HEADER OXIDOREDUCTASE 15-MAR-10 3M6I TITLE L-ARABINITOL 4-DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ARABINITOL 4-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 GENE: NCU00643, NCU00643.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS MEDIUM CHAIN DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.BAE,S.K.NAIR REVDAT 3 06-SEP-23 3M6I 1 REMARK LINK REVDAT 2 22-SEP-10 3M6I 1 JRNL REVDAT 1 21-JUL-10 3M6I 0 JRNL AUTH B.BAE,R.P.SULLIVAN,H.ZHAO,S.K.NAIR JRNL TITL STRUCTURE AND ENGINEERING OF L-ARABINITOL 4-DEHYDROGENASE JRNL TITL 2 FROM NEUROSPORA CRASSA JRNL REF J.MOL.BIOL. V. 402 230 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20655316 JRNL DOI 10.1016/J.JMB.2010.07.033 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0056 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2392 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5416 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.389 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5622 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7648 ; 1.562 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 714 ; 6.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;35.815 ;23.981 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 934 ;20.510 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.412 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 882 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4166 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3554 ; 0.657 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5744 ; 1.246 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2068 ; 1.665 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1904 ; 2.916 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34261 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.63200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PL7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE 10 MM NAD 100 MM REMARK 280 KCL 10 MM HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.78000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.56000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.78000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 149.56000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.78000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 149.56000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.78000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 149.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER IS ONE HALF OF BIOLOGICAL TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -251.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 134.52000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 134.52000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -252.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 373 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 396 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLU A 363 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 GLU B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 334 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 18 34.10 72.57 REMARK 500 GLU A 36 -74.61 -63.76 REMARK 500 SER A 55 -77.88 -24.18 REMARK 500 ILE A 65 -66.07 -120.93 REMARK 500 GLU A 71 68.49 -114.94 REMARK 500 CYS A 72 173.94 115.00 REMARK 500 HIS A 78 10.17 -145.47 REMARK 500 PRO A 104 45.69 -77.82 REMARK 500 ARG A 118 41.83 -81.73 REMARK 500 CYS A 205 139.76 -174.35 REMARK 500 LYS A 286 150.16 -44.06 REMARK 500 ARG A 308 -133.73 56.95 REMARK 500 ILE A 355 -87.79 -113.89 REMARK 500 SER B 6 -98.13 -128.34 REMARK 500 THR B 14 -164.29 -128.46 REMARK 500 ASN B 15 172.08 179.97 REMARK 500 HIS B 18 40.04 107.12 REMARK 500 SER B 23 177.32 178.91 REMARK 500 LYS B 39 -150.86 -72.65 REMARK 500 PHE B 59 1.76 -66.55 REMARK 500 HIS B 62 -74.86 -134.20 REMARK 500 CYS B 64 -152.36 175.65 REMARK 500 ILE B 65 -45.88 -142.96 REMARK 500 CYS B 72 -138.91 65.96 REMARK 500 ASP B 73 91.70 -54.58 REMARK 500 HIS B 78 12.40 -144.89 REMARK 500 ARG B 118 44.74 -74.20 REMARK 500 PRO B 132 39.17 -95.57 REMARK 500 ARG B 234 76.18 -57.16 REMARK 500 ARG B 308 -139.86 56.75 REMARK 500 ARG B 329 -8.61 -58.24 REMARK 500 ALA B 340 -36.91 -38.46 REMARK 500 ILE B 355 -83.18 -110.50 REMARK 500 SER B 361 66.42 -170.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 53 SG REMARK 620 2 HIS A 78 NE2 126.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 108 SG REMARK 620 2 CYS A 111 SG 110.5 REMARK 620 3 CYS A 114 SG 126.9 102.9 REMARK 620 4 CYS A 122 SG 107.1 107.6 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 53 SG REMARK 620 2 HIS B 78 NE2 93.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 108 SG REMARK 620 2 CYS B 111 SG 111.2 REMARK 620 3 CYS B 114 SG 118.3 103.2 REMARK 620 4 CYS B 122 SG 108.6 114.8 100.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 501 DBREF 3M6I A 1 363 UNP Q7SI09 Q7SI09_NEUCR 1 363 DBREF 3M6I B 1 363 UNP Q7SI09 Q7SI09_NEUCR 1 363 SEQRES 1 A 363 MET ALA SER SER ALA SER LYS THR ASN ILE GLY VAL PHE SEQRES 2 A 363 THR ASN PRO GLN HIS ASP LEU TRP ILE SER GLU ALA SER SEQRES 3 A 363 PRO SER LEU GLU SER VAL GLN LYS GLY GLU GLU LEU LYS SEQRES 4 A 363 GLU GLY GLU VAL THR VAL ALA VAL ARG SER THR GLY ILE SEQRES 5 A 363 CYS GLY SER ASP VAL HIS PHE TRP LYS HIS GLY CYS ILE SEQRES 6 A 363 GLY PRO MET ILE VAL GLU CYS ASP HIS VAL LEU GLY HIS SEQRES 7 A 363 GLU SER ALA GLY GLU VAL ILE ALA VAL HIS PRO SER VAL SEQRES 8 A 363 LYS SER ILE LYS VAL GLY ASP ARG VAL ALA ILE GLU PRO SEQRES 9 A 363 GLN VAL ILE CYS ASN ALA CYS GLU PRO CYS LEU THR GLY SEQRES 10 A 363 ARG TYR ASN GLY CYS GLU ARG VAL ASP PHE LEU SER THR SEQRES 11 A 363 PRO PRO VAL PRO GLY LEU LEU ARG ARG TYR VAL ASN HIS SEQRES 12 A 363 PRO ALA VAL TRP CYS HIS LYS ILE GLY ASN MET SER TYR SEQRES 13 A 363 GLU ASN GLY ALA MET LEU GLU PRO LEU SER VAL ALA LEU SEQRES 14 A 363 ALA GLY LEU GLN ARG ALA GLY VAL ARG LEU GLY ASP PRO SEQRES 15 A 363 VAL LEU ILE CYS GLY ALA GLY PRO ILE GLY LEU ILE THR SEQRES 16 A 363 MET LEU CYS ALA LYS ALA ALA GLY ALA CYS PRO LEU VAL SEQRES 17 A 363 ILE THR ASP ILE ASP GLU GLY ARG LEU LYS PHE ALA LYS SEQRES 18 A 363 GLU ILE CYS PRO GLU VAL VAL THR HIS LYS VAL GLU ARG SEQRES 19 A 363 LEU SER ALA GLU GLU SER ALA LYS LYS ILE VAL GLU SER SEQRES 20 A 363 PHE GLY GLY ILE GLU PRO ALA VAL ALA LEU GLU CYS THR SEQRES 21 A 363 GLY VAL GLU SER SER ILE ALA ALA ALA ILE TRP ALA VAL SEQRES 22 A 363 LYS PHE GLY GLY LYS VAL PHE VAL ILE GLY VAL GLY LYS SEQRES 23 A 363 ASN GLU ILE GLN ILE PRO PHE MET ARG ALA SER VAL ARG SEQRES 24 A 363 GLU VAL ASP LEU GLN PHE GLN TYR ARG TYR CYS ASN THR SEQRES 25 A 363 TRP PRO ARG ALA ILE ARG LEU VAL GLU ASN GLY LEU VAL SEQRES 26 A 363 ASP LEU THR ARG LEU VAL THR HIS ARG PHE PRO LEU GLU SEQRES 27 A 363 ASP ALA LEU LYS ALA PHE GLU THR ALA SER ASP PRO LYS SEQRES 28 A 363 THR GLY ALA ILE LYS VAL GLN ILE GLN SER LEU GLU SEQRES 1 B 363 MET ALA SER SER ALA SER LYS THR ASN ILE GLY VAL PHE SEQRES 2 B 363 THR ASN PRO GLN HIS ASP LEU TRP ILE SER GLU ALA SER SEQRES 3 B 363 PRO SER LEU GLU SER VAL GLN LYS GLY GLU GLU LEU LYS SEQRES 4 B 363 GLU GLY GLU VAL THR VAL ALA VAL ARG SER THR GLY ILE SEQRES 5 B 363 CYS GLY SER ASP VAL HIS PHE TRP LYS HIS GLY CYS ILE SEQRES 6 B 363 GLY PRO MET ILE VAL GLU CYS ASP HIS VAL LEU GLY HIS SEQRES 7 B 363 GLU SER ALA GLY GLU VAL ILE ALA VAL HIS PRO SER VAL SEQRES 8 B 363 LYS SER ILE LYS VAL GLY ASP ARG VAL ALA ILE GLU PRO SEQRES 9 B 363 GLN VAL ILE CYS ASN ALA CYS GLU PRO CYS LEU THR GLY SEQRES 10 B 363 ARG TYR ASN GLY CYS GLU ARG VAL ASP PHE LEU SER THR SEQRES 11 B 363 PRO PRO VAL PRO GLY LEU LEU ARG ARG TYR VAL ASN HIS SEQRES 12 B 363 PRO ALA VAL TRP CYS HIS LYS ILE GLY ASN MET SER TYR SEQRES 13 B 363 GLU ASN GLY ALA MET LEU GLU PRO LEU SER VAL ALA LEU SEQRES 14 B 363 ALA GLY LEU GLN ARG ALA GLY VAL ARG LEU GLY ASP PRO SEQRES 15 B 363 VAL LEU ILE CYS GLY ALA GLY PRO ILE GLY LEU ILE THR SEQRES 16 B 363 MET LEU CYS ALA LYS ALA ALA GLY ALA CYS PRO LEU VAL SEQRES 17 B 363 ILE THR ASP ILE ASP GLU GLY ARG LEU LYS PHE ALA LYS SEQRES 18 B 363 GLU ILE CYS PRO GLU VAL VAL THR HIS LYS VAL GLU ARG SEQRES 19 B 363 LEU SER ALA GLU GLU SER ALA LYS LYS ILE VAL GLU SER SEQRES 20 B 363 PHE GLY GLY ILE GLU PRO ALA VAL ALA LEU GLU CYS THR SEQRES 21 B 363 GLY VAL GLU SER SER ILE ALA ALA ALA ILE TRP ALA VAL SEQRES 22 B 363 LYS PHE GLY GLY LYS VAL PHE VAL ILE GLY VAL GLY LYS SEQRES 23 B 363 ASN GLU ILE GLN ILE PRO PHE MET ARG ALA SER VAL ARG SEQRES 24 B 363 GLU VAL ASP LEU GLN PHE GLN TYR ARG TYR CYS ASN THR SEQRES 25 B 363 TRP PRO ARG ALA ILE ARG LEU VAL GLU ASN GLY LEU VAL SEQRES 26 B 363 ASP LEU THR ARG LEU VAL THR HIS ARG PHE PRO LEU GLU SEQRES 27 B 363 ASP ALA LEU LYS ALA PHE GLU THR ALA SER ASP PRO LYS SEQRES 28 B 363 THR GLY ALA ILE LYS VAL GLN ILE GLN SER LEU GLU HET ZN A 401 1 HET ZN A 402 1 HET NAD A 501 44 HET ZN B 401 1 HET ZN B 402 1 HET NAD B 501 44 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 HOH *146(H2 O) HELIX 1 1 SER A 28 GLY A 35 1 8 HELIX 2 2 CYS A 53 GLY A 63 1 11 HELIX 3 3 CYS A 111 THR A 116 1 6 HELIX 4 4 ARG A 118 CYS A 122 5 5 HELIX 5 5 SER A 155 GLY A 176 1 22 HELIX 6 6 GLY A 189 ALA A 202 1 14 HELIX 7 7 ASP A 213 CYS A 224 1 12 HELIX 8 8 SER A 236 PHE A 248 1 13 HELIX 9 9 VAL A 262 VAL A 273 1 12 HELIX 10 10 PRO A 292 GLU A 300 1 9 HELIX 11 11 THR A 312 ASN A 322 1 11 HELIX 12 12 LEU A 327 ARG A 329 5 3 HELIX 13 13 ASP A 339 ASP A 349 1 11 HELIX 14 14 PRO A 350 GLY A 353 5 4 HELIX 15 15 SER B 28 GLY B 35 1 8 HELIX 16 16 CYS B 53 HIS B 62 1 10 HELIX 17 17 CYS B 111 THR B 116 1 6 HELIX 18 18 ARG B 118 CYS B 122 5 5 HELIX 19 19 SER B 155 GLY B 176 1 22 HELIX 20 20 GLY B 189 ALA B 202 1 14 HELIX 21 21 ASP B 213 CYS B 224 1 12 HELIX 22 22 SER B 236 PHE B 248 1 13 HELIX 23 23 VAL B 262 VAL B 273 1 12 HELIX 24 24 PRO B 292 ARG B 299 1 8 HELIX 25 25 THR B 312 ASN B 322 1 11 HELIX 26 26 LEU B 327 ARG B 329 5 3 HELIX 27 27 ASP B 339 ASP B 349 1 11 SHEET 1 A 3 LEU A 20 GLU A 24 0 SHEET 2 A 3 ILE A 10 THR A 14 -1 N GLY A 11 O SER A 23 SHEET 3 A 3 HIS A 74 VAL A 75 -1 O HIS A 74 N THR A 14 SHEET 1 B 5 TYR A 140 PRO A 144 0 SHEET 2 B 5 GLU A 42 GLY A 51 -1 N VAL A 43 O HIS A 143 SHEET 3 B 5 GLU A 79 VAL A 87 -1 O GLU A 83 N ALA A 46 SHEET 4 B 5 ARG A 99 ILE A 102 -1 O ILE A 102 N SER A 80 SHEET 5 B 5 CYS A 148 LYS A 150 -1 O HIS A 149 N ALA A 101 SHEET 1 C 4 TYR A 140 PRO A 144 0 SHEET 2 C 4 GLU A 42 GLY A 51 -1 N VAL A 43 O HIS A 143 SHEET 3 C 4 LYS A 356 GLN A 360 -1 O ILE A 359 N THR A 50 SHEET 4 C 4 VAL A 331 PRO A 336 1 N PHE A 335 O GLN A 360 SHEET 1 D 2 GLN A 105 VAL A 106 0 SHEET 2 D 2 ASP A 126 PHE A 127 -1 O ASP A 126 N VAL A 106 SHEET 1 E 6 VAL A 228 LYS A 231 0 SHEET 2 E 6 LEU A 207 ASP A 211 1 N ILE A 209 O HIS A 230 SHEET 3 E 6 VAL A 183 CYS A 186 1 N ILE A 185 O VAL A 208 SHEET 4 E 6 VAL A 255 GLU A 258 1 O LEU A 257 N LEU A 184 SHEET 5 E 6 LYS A 278 VAL A 281 1 O PHE A 280 N ALA A 256 SHEET 6 E 6 ASP A 302 PHE A 305 1 O GLN A 304 N VAL A 281 SHEET 1 F 3 TRP B 21 SER B 23 0 SHEET 2 F 3 GLY B 11 THR B 14 -1 N GLY B 11 O SER B 23 SHEET 3 F 3 HIS B 74 VAL B 75 -1 O HIS B 74 N THR B 14 SHEET 1 G 5 TYR B 140 PRO B 144 0 SHEET 2 G 5 GLU B 42 GLY B 51 -1 N VAL B 43 O HIS B 143 SHEET 3 G 5 GLU B 79 VAL B 87 -1 O GLU B 83 N ALA B 46 SHEET 4 G 5 ARG B 99 ILE B 102 -1 O VAL B 100 N GLY B 82 SHEET 5 G 5 CYS B 148 LYS B 150 -1 O HIS B 149 N ALA B 101 SHEET 1 H 4 TYR B 140 PRO B 144 0 SHEET 2 H 4 GLU B 42 GLY B 51 -1 N VAL B 43 O HIS B 143 SHEET 3 H 4 LYS B 356 GLN B 360 -1 O ILE B 359 N THR B 50 SHEET 4 H 4 VAL B 331 PRO B 336 1 N PHE B 335 O GLN B 360 SHEET 1 I 2 GLN B 105 VAL B 106 0 SHEET 2 I 2 ASP B 126 PHE B 127 -1 O ASP B 126 N VAL B 106 SHEET 1 J 6 VAL B 228 LYS B 231 0 SHEET 2 J 6 LEU B 207 ASP B 211 1 N ILE B 209 O VAL B 228 SHEET 3 J 6 VAL B 183 CYS B 186 1 N ILE B 185 O VAL B 208 SHEET 4 J 6 VAL B 255 GLU B 258 1 O LEU B 257 N LEU B 184 SHEET 5 J 6 LYS B 278 VAL B 281 1 O PHE B 280 N GLU B 258 SHEET 6 J 6 ASP B 302 PHE B 305 1 O ASP B 302 N VAL B 279 LINK SG CYS A 53 ZN ZN A 401 1555 1555 2.08 LINK NE2 HIS A 78 ZN ZN A 401 1555 1555 2.49 LINK SG CYS A 108 ZN ZN A 402 1555 1555 2.37 LINK SG CYS A 111 ZN ZN A 402 1555 1555 2.41 LINK SG CYS A 114 ZN ZN A 402 1555 1555 2.46 LINK SG CYS A 122 ZN ZN A 402 1555 1555 2.29 LINK SG CYS B 53 ZN ZN B 401 1555 1555 2.94 LINK NE2 HIS B 78 ZN ZN B 401 1555 1555 2.44 LINK SG CYS B 108 ZN ZN B 402 1555 1555 2.32 LINK SG CYS B 111 ZN ZN B 402 1555 1555 2.56 LINK SG CYS B 114 ZN ZN B 402 1555 1555 2.51 LINK SG CYS B 122 ZN ZN B 402 1555 1555 2.40 CISPEP 1 SER A 26 PRO A 27 0 -8.65 CISPEP 2 PRO A 131 PRO A 132 0 -0.27 CISPEP 3 CYS A 205 PRO A 206 0 0.38 CISPEP 4 SER B 26 PRO B 27 0 4.37 CISPEP 5 PRO B 131 PRO B 132 0 6.52 CISPEP 6 CYS B 205 PRO B 206 0 -10.17 SITE 1 AC1 5 CYS A 53 HIS A 78 GLU A 79 HOH A 412 SITE 2 AC1 5 NAD A 501 SITE 1 AC2 4 CYS A 108 CYS A 111 CYS A 114 CYS A 122 SITE 1 AC3 20 GLY A 54 SER A 55 VAL A 167 GLY A 189 SITE 2 AC3 20 PRO A 190 ILE A 191 ASP A 211 ILE A 212 SITE 3 AC3 20 ARG A 216 CYS A 259 THR A 260 ILE A 282 SITE 4 AC3 20 GLY A 283 VAL A 284 GLN A 306 ARG A 308 SITE 5 AC3 20 HOH A 377 ZN A 401 HOH A 421 HOH A 441 SITE 1 AC4 4 CYS B 53 HIS B 78 GLU B 79 GLU B 163 SITE 1 AC5 4 CYS B 108 CYS B 111 CYS B 114 CYS B 122 SITE 1 AC6 16 VAL B 167 GLY B 189 PRO B 190 ILE B 191 SITE 2 AC6 16 THR B 210 ASP B 211 ILE B 212 ARG B 216 SITE 3 AC6 16 VAL B 232 CYS B 259 THR B 260 ILE B 282 SITE 4 AC6 16 VAL B 284 GLN B 306 ARG B 308 HOH B 367 CRYST1 134.520 134.520 224.340 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007434 0.004292 0.000000 0.00000 SCALE2 0.000000 0.008584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004458 0.00000