HEADER TRANSPORT PROTEIN 15-MAR-10 3M6E TITLE F80A MUTANT OF THE UREA TRANSPORTER FROM DESULFOVIBRIO VULGARIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UREA TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 STRAIN: HILDENBOROUGH; SOURCE 5 ATCC: 29579 / NCIMB 8303; SOURCE 6 GENE: DVU_1160; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET SUMO KEYWDS MEMBRANE PROTEIN, CHANNEL, UREA TRANSPORT, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, NEW YORK CONSORTIUM ON MEMBRANE KEYWDS 3 PROTEIN STRUCTURE, NYCOMPS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.J.LEVIN,M.ZHOU,NEW YORK CONSORTIUM ON MEMBRANE PROTEIN STRUCTURE AUTHOR 2 (NYCOMPS) REVDAT 4 06-SEP-23 3M6E 1 REMARK REVDAT 3 06-OCT-21 3M6E 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3M6E 1 REMARK REVDAT 1 04-AUG-10 3M6E 0 JRNL AUTH E.J.LEVIN,M.ZHOU JRNL TITL F80A MUTANT OF THE UREA TRANSPORTER FROM DESULFOVIBRIO JRNL TITL 2 VULGARIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 16438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 824 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1170 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.356 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.689 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2544 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3465 ; 1.571 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 5.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;41.261 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;16.186 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.259 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 415 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1876 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1268 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1825 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 88 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 83 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1683 ; 0.576 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2630 ; 0.985 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 987 ; 1.523 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 835 ; 2.325 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): -55.1470 -1.1262 -7.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.4154 T22: -0.0764 REMARK 3 T33: 0.3318 T12: 0.0439 REMARK 3 T13: 0.1749 T23: -0.1621 REMARK 3 L TENSOR REMARK 3 L11: 1.4118 L22: 2.3038 REMARK 3 L33: 1.9312 L12: 0.8984 REMARK 3 L13: -0.3286 L23: 1.5832 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.3228 S13: -0.7711 REMARK 3 S21: 0.0793 S22: -0.1326 S23: 0.5553 REMARK 3 S31: 0.4755 S32: -0.1545 S33: 0.1079 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): -61.2397 14.2348 0.7316 REMARK 3 T TENSOR REMARK 3 T11: -0.0225 T22: -0.2000 REMARK 3 T33: -0.0884 T12: -0.0458 REMARK 3 T13: 0.1050 T23: -0.0834 REMARK 3 L TENSOR REMARK 3 L11: 2.6770 L22: 2.7276 REMARK 3 L33: 1.0361 L12: 0.1610 REMARK 3 L13: 0.8102 L23: 0.3109 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: 0.0735 S13: -0.5548 REMARK 3 S21: -0.0294 S22: -0.1868 S23: 0.2100 REMARK 3 S31: 0.4298 S32: -0.2185 S33: 0.2787 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): -40.5313 7.4664 7.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: -0.0066 REMARK 3 T33: 0.2492 T12: 0.1803 REMARK 3 T13: 0.1038 T23: 0.1819 REMARK 3 L TENSOR REMARK 3 L11: 1.9814 L22: 2.1784 REMARK 3 L33: 2.9712 L12: -0.0275 REMARK 3 L13: -0.8408 L23: 0.6202 REMARK 3 S TENSOR REMARK 3 S11: -0.1988 S12: -0.2174 S13: -0.8741 REMARK 3 S21: 0.4476 S22: -0.1369 S23: -0.6512 REMARK 3 S31: 0.8497 S32: 0.5463 S33: 0.3357 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): -40.8486 19.0236 2.0346 REMARK 3 T TENSOR REMARK 3 T11: -0.1319 T22: -0.0999 REMARK 3 T33: -0.0787 T12: 0.0840 REMARK 3 T13: 0.0837 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 1.7556 L22: 2.4503 REMARK 3 L33: 1.8397 L12: 0.2730 REMARK 3 L13: -0.3319 L23: -0.4582 REMARK 3 S TENSOR REMARK 3 S11: -0.1484 S12: 0.0267 S13: -0.3962 REMARK 3 S21: -0.0786 S22: -0.1608 S23: -0.5421 REMARK 3 S31: 0.3747 S32: 0.4687 S33: 0.3093 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 310 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -39.2828 15.5402 -18.6367 REMARK 3 T TENSOR REMARK 3 T11: 0.3370 T22: 0.3457 REMARK 3 T33: 0.2428 T12: 0.0637 REMARK 3 T13: 0.3759 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 1.4429 L22: 13.3583 REMARK 3 L33: 3.3711 L12: 2.6614 REMARK 3 L13: 0.6821 L23: 2.7028 REMARK 3 S TENSOR REMARK 3 S11: -0.4133 S12: 0.9213 S13: -0.5547 REMARK 3 S21: -1.7291 S22: 0.1800 S23: 0.1076 REMARK 3 S31: 0.2477 S32: 0.1543 S33: 0.2333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3M6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2135 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16528 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.95300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3K3F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 1500, 100 MM NA CACODYLATE, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.26150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.26150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.26150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -273.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -55.27900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 95.74604 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -110.55800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A 165 REMARK 465 LEU A 166 REMARK 465 ALA A 167 REMARK 465 GLY A 335 REMARK 465 SER A 336 REMARK 465 ARG A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 19 CB CYS A 19 SG 0.351 REMARK 500 CYS A 51 CB CYS A 51 SG 0.153 REMARK 500 CYS A 224 CB CYS A 224 SG 0.268 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 15 CA - CB - SG ANGL. DEV. = -11.5 DEGREES REMARK 500 CYS A 19 CA - CB - SG ANGL. DEV. = 19.3 DEGREES REMARK 500 CYS A 224 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 129 -135.93 46.61 REMARK 500 ASP A 192 74.80 -69.54 REMARK 500 ASN A 193 113.41 -167.44 REMARK 500 LEU A 293 -137.16 59.96 REMARK 500 ALA A 322 109.29 -49.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AU A 340 AU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS A 19 SG 145.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 346 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.3782 RELATED DB: TARGETDB DBREF 3M6E A 2 337 UNP Q72CX3 Q72CX3_DESVH 2 337 SEQADV 3M6E SER A -2 UNP Q72CX3 EXPRESSION TAG SEQADV 3M6E GLY A -1 UNP Q72CX3 EXPRESSION TAG SEQADV 3M6E ARG A 0 UNP Q72CX3 EXPRESSION TAG SEQADV 3M6E ALA A 1 UNP Q72CX3 EXPRESSION TAG SEQADV 3M6E ALA A 80 UNP Q72CX3 PHE 80 ENGINEERED MUTATION SEQRES 1 A 340 SER GLY ARG ALA PHE GLY GLU GLN LEU LEU LYS ASN PRO SEQRES 2 A 340 LEU ILE GLU PHE CYS ASP SER VAL CYS ARG GLY CYS GLY SEQRES 3 A 340 GLN VAL MET PHE GLN ASN ASN THR VAL THR GLY LEU LEU SEQRES 4 A 340 PHE PHE ALA GLY ILE PHE TYR ASN SER THR THR LEU GLY SEQRES 5 A 340 VAL CYS ALA VAL LEU GLY THR ALA ALA SER THR LEU THR SEQRES 6 A 340 ALA GLN LEU LEU GLY VAL ASP LYS PRO LEU VAL ARG ALA SEQRES 7 A 340 GLY LEU PHE GLY ALA ASN GLY THR LEU ALA GLY ILE ALA SEQRES 8 A 340 LEU PRO PHE PHE PHE ASN TYR GLU PRO ALA MET LEU GLY SEQRES 9 A 340 TYR VAL ALA LEU ASN GLY ALA PHE THR THR ILE ILE MET SEQRES 10 A 340 ALA SER LEU LEU ASN PHE LEU GLY LYS TRP GLY VAL PRO SEQRES 11 A 340 ALA LEU THR ALA PRO PHE VAL LEU ALA THR TRP LEU LEU SEQRES 12 A 340 MET PHE GLY VAL TYR LYS LEU SER LEU PHE HIS PRO GLY SEQRES 13 A 340 ALA LEU ILE ALA PRO ALA LEU PRO SER VAL ALA GLY LEU SEQRES 14 A 340 ALA ASP MET GLY THR VAL THR GLY ARG THR PHE MET GLU SEQRES 15 A 340 GLY LEU PHE LYS GLY VAL GLY GLU VAL MET PHE GLN ASP SEQRES 16 A 340 ASN ILE VAL THR GLY VAL ILE PHE VAL VAL ALA ILE LEU SEQRES 17 A 340 VAL ASN SER ARG ILE SER ALA LEU PHE ALA VAL ILE GLY SEQRES 18 A 340 SER LEU VAL GLY LEU CYS THR ALA LEU ILE MET HIS SER SEQRES 19 A 340 PRO GLU THR PRO VAL ARG LEU GLY LEU TYR GLY PHE ASN SEQRES 20 A 340 SER VAL LEU CYS GLY ILE ALA MET GLY GLY ILE PHE PHE SEQRES 21 A 340 TYR LEU ASN ILE ARG THR PHE LEU TYR ALA LEU GLY CYS SEQRES 22 A 340 MET VAL LEU GLY ALA ILE ALA THR GLY ALA PHE SER VAL SEQRES 23 A 340 LEU LEU SER PRO ILE GLY MET PRO ALA LEU THR TRP PRO SEQRES 24 A 340 PHE ILE VAL VAL THR TRP LEU PHE LEU PHE ALA GLY SER SEQRES 25 A 340 MET PHE ARG ASN ILE ALA GLN VAL PRO THR GLU LYS ALA SEQRES 26 A 340 GLY THR PRO GLU ASP ASN LEU ARG SER LEU ALA ILE GLY SEQRES 27 A 340 SER ARG HET AU A 338 1 HET AU A 339 1 HET AU A 340 1 HET AU A 341 1 HET AU A 342 1 HET AU A 343 1 HET AU A 344 1 HET AU A 345 1 HET AU A 346 1 HETNAM AU GOLD ION FORMUL 2 AU 9(AU 1+) FORMUL 11 HOH *19(H2 O) HELIX 1 1 ALA A 1 LYS A 8 5 8 HELIX 2 2 ASN A 9 GLN A 24 1 16 HELIX 3 3 VAL A 25 PHE A 27 5 3 HELIX 4 4 ASN A 30 SER A 45 1 16 HELIX 5 5 SER A 45 GLY A 67 1 23 HELIX 6 6 ASP A 69 ALA A 75 1 7 HELIX 7 7 GLY A 79 PHE A 93 1 15 HELIX 8 8 ALA A 98 GLY A 122 1 25 HELIX 9 9 LYS A 123 GLY A 125 5 3 HELIX 10 10 THR A 130 PHE A 142 1 13 HELIX 11 11 GLY A 143 LYS A 146 5 4 HELIX 12 12 THR A 173 GLU A 187 1 15 HELIX 13 13 VAL A 188 PHE A 190 5 3 HELIX 14 14 ASN A 193 SER A 208 1 16 HELIX 15 15 SER A 208 MET A 229 1 22 HELIX 16 16 PRO A 232 LEU A 238 1 7 HELIX 17 17 GLY A 242 GLY A 253 1 12 HELIX 18 18 ASN A 260 LEU A 285 1 26 HELIX 19 19 SER A 286 GLY A 289 5 4 HELIX 20 20 THR A 294 SER A 309 1 16 HELIX 21 21 THR A 324 ALA A 333 1 10 LINK SG CYS A 15 AU AU A 340 1555 1555 1.89 LINK SG CYS A 15 AU AU A 346 1555 1555 2.55 LINK SG CYS A 19 AU AU A 339 1555 1555 1.29 LINK SG CYS A 19 AU AU A 340 1555 1555 2.38 LINK SG CYS A 51 AU AU A 341 1555 1555 2.48 LINK SG CYS A 51 AU AU A 343 1555 1555 1.84 LINK SG CYS A 224 AU AU A 342 1555 1555 2.67 LINK SG CYS A 224 AU AU A 344 1555 1555 1.74 SITE 1 AC1 1 GLN A 24 SITE 1 AC2 4 CYS A 19 LEU A 35 AU A 340 AU A 345 SITE 1 AC3 5 CYS A 15 CYS A 19 AU A 339 AU A 345 SITE 2 AC3 5 AU A 346 SITE 1 AC4 5 THR A 47 VAL A 50 CYS A 51 LEU A 100 SITE 2 AC4 5 AU A 343 SITE 1 AC5 2 CYS A 224 AU A 344 SITE 1 AC6 3 THR A 47 CYS A 51 AU A 341 SITE 1 AC7 2 CYS A 224 AU A 342 SITE 1 AC8 6 CYS A 15 ASP A 16 CYS A 19 AU A 339 SITE 2 AC8 6 AU A 340 AU A 346 SITE 1 AC9 3 CYS A 15 AU A 340 AU A 345 CRYST1 110.558 110.558 84.523 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009045 0.005222 0.000000 0.00000 SCALE2 0.000000 0.010444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011831 0.00000