP 89 194 194 ASP ASP A . n A 1 90 LYS 90 195 195 LYS LYS A . n A 1 91 SER 91 196 196 SER SER A . n A 1 92 THR 92 197 197 THR THR A . n A 1 93 SER 93 198 198 SER SER A . n A 1 94 SER 94 199 199 SER SER A . n A 1 95 CYS 95 200 200 CYS CYS A . n A 1 96 ILE 96 201 201 ILE ILE A . n A 1 97 SER 97 202 202 SER SER A . n A 1 98 THR 98 203 203 THR THR A . n A 1 99 ASN 99 204 204 ASN ASN A . n A 1 100 ALA 100 205 205 ALA ALA A . n A 1 101 LEU 101 206 206 LEU LEU A . n A 1 102 LEU 102 207 207 LEU LEU A . n A 1 103 PRO 103 208 208 PRO PRO A . n A 1 104 ASP 104 209 209 ASP ASP A . n A 1 105 PRO 105 210 210 PRO PRO A . n A 1 106 TYR 106 211 211 TYR TYR A . n A 1 107 GLU 107 212 212 GLU GLU A . n A 1 108 SER 108 213 213 SER SER A . n A 1 109 GLU 109 214 214 GLU GLU A . n A 1 110 ARG 110 215 215 ARG ARG A . n A 1 111 VAL 111 216 216 VAL VAL A . n A 1 112 TYR 112 217 217 TYR TYR A . n A 1 113 VAL 113 218 218 VAL VAL A . n A 1 114 ALA 114 219 219 ALA ALA A . n A 1 115 GLU 115 220 220 GLU GLU A . n A 1 116 SER 116 221 221 SER SER A . n A 1 117 LEU 117 222 222 LEU LEU A . n A 1 118 ILE 118 223 223 ILE ILE A . n A 1 119 SER 119 224 224 SER SER A . n A 1 120 SER 120 225 225 SER SER A . n A 1 121 ALA 121 226 226 ALA ALA A . n A 1 122 GLY 122 227 227 GLY GLY A . n A 1 123 GLU 123 228 228 GLU GLU A . n A 1 124 GLY 124 229 229 GLY GLY A . n A 1 125 LEU 125 230 230 LEU LEU A . n A 1 126 PHE 126 231 231 PHE PHE A . n A 1 127 SER 127 232 232 SER SER A . n A 1 128 LYS 128 233 233 LYS LYS A . n A 1 129 VAL 129 234 234 VAL VAL A . n A 1 130 ALA 130 235 235 ALA ALA A . n A 1 131 VAL 131 236 236 VAL VAL A . n A 1 132 GLY 132 237 237 GLY GLY A . n A 1 133 PRO 133 238 238 PRO PRO A . n A 1 134 ASN 134 239 239 ASN ASN A . n A 1 135 THR 135 240 240 THR THR A . n A 1 136 VAL 136 241 241 VAL VAL A . n A 1 137 MET 137 242 242 MET MET A . n A 1 138 SER 138 243 243 SER SER A . n A 1 139 PHE 139 244 244 PHE PHE A . n A 1 140 ALA 140 245 245 ALA ALA A . n A 1 141 ASN 141 246 246 ASN ASN A . n A 1 142 GLY 142 247 247 GLY GLY A . n A 1 143 VAL 143 248 248 VAL VAL A . n A 1 144 ARG 144 249 249 ARG ARG A . n A 1 145 ILE 145 250 250 ILE ILE A . n A 1 146 THR 146 251 251 THR THR A . n A 1 147 HIS 147 252 252 HIS HIS A . n A 1 148 GLN 148 253 253 GLN GLN A . n A 1 149 GLU 149 254 254 GLU GLU A . n A 1 150 VAL 150 255 255 VAL VAL A . n A 1 151 ASP 151 256 256 ASP ASP A . n A 1 152 SER 152 257 257 SER SER A . n A 1 153 ARG 153 258 258 ARG ARG A . n A 1 154 ASP 154 259 259 ASP ASP A . n A 1 155 TRP 155 260 260 TRP TRP A . n A 1 156 ALA 156 261 261 ALA ALA A . n A 1 157 LEU 157 262 262 LEU LEU A . n A 1 158 ASN 158 263 263 ASN ASN A . n A 1 159 GLY 159 264 264 GLY GLY A . n A 1 160 ASN 160 265 265 ASN ASN A . n A 1 161 THR 161 266 266 THR THR A . n A 1 162 LEU 162 267 267 LEU LEU A . n A 1 163 SER 163 268 268 SER SER A . n A 1 164 LEU 164 269 269 LEU LEU A . n A 1 165 ASP 165 270 270 ASP ASP A . n A 1 166 GLU 166 271 271 GLU GLU A . n A 1 167 GLU 167 272 272 GLU GLU A . n A 1 168 THR 168 273 273 THR THR A . n A 1 169 VAL 169 274 274 VAL VAL A . n A 1 170 ILE 170 275 275 ILE ILE A . n A 1 171 ASP 171 276 276 ASP ASP A . n A 1 172 VAL 172 277 277 VAL VAL A . n A 1 173 PRO 173 278 278 PRO PRO A . n A 1 174 GLU 174 279 279 GLU GLU A . n A 1 175 PRO 175 280 280 PRO PRO A . n A 1 176 TYR 176 281 281 TYR TYR A . n A 1 177 ASN 177 282 282 ASN ASN A . n A 1 178 HIS 178 283 283 HIS HIS A . n A 1 179 VAL 179 284 284 VAL VAL A . n A 1 180 SER 180 285 285 SER SER A . n A 1 181 LYS 181 286 286 LYS LYS A . n A 1 182 TYR 182 287 287 TYR TYR A . n A 1 183 CYS 183 288 288 CYS CYS A . n A 1 184 ALA 184 289 289 ALA ALA A . n A 1 185 SER 185 290 290 SER SER A . n A 1 186 LEU 186 291 291 LEU LEU A . n A 1 187 GLY 187 292 292 GLY GLY A . n A 1 188 HIS 188 293 293 HIS HIS A . n A 1 189 LYS 189 294 294 LYS LYS A . n A 1 190 ALA 190 295 295 ALA ALA A . n A 1 191 ASN 191 296 296 ASN ASN A . n A 1 192 HIS 192 297 297 HIS HIS A . n A 1 193 SER 193 298 298 SER SER A . n A 1 194 PHE 194 299 299 PHE PHE A . n A 1 195 THR 195 300 300 THR THR A . n A 1 196 PRO 196 301 301 PRO PRO A . n A 1 197 ASN 197 302 302 ASN ASN A . n A 1 198 CYS 198 303 303 CYS CYS A . n A 1 199 ILE 199 304 304 ILE ILE A . n A 1 200 TYR 200 305 305 TYR TYR A . n A 1 201 ASP 201 306 306 ASP ASP A . n A 1 202 MET 202 307 307 MET MET A . n A 1 203 PHE 203 308 308 PHE PHE A . n A 1 204 VAL 204 309 309 VAL VAL A . n A 1 205 HIS 205 310 310 HIS HIS A . n A 1 206 PRO 206 311 311 PRO PRO A . n A 1 207 ARG 207 312 312 ARG ARG A . n A 1 208 PHE 208 313 313 PHE PHE A . n A 1 209 GLY 209 314 314 GLY GLY A . n A 1 210 PRO 210 315 315 PRO PRO A . n A 1 211 ILE 211 316 316 ILE ILE A . n A 1 212 LYS 212 317 317 LYS LYS A . n A 1 213 CYS 213 318 318 CYS CYS A . n A 1 214 ILE 214 319 319 ILE ILE A . n A 1 215 ARG 215 320 320 ARG ARG A . n A 1 216 THR 216 321 321 THR THR A . n A 1 217 LEU 217 322 322 LEU LEU A . n A 1 218 ARG 218 323 323 ARG ARG A . n A 1 219 ALA 219 324 324 ALA ALA A . n A 1 220 VAL 220 325 325 VAL VAL A . n A 1 221 GLU 221 326 326 GLU GLU A . n A 1 222 ALA 222 327 327 ALA ALA A . n A 1 223 ASP 223 328 328 ASP ASP A . n A 1 224 GLU 224 329 329 GLU GLU A . n A 1 225 GLU 225 330 330 GLU GLU A . n A 1 226 LEU 226 331 331 LEU LEU A . n A 1 227 THR 227 332 332 THR THR A . n A 1 228 VAL 228 333 333 VAL VAL A . n A 1 229 ALA 229 334 334 ALA ALA A . n A 1 230 TYR 230 335 335 TYR TYR A . n A 1 231 GLY 231 336 336 GLY GLY A . n A 1 232 TYR 232 337 337 TYR TYR A . n A 1 233 ASP 233 338 338 ASP ASP A . n A 1 234 HIS 234 339 339 HIS HIS A . n A 1 235 SER 235 340 340 SER SER A . n A 1 236 PRO 236 341 341 PRO PRO A . n A 1 237 PRO 237 342 ? ? ? A . n A 1 238 GLY 238 343 ? ? ? A . n A 1 239 LYS 239 344 ? ? ? A . n A 1 240 SER 240 345 ? ? ? A . n A 1 241 GLY 241 346 346 GLY GLY A . n A 1 242 PRO 242 347 347 PRO PRO A . n A 1 243 GLU 243 348 348 GLU GLU A . n A 1 244 ALA 244 349 349 ALA ALA A . n A 1 245 PRO 245 350 350 PRO PRO A . n A 1 246 GLU 246 351 351 GLU GLU A . n A 1 247 TRP 247 352 352 TRP TRP A . n A 1 248 TYR 248 353 353 TYR TYR A . n A 1 249 GLN 249 354 354 GLN GLN A . n A 1 250 VAL 250 355 355 VAL VAL A . n A 1 251 GLU 251 356 356 GLU GLU A . n A 1 252 LEU 252 357 357 LEU LEU A . n A 1 253 LYS 253 358 358 LYS LYS A . n A 1 254 ALA 254 359 359 ALA ALA A . n A 1 255 PHE 255 360 360 PHE PHE A . n A 1 256 GLN 256 361 361 GLN GLN A . n A 1 257 ALA 257 362 362 ALA ALA A . n A 1 258 THR 258 363 363 THR THR A . n A 1 259 GLN 259 364 364 GLN GLN A . n A 1 260 GLN 260 365 ? ? ? A . n A 1 261 LYS 261 366 ? ? ? A . n B 2 1 ACE 1 185 185 ACE ACE B . n B 2 2 SER 2 186 186 SER SER B . n B 2 3 LYS 3 187 187 LYS LYS B . n B 2 4 SER 4 188 188 SER SER B . n B 2 5 MLY 5 189 189 MLY MLY B . n B 2 6 ASP 6 190 190 ASP ASP B . n B 2 7 ARG 7 191 191 ARG ARG B . n B 2 8 LYS 8 192 192 LYS LYS B . n B 2 9 TYR 9 193 193 TYR TYR B . n B 2 10 THR 10 194 ? ? ? B . n B 2 11 LEU 11 195 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH 1 1 1 SAH SAH A . D 4 CO 1 367 1 CO CO A . E 4 CO 1 2 2 CO CO A . F 4 CO 1 3 3 CO CO A . G 5 GOL 1 368 2 GOL GOL A . H 5 GOL 1 369 3 GOL GOL A . I 5 GOL 1 4 4 GOL GOL A . J 5 GOL 1 6 6 GOL GOL A . K 6 HOH 1 5 5 HOH HOH A . K 6 HOH 2 7 7 HOH HOH A . K 6 HOH 3 8 8 HOH HOH A . K 6 HOH 4 9 9 HOH HOH A . K 6 HOH 5 10 10 HOH HOH A . K 6 HOH 6 11 11 HOH HOH A . K 6 HOH 7 12 12 HOH HOH A . K 6 HOH 8 13 13 HOH HOH A . K 6 HOH 9 14 14 HOH HOH A . K 6 HOH 10 15 15 HOH HOH A . K 6 HOH 11 16 16 HOH HOH A . K 6 HOH 12 17 17 HOH HOH A . K 6 HOH 13 18 18 HOH HOH A . K 6 HOH 14 19 19 HOH HOH A . K 6 HOH 15 20 20 HOH HOH A . K 6 HOH 16 21 21 HOH HOH A . K 6 HOH 17 22 22 HOH HOH A . K 6 HOH 18 23 23 HOH HOH A . K 6 HOH 19 24 24 HOH HOH A . K 6 HOH 20 25 25 HOH HOH A . K 6 HOH 21 26 26 HOH HOH A . K 6 HOH 22 27 27 HOH HOH A . K 6 HOH 23 28 28 HOH HOH A . K 6 HOH 24 29 29 HOH HOH A . K 6 HOH 25 30 30 HOH HOH A . K 6 HOH 26 31 31 HOH HOH A . K 6 HOH 27 32 32 HOH HOH A . K 6 HOH 28 33 33 HOH HOH A . K 6 HOH 29 34 34 HOH HOH A . K 6 HOH 30 35 35 HOH HOH A . K 6 HOH 31 36 36 HOH HOH A . K 6 HOH 32 37 37 HOH HOH A . K 6 HOH 33 38 38 HOH HOH A . K 6 HOH 34 40 40 HOH HOH A . K 6 HOH 35 41 41 HOH HOH A . K 6 HOH 36 42 42 HOH HOH A . K 6 HOH 37 43 43 HOH HOH A . K 6 HOH 38 44 44 HOH HOH A . K 6 HOH 39 45 45 HOH HOH A . K 6 HOH 40 46 46 HOH HOH A . K 6 HOH 41 47 47 HOH HOH A . K 6 HOH 42 48 48 HOH HOH A . K 6 HOH 43 49 49 HOH HOH A . K 6 HOH 44 50 50 HOH HOH A . K 6 HOH 45 51 51 HOH HOH A . K 6 HOH 46 52 52 HOH HOH A . K 6 HOH 47 53 53 HOH HOH A . K 6 HOH 48 54 54 HOH HOH A . K 6 HOH 49 55 55 HOH HOH A . K 6 HOH 50 56 56 HOH HOH A . K 6 HOH 51 57 57 HOH HOH A . K 6 HOH 52 58 58 HOH HOH A . K 6 HOH 53 59 59 HOH HOH A . K 6 HOH 54 60 60 HOH HOH A . K 6 HOH 55 61 61 HOH HOH A . K 6 HOH 56 64 64 HOH HOH A . K 6 HOH 57 65 65 HOH HOH A . K 6 HOH 58 66 66 HOH HOH A . K 6 HOH 59 67 67 HOH HOH A . K 6 HOH 60 68 68 HOH HOH A . K 6 HOH 61 69 69 HOH HOH A . K 6 HOH 62 70 70 HOH HOH A . K 6 HOH 63 71 71 HOH HOH A . K 6 HOH 64 72 72 HOH HOH A . K 6 HOH 65 73 73 HOH HOH A . K 6 HOH 66 74 74 HOH HOH A . K 6 HOH 67 75 75 HOH HOH A . K 6 HOH 68 76 76 HOH HOH A . K 6 HOH 69 77 77 HOH HOH A . K 6 HOH 70 79 79 HOH HOH A . K 6 HOH 71 80 80 HOH HOH A . K 6 HOH 72 81 81 HOH HOH A . K 6 HOH 73 82 82 HOH HOH A . K 6 HOH 74 83 83 HOH HOH A . K 6 HOH 75 84 84 HOH HOH A . K 6 HOH 76 85 85 HOH HOH A . K 6 HOH 77 86 86 HOH HOH A . K 6 HOH 78 87 87 HOH HOH A . K 6 HOH 79 88 88 HOH HOH A . K 6 HOH 80 89 89 HOH HOH A . K 6 HOH 81 90 90 HOH HOH A . K 6 HOH 82 91 91 HOH HOH A . K 6 HOH 83 92 92 HOH HOH A . K 6 HOH 84 94 94 HOH HOH A . K 6 HOH 85 95 95 HOH HOH A . K 6 HOH 86 96 96 HOH HOH A . K 6 HOH 87 97 97 HOH HOH A . K 6 HOH 88 98 98 HOH HOH A . K 6 HOH 89 100 100 HOH HOH A . K 6 HOH 90 101 101 HOH HOH A . K 6 HOH 91 102 102 HOH HOH A . K 6 HOH 92 103 103 HOH HOH A . K 6 HOH 93 104 104 HOH HOH A . K 6 HOH 94 105 105 HOH HOH A . K 6 HOH 95 370 1 HOH HOH A . K 6 HOH 96 371 2 HOH HOH A . K 6 HOH 97 372 3 HOH HOH A . K 6 HOH 98 373 4 HOH HOH A . K 6 HOH 99 374 6 HOH HOH A . K 6 HOH 100 375 106 HOH HOH A . K 6 HOH 101 376 108 HOH HOH A . K 6 HOH 102 377 109 HOH HOH A . K 6 HOH 103 378 110 HOH HOH A . K 6 HOH 104 379 111 HOH HOH A . K 6 HOH 105 380 112 HOH HOH A . K 6 HOH 106 381 113 HOH HOH A . K 6 HOH 107 382 114 HOH HOH A . K 6 HOH 108 383 115 HOH HOH A . K 6 HOH 109 384 116 HOH HOH A . K 6 HOH 110 385 117 HOH HOH A . K 6 HOH 111 386 118 HOH HOH A . K 6 HOH 112 387 120 HOH HOH A . K 6 HOH 113 388 121 HOH HOH A . K 6 HOH 114 389 122 HOH HOH A . K 6 HOH 115 390 123 HOH HOH A . K 6 HOH 116 391 124 HOH HOH A . K 6 HOH 117 392 125 HOH HOH A . K 6 HOH 118 393 126 HOH HOH A . K 6 HOH 119 394 127 HOH HOH A . K 6 HOH 120 395 128 HOH HOH A . K 6 HOH 121 396 129 HOH HOH A . K 6 HOH 122 397 130 HOH HOH A . K 6 HOH 123 398 131 HOH HOH A . K 6 HOH 124 399 132 HOH HOH A . K 6 HOH 125 400 133 HOH HOH A . K 6 HOH 126 401 135 HOH HOH A . K 6 HOH 127 402 136 HOH HOH A . K 6 HOH 128 403 137 HOH HOH A . K 6 HOH 129 404 138 HOH HOH A . K 6 HOH 130 405 139 HOH HOH A . K 6 HOH 131 406 140 HOH HOH A . K 6 HOH 132 407 141 HOH HOH A . K 6 HOH 133 408 142 HOH HOH A . K 6 HOH 134 409 144 HOH HOH A . K 6 HOH 135 410 145 HOH HOH A . K 6 HOH 136 411 146 HOH HOH A . K 6 HOH 137 412 147 HOH HOH A . K 6 HOH 138 413 148 HOH HOH A . K 6 HOH 139 414 149 HOH HOH A . K 6 HOH 140 415 150 HOH HOH A . K 6 HOH 141 416 151 HOH HOH A . K 6 HOH 142 417 152 HOH HOH A . K 6 HOH 143 418 153 HOH HOH A . K 6 HOH 144 419 154 HOH HOH A . K 6 HOH 145 420 155 HOH HOH A . K 6 HOH 146 421 156 HOH HOH A . K 6 HOH 147 422 157 HOH HOH A . K 6 HOH 148 423 158 HOH HOH A . K 6 HOH 149 424 159 HOH HOH A . K 6 HOH 150 425 160 HOH HOH A . K 6 HOH 151 426 161 HOH HOH A . K 6 HOH 152 427 162 HOH HOH A . K 6 HOH 153 428 163 HOH HOH A . K 6 HOH 154 429 164 HOH HOH A . K 6 HOH 155 430 165 HOH HOH A . K 6 HOH 156 431 166 HOH HOH A . K 6 HOH 157 432 167 HOH HOH A . K 6 HOH 158 433 168 HOH HOH A . K 6 HOH 159 434 169 HOH HOH A . K 6 HOH 160 435 170 HOH HOH A . K 6 HOH 161 436 171 HOH HOH A . K 6 HOH 162 437 172 HOH HOH A . K 6 HOH 163 438 173 HOH HOH A . K 6 HOH 164 439 175 HOH HOH A . K 6 HOH 165 440 176 HOH HOH A . K 6 HOH 166 441 177 HOH HOH A . K 6 HOH 167 442 178 HOH HOH A . K 6 HOH 168 443 179 HOH HOH A . K 6 HOH 169 444 180 HOH HOH A . K 6 HOH 170 445 181 HOH HOH A . K 6 HOH 171 446 182 HOH HOH A . K 6 HOH 172 447 183 HOH HOH A . K 6 HOH 173 448 184 HOH HOH A . K 6 HOH 174 449 185 HOH HOH A . K 6 HOH 175 450 186 HOH HOH A . K 6 HOH 176 451 187 HOH HOH A . K 6 HOH 177 452 188 HOH HOH A . K 6 HOH 178 453 189 HOH HOH A . K 6 HOH 179 454 190 HOH HOH A . K 6 HOH 180 455 192 HOH HOH A . K 6 HOH 181 456 193 HOH HOH A . K 6 HOH 182 457 195 HOH HOH A . K 6 HOH 183 458 196 HOH HOH A . K 6 HOH 184 459 197 HOH HOH A . K 6 HOH 185 460 198 HOH HOH A . K 6 HOH 186 461 199 HOH HOH A . K 6 HOH 187 462 201 HOH HOH A . K 6 HOH 188 463 203 HOH HOH A . K 6 HOH 189 464 204 HOH HOH A . K 6 HOH 190 465 205 HOH HOH A . K 6 HOH 191 466 206 HOH HOH A . K 6 HOH 192 467 207 HOH HOH A . K 6 HOH 193 468 208 HOH HOH A . K 6 HOH 194 469 209 HOH HOH A . K 6 HOH 195 470 210 HOH HOH A . K 6 HOH 196 471 211 HOH HOH A . K 6 HOH 197 472 212 HOH HOH A . K 6 HOH 198 473 191 HOH HOH A . K 6 HOH 199 474 214 HOH HOH A . K 6 HOH 200 475 215 HOH HOH A . K 6 HOH 201 476 216 HOH HOH A . K 6 HOH 202 477 217 HOH HOH A . K 6 HOH 203 478 218 HOH HOH A . K 6 HOH 204 479 219 HOH HOH A . K 6 HOH 205 480 220 HOH HOH A . K 6 HOH 206 481 222 HOH HOH A . K 6 HOH 207 482 223 HOH HOH A . K 6 HOH 208 483 224 HOH HOH A . K 6 HOH 209 484 225 HOH HOH A . K 6 HOH 210 485 226 HOH HOH A . K 6 HOH 211 486 227 HOH HOH A . K 6 HOH 212 487 228 HOH HOH A . K 6 HOH 213 488 229 HOH HOH A . K 6 HOH 214 489 231 HOH HOH A . K 6 HOH 215 490 232 HOH HOH A . K 6 HOH 216 491 233 HOH HOH A . K 6 HOH 217 492 238 HOH HOH A . K 6 HOH 218 493 239 HOH HOH A . K 6 HOH 219 494 240 HOH HOH A . K 6 HOH 220 495 241 HOH HOH A . K 6 HOH 221 496 242 HOH HOH A . K 6 HOH 222 497 245 HOH HOH A . K 6 HOH 223 498 246 HOH HOH A . K 6 HOH 224 499 247 HOH HOH A . K 6 HOH 225 500 248 HOH HOH A . K 6 HOH 226 501 250 HOH HOH A . K 6 HOH 227 502 251 HOH HOH A . K 6 HOH 228 503 253 HOH HOH A . K 6 HOH 229 504 254 HOH HOH A . L 6 HOH 1 39 39 HOH HOH B . L 6 HOH 2 62 62 HOH HOH B . L 6 HOH 3 78 78 HOH HOH B . L 6 HOH 4 99 99 HOH HOH B . L 6 HOH 5 107 107 HOH HOH B . L 6 HOH 6 134 134 HOH HOH B . L 6 HOH 7 174 174 HOH HOH B . L 6 HOH 8 473 213 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id MLY _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id MLY _pdbx_struct_mod_residue.auth_seq_id 189 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2880 ? 1 MORE -24 ? 1 'SSA (A^2)' 11860 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 459 ? K HOH . 2 1 A HOH 464 ? K HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-11-14 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2021-10-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_dist_value' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 12 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 13 5 'Structure model' '_struct_ref_seq_dif.details' 14 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3M59 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 36.160 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 36.160 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method mr # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 152 ? ? -139.84 -38.16 2 1 ARG A 152 ? ? -137.30 -43.10 3 1 ASN A 188 ? ? -116.66 52.97 4 1 ASP A 194 ? ? -157.08 53.05 5 1 THR A 197 ? ? -119.17 -167.92 6 1 SER A 202 ? ? -173.67 144.16 7 1 CYS A 288 ? ? -141.85 18.39 8 1 LYS B 187 ? ? -92.54 50.53 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 116 ? CG ? A HIS 11 CG 2 1 Y 1 A HIS 116 ? ND1 ? A HIS 11 ND1 3 1 Y 1 A HIS 116 ? CD2 ? A HIS 11 CD2 4 1 Y 1 A HIS 116 ? CE1 ? A HIS 11 CE1 5 1 Y 1 A HIS 116 ? NE2 ? A HIS 11 NE2 6 1 Y 1 A ASP 136 ? CG ? A ASP 31 CG 7 1 Y 1 A ASP 136 ? OD1 ? A ASP 31 OD1 8 1 Y 1 A ASP 136 ? OD2 ? A ASP 31 OD2 9 1 Y 1 A GLU 166 ? CG ? A GLU 61 CG 10 1 Y 1 A GLU 166 ? CD ? A GLU 61 CD 11 1 Y 1 A GLU 166 ? OE1 ? A GLU 61 OE1 12 1 Y 1 A GLU 166 ? OE2 ? A GLU 61 OE2 13 1 Y 1 A GLU 214 ? CG ? A GLU 109 CG 14 1 Y 1 A GLU 214 ? CD ? A GLU 109 CD 15 1 Y 1 A GLU 214 ? OE1 ? A GLU 109 OE1 16 1 Y 1 A GLU 214 ? OE2 ? A GLU 109 OE2 17 1 Y 1 A GLN 253 ? CG ? A GLN 148 CG 18 1 Y 1 A GLN 253 ? CD ? A GLN 148 CD 19 1 Y 1 A GLN 253 ? OE1 ? A GLN 148 OE1 20 1 Y 1 A GLN 253 ? NE2 ? A GLN 148 NE2 21 1 Y 1 A GLU 272 ? CG ? A GLU 167 CG 22 1 Y 1 A GLU 272 ? CD ? A GLU 167 CD 23 1 Y 1 A GLU 272 ? OE1 ? A GLU 167 OE1 24 1 Y 1 A GLU 272 ? OE2 ? A GLU 167 OE2 25 1 Y 1 A GLU 326 ? CG ? A GLU 221 CG 26 1 Y 1 A GLU 326 ? CD ? A GLU 221 CD 27 1 Y 1 A GLU 326 ? OE1 ? A GLU 221 OE1 28 1 Y 1 A GLU 326 ? OE2 ? A GLU 221 OE2 29 1 Y 1 A SER 340 ? OG ? A SER 235 OG 30 1 Y 1 B LYS 192 ? CG ? B LYS 8 CG 31 1 Y 1 B LYS 192 ? CD ? B LYS 8 CD 32 1 Y 1 B LYS 192 ? CE ? B LYS 8 CE 33 1 Y 1 B LYS 192 ? NZ ? B LYS 8 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 106 ? A GLY 1 2 1 Y 1 A ALA 107 ? A ALA 2 3 1 Y 1 A MET 108 ? A MET 3 4 1 Y 1 A GLY 109 ? A GLY 4 5 1 Y 1 A TYR 110 ? A TYR 5 6 1 Y 1 A LYS 111 ? A LYS 6 7 1 Y 1 A ASP 112 ? A ASP 7 8 1 Y 1 A ASN 113 ? A ASN 8 9 1 Y 1 A ILE 114 ? A ILE 9 10 1 Y 1 A ARG 115 ? A ARG 10 11 1 Y 1 A PRO 342 ? A PRO 237 12 1 Y 1 A GLY 343 ? A GLY 238 13 1 Y 1 A LYS 344 ? A LYS 239 14 1 Y 1 A SER 345 ? A SER 240 15 1 Y 1 A GLN 365 ? A GLN 260 16 1 Y 1 A LYS 366 ? A LYS 261 17 1 Y 1 B THR 194 ? B THR 10 18 1 Y 1 B LEU 195 ? B LEU 11 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 S-ADENOSYL-L-HOMOCYSTEINE SAH 4 'COBALT (II) ION' CO 5 GLYCEROL GOL 6 water HOH #