data_3M5F # _entry.id 3M5F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3M5F RCSB RCSB058130 WWPDB D_1000058130 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2011-06-22 _pdbx_database_PDB_obs_spr.pdb_id 3S4L _pdbx_database_PDB_obs_spr.replace_pdb_id 3M5F _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3M5F _pdbx_database_status.recvd_initial_deposition_date 2010-03-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Petit, P.' 1 'Brown, G.' 2 'Savchenko, A.' 3 'Edwards, A.' 4 'Osipiuk, J.' 5 'Joachimiak, A.' 6 'Yakunin, A.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Crystal structure and enzymatic characterization of mj0384, a cas3 protein from methanocaldococcus jannaschii' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Petit, P.' 1 primary 'Brown, G.' 2 primary 'Edwards, A.' 3 primary 'Savchenko, A.' 4 primary 'Joachimiak, A.' 5 primary 'Yakunin, A.' 6 # _cell.entry_id 3M5F _cell.length_a 59.073 _cell.length_b 59.073 _cell.length_c 162.879 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3M5F _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Metal dependent phosphohydrolase' 28452.713 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MILGEIMEVLAFKNQSLIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIEKVDEFMKILIKLHDIGKASKIYQRAII NDQEKLMGFRHELVSAYYTYHILLKKFGDKNLAFIGALTVMLHHEPIIMGQIRNLKKKELTAEVVLDKLKKFDGMIEDFE DLIKKLIGYSIGDIIKNDSNKDDIIRFVIEMSVRARHTPNSEKLRFIVGTLLLPLVMCDYKGAESREGKAPKFAEVLEVE SYVI ; _entity_poly.pdbx_seq_one_letter_code_can ;MILGEIMEVLAFKNQSLIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIEKVDEFMKILIKLHDIGKASKIYQRAII NDQEKLMGFRHELVSAYYTYHILLKKFGDKNLAFIGALTVMLHHEPIIMGQIRNLKKKELTAEVVLDKLKKFDGMIEDFE DLIKKLIGYSIGDIIKNDSNKDDIIRFVIEMSVRARHTPNSEKLRFIVGTLLLPLVMCDYKGAESREGKAPKFAEVLEVE SYVI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 LEU n 1 4 GLY n 1 5 GLU n 1 6 ILE n 1 7 MET n 1 8 GLU n 1 9 VAL n 1 10 LEU n 1 11 ALA n 1 12 PHE n 1 13 LYS n 1 14 ASN n 1 15 GLN n 1 16 SER n 1 17 LEU n 1 18 ILE n 1 19 ASP n 1 20 HIS n 1 21 VAL n 1 22 ASN n 1 23 ASP n 1 24 MET n 1 25 VAL n 1 26 LYS n 1 27 TYR n 1 28 TRP n 1 29 GLU n 1 30 ARG n 1 31 ILE n 1 32 LYS n 1 33 TYR n 1 34 ARG n 1 35 TYR n 1 36 LEU n 1 37 LYS n 1 38 THR n 1 39 ILE n 1 40 LYS n 1 41 ARG n 1 42 ALA n 1 43 LEU n 1 44 GLU n 1 45 ALA n 1 46 LEU n 1 47 ASN n 1 48 ILE n 1 49 LYS n 1 50 LEU n 1 51 ASP n 1 52 ILE n 1 53 GLU n 1 54 LYS n 1 55 VAL n 1 56 ASP n 1 57 GLU n 1 58 PHE n 1 59 MET n 1 60 LYS n 1 61 ILE n 1 62 LEU n 1 63 ILE n 1 64 LYS n 1 65 LEU n 1 66 HIS n 1 67 ASP n 1 68 ILE n 1 69 GLY n 1 70 LYS n 1 71 ALA n 1 72 SER n 1 73 LYS n 1 74 ILE n 1 75 TYR n 1 76 GLN n 1 77 ARG n 1 78 ALA n 1 79 ILE n 1 80 ILE n 1 81 ASN n 1 82 ASP n 1 83 GLN n 1 84 GLU n 1 85 LYS n 1 86 LEU n 1 87 MET n 1 88 GLY n 1 89 PHE n 1 90 ARG n 1 91 HIS n 1 92 GLU n 1 93 LEU n 1 94 VAL n 1 95 SER n 1 96 ALA n 1 97 TYR n 1 98 TYR n 1 99 THR n 1 100 TYR n 1 101 HIS n 1 102 ILE n 1 103 LEU n 1 104 LEU n 1 105 LYS n 1 106 LYS n 1 107 PHE n 1 108 GLY n 1 109 ASP n 1 110 LYS n 1 111 ASN n 1 112 LEU n 1 113 ALA n 1 114 PHE n 1 115 ILE n 1 116 GLY n 1 117 ALA n 1 118 LEU n 1 119 THR n 1 120 VAL n 1 121 MET n 1 122 LEU n 1 123 HIS n 1 124 HIS n 1 125 GLU n 1 126 PRO n 1 127 ILE n 1 128 ILE n 1 129 MET n 1 130 GLY n 1 131 GLN n 1 132 ILE n 1 133 ARG n 1 134 ASN n 1 135 LEU n 1 136 LYS n 1 137 LYS n 1 138 LYS n 1 139 GLU n 1 140 LEU n 1 141 THR n 1 142 ALA n 1 143 GLU n 1 144 VAL n 1 145 VAL n 1 146 LEU n 1 147 ASP n 1 148 LYS n 1 149 LEU n 1 150 LYS n 1 151 LYS n 1 152 PHE n 1 153 ASP n 1 154 GLY n 1 155 MET n 1 156 ILE n 1 157 GLU n 1 158 ASP n 1 159 PHE n 1 160 GLU n 1 161 ASP n 1 162 LEU n 1 163 ILE n 1 164 LYS n 1 165 LYS n 1 166 LEU n 1 167 ILE n 1 168 GLY n 1 169 TYR n 1 170 SER n 1 171 ILE n 1 172 GLY n 1 173 ASP n 1 174 ILE n 1 175 ILE n 1 176 LYS n 1 177 ASN n 1 178 ASP n 1 179 SER n 1 180 ASN n 1 181 LYS n 1 182 ASP n 1 183 ASP n 1 184 ILE n 1 185 ILE n 1 186 ARG n 1 187 PHE n 1 188 VAL n 1 189 ILE n 1 190 GLU n 1 191 MET n 1 192 SER n 1 193 VAL n 1 194 ARG n 1 195 ALA n 1 196 ARG n 1 197 HIS n 1 198 THR n 1 199 PRO n 1 200 ASN n 1 201 SER n 1 202 GLU n 1 203 LYS n 1 204 LEU n 1 205 ARG n 1 206 PHE n 1 207 ILE n 1 208 VAL n 1 209 GLY n 1 210 THR n 1 211 LEU n 1 212 LEU n 1 213 LEU n 1 214 PRO n 1 215 LEU n 1 216 VAL n 1 217 MET n 1 218 CYS n 1 219 ASP n 1 220 TYR n 1 221 LYS n 1 222 GLY n 1 223 ALA n 1 224 GLU n 1 225 SER n 1 226 ARG n 1 227 GLU n 1 228 GLY n 1 229 LYS n 1 230 ALA n 1 231 PRO n 1 232 LYS n 1 233 PHE n 1 234 ALA n 1 235 GLU n 1 236 VAL n 1 237 LEU n 1 238 GLU n 1 239 VAL n 1 240 GLU n 1 241 SER n 1 242 TYR n 1 243 VAL n 1 244 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MJ0384, Y384_METJA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name p15-TVL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y384_METJA _struct_ref.pdbx_db_accession Q57829 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MILGEIMEVLAFKNQSLIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIEKVDEFMKILIKLHDIGKASKIYQRAII NDQEKLMGFRHELVSAYYTYHILLKKFGDKNLAFIGALTVMLHHEPIIMGQIRNLKKKELTAEVVLDKLKKFDGMIEDFE DLIKKLIGYSIGDIIKNDSNKDDIIRFVIEMSVRARHTPNSEKLRFIVGTLLLPLVMCDYKGAESREGKAPKFAEVLEVE SYVI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3M5F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 244 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q57829 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 244 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 244 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3M5F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'PEG 5000 MME 25%, (NH4)2 SO4 0.2M, SPG 0.1M, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-02-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97941 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97941 # _reflns.entry_id 3M5F _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.54 _reflns.d_resolution_high 2.30 _reflns.number_obs 13603 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value 0.04 _reflns.pdbx_netI_over_sigmaI 38.3 _reflns.B_iso_Wilson_estimate 44.2 _reflns.pdbx_redundancy 13.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value 0.33 _reflns_shell.meanI_over_sigI_obs 8.3 _reflns_shell.pdbx_redundancy 14.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1929 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3M5F _refine.ls_number_reflns_obs 13321 _refine.ls_number_reflns_all 13978 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.02 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.53 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 98.28 _refine.ls_R_factor_obs 0.2321 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2306 _refine.ls_R_factor_R_free 0.2600 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.93 _refine.ls_number_reflns_R_free 657 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 3.9541 _refine.aniso_B[2][2] 3.9541 _refine.aniso_B[3][3] -7.9083 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.343 _refine.solvent_model_param_bsol 56.594 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.34 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error 25.01 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1591 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1623 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 29.53 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 1616 'X-RAY DIFFRACTION' ? f_angle_d 1.271 ? ? 2167 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.425 ? ? 609 'X-RAY DIFFRACTION' ? f_chiral_restr 0.088 ? ? 252 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 264 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3000 2.4775 2384 0.2627 95.00 0.3524 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.4775 2.7267 2438 0.2417 98.00 0.2688 . . 132 . . . . 'X-RAY DIFFRACTION' . 2.7267 3.1209 2541 0.2485 99.00 0.2969 . . 125 . . . . 'X-RAY DIFFRACTION' . 3.1209 3.9305 2565 0.2206 100.00 0.2747 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.9305 29.5389 2736 0.2137 99.00 0.2090 . . 123 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3M5F _struct.title 'Structure of MJ0384, a CAS3 protein from Methanocaldococcus jannaschii' _struct.pdbx_descriptor 'Metal dependent phosphohydrolase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3M5F _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;CAS3, PROKARYOTIC IMMUNE SYSTEM, HD-MOTIF, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 17 ? GLU A 44 ? LEU A 17 GLU A 44 1 ? 28 HELX_P HELX_P2 2 ALA A 45 ? ASN A 47 ? ALA A 45 ASN A 47 5 ? 3 HELX_P HELX_P3 3 ASP A 51 ? HIS A 66 ? ASP A 51 HIS A 66 1 ? 16 HELX_P HELX_P4 4 ASP A 67 ? ALA A 71 ? ASP A 67 ALA A 71 5 ? 5 HELX_P HELX_P5 5 SER A 72 ? ASN A 81 ? SER A 72 ASN A 81 1 ? 10 HELX_P HELX_P6 6 ARG A 90 ? GLY A 108 ? ARG A 90 GLY A 108 1 ? 19 HELX_P HELX_P7 7 ASP A 109 ? LEU A 122 ? ASP A 109 LEU A 122 1 ? 14 HELX_P HELX_P8 8 THR A 141 ? LYS A 150 ? THR A 141 LYS A 150 1 ? 10 HELX_P HELX_P9 9 ASP A 158 ? GLY A 168 ? ASP A 158 GLY A 168 1 ? 11 HELX_P HELX_P10 10 ASN A 180 ? THR A 198 ? ASN A 180 THR A 198 1 ? 19 HELX_P HELX_P11 11 GLU A 202 ? LEU A 213 ? GLU A 202 LEU A 213 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id metalc1 _struct_conn.conn_type_id metalc _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 67 _struct_conn.ptnr1_label_atom_id OD2 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id CA _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 67 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.207 _struct_conn.pdbx_value_order ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 213 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 213 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 214 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 214 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -10.03 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 10 ? PHE A 12 ? LEU A 10 PHE A 12 A 2 GLN A 15 ? SER A 16 ? GLN A 15 SER A 16 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 11 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 11 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLN _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 15 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLN _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 15 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 67 ? ASP A 67 . ? 1_555 ? 2 AC1 4 HIS A 91 ? HIS A 91 . ? 1_555 ? 3 AC1 4 HIS A 123 ? HIS A 123 . ? 1_555 ? 4 AC1 4 HIS A 124 ? HIS A 124 . ? 1_555 ? # _database_PDB_matrix.entry_id 3M5F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3M5F _atom_sites.fract_transf_matrix[1][1] 0.016928 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016928 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006140 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ILE 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 HIS 101 101 101 HIS HIS A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 HIS 123 123 123 HIS HIS A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 MET 129 129 ? ? ? A . n A 1 130 GLY 130 130 ? ? ? A . n A 1 131 GLN 131 131 ? ? ? A . n A 1 132 ILE 132 132 ? ? ? A . n A 1 133 ARG 133 133 ? ? ? A . n A 1 134 ASN 134 134 ? ? ? A . n A 1 135 LEU 135 135 ? ? ? A . n A 1 136 LYS 136 136 ? ? ? A . n A 1 137 LYS 137 137 ? ? ? A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 MET 155 155 155 MET MET A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 GLU 160 160 160 GLU GLU A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 SER 170 170 170 SER SER A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 ILE 175 175 ? ? ? A . n A 1 176 LYS 176 176 ? ? ? A . n A 1 177 ASN 177 177 ? ? ? A . n A 1 178 ASP 178 178 ? ? ? A . n A 1 179 SER 179 179 ? ? ? A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 PHE 187 187 187 PHE PHE A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 MET 191 191 191 MET MET A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 HIS 197 197 197 HIS HIS A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 PRO 199 199 199 PRO PRO A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 GLU 202 202 202 GLU GLU A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 ARG 205 205 205 ARG ARG A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 ILE 207 207 207 ILE ALA A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 THR 210 210 210 THR THR A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 PRO 214 214 214 PRO PRO A . n A 1 215 LEU 215 215 ? ? ? A . n A 1 216 VAL 216 216 ? ? ? A . n A 1 217 MET 217 217 ? ? ? A . n A 1 218 CYS 218 218 ? ? ? A . n A 1 219 ASP 219 219 ? ? ? A . n A 1 220 TYR 220 220 ? ? ? A . n A 1 221 LYS 221 221 ? ? ? A . n A 1 222 GLY 222 222 ? ? ? A . n A 1 223 ALA 223 223 ? ? ? A . n A 1 224 GLU 224 224 ? ? ? A . n A 1 225 SER 225 225 ? ? ? A . n A 1 226 ARG 226 226 ? ? ? A . n A 1 227 GLU 227 227 ? ? ? A . n A 1 228 GLY 228 228 ? ? ? A . n A 1 229 LYS 229 229 ? ? ? A . n A 1 230 ALA 230 230 ? ? ? A . n A 1 231 PRO 231 231 ? ? ? A . n A 1 232 LYS 232 232 ? ? ? A . n A 1 233 PHE 233 233 ? ? ? A . n A 1 234 ALA 234 234 ? ? ? A . n A 1 235 GLU 235 235 ? ? ? A . n A 1 236 VAL 236 236 ? ? ? A . n A 1 237 LEU 237 237 ? ? ? A . n A 1 238 GLU 238 238 ? ? ? A . n A 1 239 VAL 239 239 ? ? ? A . n A 1 240 GLU 240 240 ? ? ? A . n A 1 241 SER 241 241 ? ? ? A . n A 1 242 TYR 242 242 ? ? ? A . n A 1 243 VAL 243 243 ? ? ? A . n A 1 244 ILE 244 244 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 500 500 CA CA A . C 2 CA 1 501 501 CA CA A . D 3 HOH 1 245 1 HOH HOH A . D 3 HOH 2 246 2 HOH HOH A . D 3 HOH 3 247 3 HOH HOH A . D 3 HOH 4 248 4 HOH HOH A . D 3 HOH 5 249 5 HOH HOH A . D 3 HOH 6 250 6 HOH HOH A . D 3 HOH 7 251 7 HOH HOH A . D 3 HOH 8 252 8 HOH HOH A . D 3 HOH 9 253 9 HOH HOH A . D 3 HOH 10 254 10 HOH HOH A . D 3 HOH 11 255 11 HOH HOH A . D 3 HOH 12 256 12 HOH HOH A . D 3 HOH 13 257 13 HOH HOH A . D 3 HOH 14 258 14 HOH HOH A . D 3 HOH 15 259 15 HOH HOH A . D 3 HOH 16 260 16 HOH HOH A . D 3 HOH 17 261 17 HOH HOH A . D 3 HOH 18 262 18 HOH HOH A . D 3 HOH 19 263 19 HOH HOH A . D 3 HOH 20 264 20 HOH HOH A . D 3 HOH 21 265 21 HOH HOH A . D 3 HOH 22 266 22 HOH HOH A . D 3 HOH 23 267 23 HOH HOH A . D 3 HOH 24 268 24 HOH HOH A . D 3 HOH 25 269 25 HOH HOH A . D 3 HOH 26 270 26 HOH HOH A . D 3 HOH 27 271 27 HOH HOH A . D 3 HOH 28 272 28 HOH HOH A . D 3 HOH 29 273 29 HOH HOH A . D 3 HOH 30 274 30 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-14 2 'Structure model' 1 1 2011-06-22 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 48.7756 _pdbx_refine_tls.origin_y 24.2544 _pdbx_refine_tls.origin_z 80.0826 _pdbx_refine_tls.T[1][1] 0.0656 _pdbx_refine_tls.T[2][2] 0.1184 _pdbx_refine_tls.T[3][3] 0.1403 _pdbx_refine_tls.T[1][2] -0.0064 _pdbx_refine_tls.T[1][3] -0.0338 _pdbx_refine_tls.T[2][3] 0.0379 _pdbx_refine_tls.L[1][1] 2.6865 _pdbx_refine_tls.L[2][2] 3.5440 _pdbx_refine_tls.L[3][3] 5.1591 _pdbx_refine_tls.L[1][2] 1.6473 _pdbx_refine_tls.L[1][3] -2.3051 _pdbx_refine_tls.L[2][3] -2.8845 _pdbx_refine_tls.S[1][1] -0.1773 _pdbx_refine_tls.S[1][2] 0.2833 _pdbx_refine_tls.S[1][3] 0.0190 _pdbx_refine_tls.S[2][1] 0.0119 _pdbx_refine_tls.S[2][2] 0.3578 _pdbx_refine_tls.S[2][3] 0.0933 _pdbx_refine_tls.S[3][1] 0.1513 _pdbx_refine_tls.S[3][2] -0.3205 _pdbx_refine_tls.S[3][3] -0.0004 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SOLVE 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.6_289)' ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 SOLVE phasing . ? 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ILE _pdbx_validate_symm_contact.auth_seq_id_1 127 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ILE _pdbx_validate_symm_contact.auth_seq_id_2 127 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_556 _pdbx_validate_symm_contact.dist 2.01 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 82 ? ? -91.79 39.13 2 1 MET A 87 ? ? -106.82 69.17 3 1 ILE A 171 ? ? -68.73 1.72 4 1 SER A 201 ? ? -100.03 48.98 5 1 GLU A 202 ? ? -5.45 72.01 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 83 ? CG ? A GLN 83 CG 2 1 Y 1 A GLN 83 ? CD ? A GLN 83 CD 3 1 Y 1 A GLN 83 ? OE1 ? A GLN 83 OE1 4 1 Y 1 A GLN 83 ? NE2 ? A GLN 83 NE2 5 1 Y 1 A LYS 85 ? CG ? A LYS 85 CG 6 1 Y 1 A LYS 85 ? CD ? A LYS 85 CD 7 1 Y 1 A LYS 85 ? CE ? A LYS 85 CE 8 1 Y 1 A LYS 85 ? NZ ? A LYS 85 NZ 9 1 Y 1 A ARG 205 ? NE ? A ARG 205 NE 10 1 Y 1 A ARG 205 ? CZ ? A ARG 205 CZ 11 1 Y 1 A ARG 205 ? NH1 ? A ARG 205 NH1 12 1 Y 1 A ARG 205 ? NH2 ? A ARG 205 NH2 13 1 Y 1 A PHE 206 ? CG ? A PHE 206 CG 14 1 Y 1 A PHE 206 ? CD1 ? A PHE 206 CD1 15 1 Y 1 A PHE 206 ? CD2 ? A PHE 206 CD2 16 1 Y 1 A PHE 206 ? CE1 ? A PHE 206 CE1 17 1 Y 1 A PHE 206 ? CE2 ? A PHE 206 CE2 18 1 Y 1 A PHE 206 ? CZ ? A PHE 206 CZ 19 1 Y 1 A ILE 207 ? CG1 ? A ILE 207 CG1 20 1 Y 1 A ILE 207 ? CG2 ? A ILE 207 CG2 21 1 Y 1 A ILE 207 ? CD1 ? A ILE 207 CD1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ILE 2 ? A ILE 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A MET 129 ? A MET 129 7 1 Y 1 A GLY 130 ? A GLY 130 8 1 Y 1 A GLN 131 ? A GLN 131 9 1 Y 1 A ILE 132 ? A ILE 132 10 1 Y 1 A ARG 133 ? A ARG 133 11 1 Y 1 A ASN 134 ? A ASN 134 12 1 Y 1 A LEU 135 ? A LEU 135 13 1 Y 1 A LYS 136 ? A LYS 136 14 1 Y 1 A LYS 137 ? A LYS 137 15 1 Y 1 A ILE 175 ? A ILE 175 16 1 Y 1 A LYS 176 ? A LYS 176 17 1 Y 1 A ASN 177 ? A ASN 177 18 1 Y 1 A ASP 178 ? A ASP 178 19 1 Y 1 A SER 179 ? A SER 179 20 1 Y 1 A LEU 215 ? A LEU 215 21 1 Y 1 A VAL 216 ? A VAL 216 22 1 Y 1 A MET 217 ? A MET 217 23 1 Y 1 A CYS 218 ? A CYS 218 24 1 Y 1 A ASP 219 ? A ASP 219 25 1 Y 1 A TYR 220 ? A TYR 220 26 1 Y 1 A LYS 221 ? A LYS 221 27 1 Y 1 A GLY 222 ? A GLY 222 28 1 Y 1 A ALA 223 ? A ALA 223 29 1 Y 1 A GLU 224 ? A GLU 224 30 1 Y 1 A SER 225 ? A SER 225 31 1 Y 1 A ARG 226 ? A ARG 226 32 1 Y 1 A GLU 227 ? A GLU 227 33 1 Y 1 A GLY 228 ? A GLY 228 34 1 Y 1 A LYS 229 ? A LYS 229 35 1 Y 1 A ALA 230 ? A ALA 230 36 1 Y 1 A PRO 231 ? A PRO 231 37 1 Y 1 A LYS 232 ? A LYS 232 38 1 Y 1 A PHE 233 ? A PHE 233 39 1 Y 1 A ALA 234 ? A ALA 234 40 1 Y 1 A GLU 235 ? A GLU 235 41 1 Y 1 A VAL 236 ? A VAL 236 42 1 Y 1 A LEU 237 ? A LEU 237 43 1 Y 1 A GLU 238 ? A GLU 238 44 1 Y 1 A VAL 239 ? A VAL 239 45 1 Y 1 A GLU 240 ? A GLU 240 46 1 Y 1 A SER 241 ? A SER 241 47 1 Y 1 A TYR 242 ? A TYR 242 48 1 Y 1 A VAL 243 ? A VAL 243 49 1 Y 1 A ILE 244 ? A ILE 244 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH #