HEADER TRANSFERASE 16-MAR-10 3M6W TITLE MULTI-SITE-SPECIFIC 16S RRNA METHYLTRANSFERASE RSMF FROM THERMUS TITLE 2 THERMOPHILUS IN SPACE GROUP P21212 IN COMPLEX WITH S-ADENOSYL-L- TITLE 3 METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRNA METHYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA1387; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CP79; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLJ102 KEYWDS RRNA METHYLTRANSFERASE, 5-METHYLCYTIDINE, RSMF, ADOMET, MULTI- KEYWDS 2 SPECIFIC, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,H.G.L.LARSEN,T.HANSEN,A.RASMUSSEN,A.CADAMBI,S.T.GREGORY, AUTHOR 2 F.KIRPEKAR,G.JOGL REVDAT 6 06-SEP-23 3M6W 1 REMARK SEQADV LINK REVDAT 5 08-NOV-17 3M6W 1 REMARK REVDAT 4 13-JUL-11 3M6W 1 VERSN REVDAT 3 28-JUL-10 3M6W 1 JRNL REVDAT 2 30-JUN-10 3M6W 1 JRNL REVDAT 1 31-MAR-10 3M6W 0 JRNL AUTH H.DEMIRCI,L.H.LARSEN,T.HANSEN,A.RASMUSSEN,A.CADAMBI, JRNL AUTH 2 S.T.GREGORY,F.KIRPEKAR,G.JOGL JRNL TITL MULTI-SITE-SPECIFIC 16S RRNA METHYLTRANSFERASE RSMF FROM JRNL TITL 2 THERMUS THERMOPHILUS. JRNL REF RNA V. 16 1584 2010 JRNL REFN ISSN 1355-8382 JRNL PMID 20558545 JRNL DOI 10.1261/RNA.2088310 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 119490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 6036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6040 - 4.0360 0.93 3926 204 0.1700 0.1590 REMARK 3 2 4.0360 - 3.2050 0.98 3931 223 0.1580 0.1690 REMARK 3 3 3.2050 - 2.8000 1.00 3992 202 0.1760 0.2000 REMARK 3 4 2.8000 - 2.5440 1.00 3949 219 0.1770 0.1900 REMARK 3 5 2.5440 - 2.3620 1.00 3943 210 0.1720 0.1820 REMARK 3 6 2.3620 - 2.2230 0.99 3918 199 0.1670 0.1920 REMARK 3 7 2.2230 - 2.1110 1.00 3880 233 0.1550 0.1740 REMARK 3 8 2.1110 - 2.0200 1.00 3939 187 0.1560 0.1570 REMARK 3 9 2.0200 - 1.9420 1.00 3867 243 0.1680 0.1820 REMARK 3 10 1.9420 - 1.8750 1.00 3857 218 0.1690 0.1880 REMARK 3 11 1.8750 - 1.8160 1.00 3890 247 0.1770 0.1900 REMARK 3 12 1.8160 - 1.7640 1.00 3878 193 0.1640 0.1720 REMARK 3 13 1.7640 - 1.7180 1.00 3933 193 0.1550 0.1860 REMARK 3 14 1.7180 - 1.6760 1.00 3879 202 0.1590 0.1740 REMARK 3 15 1.6760 - 1.6380 1.00 3863 216 0.1550 0.1920 REMARK 3 16 1.6380 - 1.6030 1.00 3899 190 0.1530 0.1770 REMARK 3 17 1.6030 - 1.5710 1.00 3936 185 0.1590 0.1910 REMARK 3 18 1.5710 - 1.5410 1.00 3807 222 0.1560 0.1750 REMARK 3 19 1.5410 - 1.5140 1.00 3919 203 0.1600 0.1530 REMARK 3 20 1.5140 - 1.4880 1.00 3822 236 0.1690 0.1870 REMARK 3 21 1.4880 - 1.4640 1.00 3874 202 0.1680 0.1960 REMARK 3 22 1.4640 - 1.4420 1.00 3870 207 0.1740 0.1920 REMARK 3 23 1.4420 - 1.4200 1.00 3915 162 0.1880 0.2260 REMARK 3 24 1.4200 - 1.4000 1.00 3875 184 0.1870 0.2160 REMARK 3 25 1.4000 - 1.3810 0.99 3823 205 0.1980 0.2180 REMARK 3 26 1.3810 - 1.3630 0.96 3746 185 0.2080 0.2220 REMARK 3 27 1.3630 - 1.3470 0.92 3565 200 0.2160 0.2180 REMARK 3 28 1.3470 - 1.3300 0.85 3286 166 0.2260 0.2740 REMARK 3 29 1.3300 - 1.3150 0.77 2960 172 0.2280 0.2260 REMARK 3 30 1.3150 - 1.3000 0.65 2512 128 0.2330 0.2340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 39.21 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01100 REMARK 3 B22 (A**2) : 0.35200 REMARK 3 B33 (A**2) : -0.36300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3744 REMARK 3 ANGLE : 1.135 5104 REMARK 3 CHIRALITY : 0.068 535 REMARK 3 PLANARITY : 0.007 674 REMARK 3 DIHEDRAL : 17.786 1416 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1:47 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0127 -12.2621 26.4119 REMARK 3 T TENSOR REMARK 3 T11: 0.0111 T22: 0.0283 REMARK 3 T33: 0.0547 T12: -0.0011 REMARK 3 T13: -0.0015 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0740 L22: 0.2944 REMARK 3 L33: 0.2408 L12: 0.1425 REMARK 3 L13: 0.0567 L23: 0.1041 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.0370 S13: -0.0242 REMARK 3 S21: 0.0275 S22: -0.0244 S23: -0.0872 REMARK 3 S31: 0.0297 S32: 0.0337 S33: -0.0036 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 48:179 REMARK 3 ORIGIN FOR THE GROUP (A): -23.2237 -19.2974 15.0585 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0183 REMARK 3 T33: 0.0400 T12: -0.0031 REMARK 3 T13: 0.0067 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.1985 L22: 0.1817 REMARK 3 L33: 0.0880 L12: -0.1242 REMARK 3 L13: 0.0591 L23: 0.1707 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 0.0088 S13: 0.0008 REMARK 3 S21: 0.0075 S22: -0.0023 S23: 0.0187 REMARK 3 S31: 0.0018 S32: 0.0044 S33: 0.0182 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 180:313 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1854 -4.7567 24.0904 REMARK 3 T TENSOR REMARK 3 T11: 0.0195 T22: 0.0141 REMARK 3 T33: 0.0370 T12: 0.0013 REMARK 3 T13: 0.0000 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.1936 L22: 0.2157 REMARK 3 L33: 0.4850 L12: -0.0667 REMARK 3 L13: 0.1510 L23: 0.2052 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: -0.0030 S13: 0.0362 REMARK 3 S21: -0.0048 S22: -0.0251 S23: 0.0091 REMARK 3 S31: -0.0490 S32: -0.0339 S33: 0.0452 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 314:343 REMARK 3 ORIGIN FOR THE GROUP (A): -37.3739 -31.7742 -6.6148 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0918 REMARK 3 T33: 0.1061 T12: 0.0034 REMARK 3 T13: -0.0575 T23: -0.0919 REMARK 3 L TENSOR REMARK 3 L11: 0.2569 L22: 1.2136 REMARK 3 L33: 0.4225 L12: -0.2524 REMARK 3 L13: -0.2453 L23: -0.0172 REMARK 3 S TENSOR REMARK 3 S11: 0.1083 S12: 0.2755 S13: -0.1758 REMARK 3 S21: 0.0554 S22: -0.0834 S23: 0.2168 REMARK 3 S31: -0.0044 S32: -0.1470 S33: 0.0419 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESSEQ 344:461 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7736 -32.7674 -0.9096 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0471 REMARK 3 T33: 0.0416 T12: 0.0068 REMARK 3 T13: 0.0034 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.6006 L22: 0.4000 REMARK 3 L33: 0.2006 L12: -0.0701 REMARK 3 L13: 0.0303 L23: 0.2474 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.1189 S13: -0.1208 REMARK 3 S21: -0.0124 S22: -0.0358 S23: 0.0541 REMARK 3 S31: 0.0064 S32: -0.0023 S33: 0.0056 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3M6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR WITH A WATER- REMARK 200 COOLED FLAT FIRST CRYSTAL AND A REMARK 200 SAGITTALLY FOCUSED SECOND REMARK 200 CRYSTAL POSITIONED FOR A FIXED REMARK 200 EXIT BEAM CONDITION. LOCATED ~18 REMARK 200 M FROM SOURCE AND ~6 M FROM REMARK 200 SAMPLE POSITION. REMARK 200 OPTICS : SLITS: VARIABLE VERTICAL AND REMARK 200 FIXED HORIZONTAL SLITS. MIRROR: REMARK 200 MIRROR SYSTEM CONSISTING OF TWO REMARK 200 VERTICALLY STACKED, FUSED SILICA, REMARK 200 SPHERICAL MIRRORS, TO PROVIDE REMARK 200 VERTICAL FOCUSING AND HARMONIC REMARK 200 REJECTION. ONE OF THE MIRRORS IS REMARK 200 RHODIUM COATED AND THE OTHER IS REMARK 200 UNCOATED. LOCATED ~19.7 M FROM REMARK 200 SOURCE. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3M6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG1000, 200 MM NACL AND 100 REMARK 280 MM TRIS-HCL (PH8.5), MICROBATCH UNDER OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.83050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.52350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.83050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.52350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 827 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 460 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 230 O HOH A 984 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 237 -96.02 -113.81 REMARK 500 ALA A 387 -60.56 -107.05 REMARK 500 ASP A 440 167.96 179.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 466 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FRX RELATED DB: PDB REMARK 900 E. COLI YEBU REMARK 900 RELATED ID: 3M6U RELATED DB: PDB REMARK 900 RELATED ID: 3M6V RELATED DB: PDB REMARK 900 RELATED ID: 3M6X RELATED DB: PDB DBREF 3M6W A 1 456 UNP Q5SII2 Q5SII2_THET8 1 456 SEQADV 3M6W ARG A 457 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6W SER A 458 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6W HIS A 459 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6W HIS A 460 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6W HIS A 461 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6W HIS A 462 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6W HIS A 463 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6W HIS A 464 UNP Q5SII2 EXPRESSION TAG SEQRES 1 A 464 CXM LEU PRO LYS ALA PHE LEU SER ARG MET ALA GLU LEU SEQRES 2 A 464 LEU GLY GLU GLU PHE PRO ALA PHE LEU LYS ALA LEU THR SEQRES 3 A 464 GLU GLY LYS ARG THR TYR GLY LEU ARG VAL ASN THR LEU SEQRES 4 A 464 LYS LEU PRO PRO GLU ALA PHE GLN ARG ILE SER PRO TRP SEQRES 5 A 464 PRO LEU ARG PRO ILE PRO TRP CYS GLN GLU GLY PHE TYR SEQRES 6 A 464 TYR PRO GLU GLU ALA ARG PRO GLY PRO HIS PRO PHE PHE SEQRES 7 A 464 TYR ALA GLY LEU TYR TYR ILE GLN GLU PRO SER ALA GLN SEQRES 8 A 464 ALA VAL GLY VAL LEU LEU ASP PRO LYS PRO GLY GLU ARG SEQRES 9 A 464 VAL LEU ASP LEU ALA ALA ALA PRO GLY GLY LYS THR THR SEQRES 10 A 464 HIS LEU ALA ALA ARG MET GLY GLY LYS GLY LEU LEU LEU SEQRES 11 A 464 ALA ASN GLU VAL ASP GLY LYS ARG VAL ARG GLY LEU LEU SEQRES 12 A 464 GLU ASN VAL GLU ARG TRP GLY ALA PRO LEU ALA VAL THR SEQRES 13 A 464 GLN ALA PRO PRO ARG ALA LEU ALA GLU ALA PHE GLY THR SEQRES 14 A 464 TYR PHE HIS ARG VAL LEU LEU ASP ALA PRO CYS SER GLY SEQRES 15 A 464 GLU GLY MET PHE ARG LYS ASP ARG GLU ALA ALA ARG HIS SEQRES 16 A 464 TRP GLY PRO SER ALA PRO LYS ARG MET ALA GLU VAL GLN SEQRES 17 A 464 LYS ALA LEU LEU ALA GLN ALA SER ARG LEU LEU GLY PRO SEQRES 18 A 464 GLY GLY VAL LEU VAL TYR SER THR CYS THR PHE ALA PRO SEQRES 19 A 464 GLU GLU ASN GLU GLY VAL VAL ALA HIS PHE LEU LYS ALA SEQRES 20 A 464 HIS PRO GLU PHE ARG LEU GLU ASP ALA ARG LEU HIS PRO SEQRES 21 A 464 LEU PHE ALA PRO GLY VAL PRO GLU TRP GLY GLU GLY ASN SEQRES 22 A 464 PRO GLU LEU LEU LYS THR ALA ARG LEU TRP PRO HIS ARG SEQRES 23 A 464 LEU GLU GLY GLU GLY HIS PHE LEU ALA ARG PHE ARG LYS SEQRES 24 A 464 GLU GLY GLY ALA TRP SER THR PRO ARG LEU GLU ARG PRO SEQRES 25 A 464 SER PRO LEU SER GLN GLU ALA LEU ARG ALA PHE ARG GLY SEQRES 26 A 464 PHE LEU GLU GLU ALA GLY LEU THR LEU GLU GLY PRO VAL SEQRES 27 A 464 LEU ASP ARG ALA GLY HIS LEU TYR LEU LEU PRO GLU GLY SEQRES 28 A 464 LEU PRO THR LEU LEU GLY LEU LYS ALA PRO ALA PRO GLY SEQRES 29 A 464 LEU TYR LEU GLY LYS VAL GLN LYS GLY ARG PHE LEU PRO SEQRES 30 A 464 ALA ARG ALA LEU ALA LEU ALA PHE GLY ALA THR LEU PRO SEQRES 31 A 464 TRP PRO GLU GLY LEU PRO ARG LEU ALA LEU THR PRO GLU SEQRES 32 A 464 ASP PRO ARG ALA LEU ALA PHE ALA THR GLY GLU GLY VAL SEQRES 33 A 464 ALA TRP GLU GLY GLU ASP HIS PRO LEU ALA LEU VAL VAL SEQRES 34 A 464 LEU LYS THR ALA ALA GLY GLU PHE PRO LEU ASP PHE GLY SEQRES 35 A 464 LYS ALA LYS ARG GLY VAL LEU ARG PRO VAL GLY VAL GLY SEQRES 36 A 464 LEU ARG SER HIS HIS HIS HIS HIS HIS MODRES 3M6W CXM A 1 MET N-CARBOXYMETHIONINE HET CXM A 1 11 HET SAM A 465 27 HET CL A 466 1 HETNAM CXM N-CARBOXYMETHIONINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 CXM C6 H11 N O4 S FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 CL CL 1- FORMUL 4 HOH *856(H2 O) HELIX 1 1 PRO A 3 GLY A 15 1 13 HELIX 2 2 GLU A 17 GLU A 27 1 11 HELIX 3 3 PRO A 42 SER A 50 1 9 HELIX 4 4 HIS A 75 ALA A 80 1 6 HELIX 5 5 PRO A 88 ALA A 90 5 3 HELIX 6 6 GLN A 91 ASP A 98 1 8 HELIX 7 7 GLY A 113 MET A 123 1 11 HELIX 8 8 ASP A 135 GLY A 150 1 16 HELIX 9 9 PRO A 159 GLY A 168 1 10 HELIX 10 10 GLY A 182 PHE A 186 5 5 HELIX 11 11 ALA A 192 TRP A 196 5 5 HELIX 12 12 SER A 199 ARG A 217 1 19 HELIX 13 13 ALA A 233 GLU A 236 5 4 HELIX 14 14 ASN A 237 HIS A 248 1 12 HELIX 15 15 VAL A 266 GLY A 270 5 5 HELIX 16 16 ASN A 273 LYS A 278 5 6 HELIX 17 17 SER A 316 GLY A 331 1 16 HELIX 18 18 ALA A 378 PHE A 385 1 8 HELIX 19 19 ASP A 404 THR A 412 1 9 SHEET 1 A 4 ARG A 55 ILE A 57 0 SHEET 2 A 4 CYS A 60 TYR A 65 -1 O TYR A 65 N ARG A 55 SHEET 3 A 4 GLY A 33 VAL A 36 -1 N VAL A 36 O GLU A 62 SHEET 4 A 4 TYR A 83 ILE A 85 -1 O TYR A 84 N ARG A 35 SHEET 1 B 7 ALA A 154 THR A 156 0 SHEET 2 B 7 LEU A 128 ASN A 132 1 N ALA A 131 O ALA A 154 SHEET 3 B 7 ARG A 104 ASP A 107 1 N ASP A 107 O ASN A 132 SHEET 4 B 7 PHE A 171 ASP A 177 1 O LEU A 175 N LEU A 106 SHEET 5 B 7 LEU A 219 THR A 229 1 O VAL A 226 N LEU A 176 SHEET 6 B 7 HIS A 292 LYS A 299 -1 O PHE A 297 N LEU A 225 SHEET 7 B 7 PHE A 251 GLU A 254 -1 N GLU A 254 O ARG A 296 SHEET 1 C 8 ALA A 154 THR A 156 0 SHEET 2 C 8 LEU A 128 ASN A 132 1 N ALA A 131 O ALA A 154 SHEET 3 C 8 ARG A 104 ASP A 107 1 N ASP A 107 O ASN A 132 SHEET 4 C 8 PHE A 171 ASP A 177 1 O LEU A 175 N LEU A 106 SHEET 5 C 8 LEU A 219 THR A 229 1 O VAL A 226 N LEU A 176 SHEET 6 C 8 HIS A 292 LYS A 299 -1 O PHE A 297 N LEU A 225 SHEET 7 C 8 ALA A 280 LEU A 282 -1 N LEU A 282 O HIS A 292 SHEET 8 C 8 ALA A 263 PRO A 264 -1 N ALA A 263 O ARG A 281 SHEET 1 D 4 VAL A 338 ARG A 341 0 SHEET 2 D 4 HIS A 344 LEU A 347 -1 O HIS A 344 N ARG A 341 SHEET 3 D 4 LEU A 365 GLN A 371 -1 O GLY A 368 N LEU A 345 SHEET 4 D 4 ARG A 374 PRO A 377 -1 O LEU A 376 N LYS A 369 SHEET 1 E 5 ARG A 397 LEU A 400 0 SHEET 2 E 5 HIS A 423 THR A 432 1 O VAL A 429 N LEU A 398 SHEET 3 E 5 GLY A 435 LYS A 445 -1 O PHE A 437 N LEU A 430 SHEET 4 E 5 VAL A 448 PRO A 451 -1 O ARG A 450 N LYS A 443 SHEET 5 E 5 VAL A 416 ALA A 417 -1 N VAL A 416 O LEU A 449 LINK C CXM A 1 N LEU A 2 1555 1555 1.34 CISPEP 1 ALA A 111 PRO A 112 0 3.15 SITE 1 AC1 23 ALA A 109 ALA A 110 ALA A 111 PRO A 112 SITE 2 AC1 23 GLY A 113 GLY A 114 LYS A 115 GLU A 133 SITE 3 AC1 23 VAL A 134 ARG A 138 ASP A 177 ALA A 178 SITE 4 AC1 23 PRO A 179 LEU A 211 HOH A 476 HOH A 541 SITE 5 AC1 23 HOH A 837 HOH A 869 HOH A 991 HOH A1201 SITE 6 AC1 23 HOH A1207 HOH A1223 HOH A1242 SITE 1 AC2 5 ARG A 71 PRO A 72 GLY A 73 HOH A 542 SITE 2 AC2 5 HOH A1260 CRYST1 89.661 109.047 50.982 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011153 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019615 0.00000 HETATM 1 N CXM A 1 -0.525 -4.777 20.281 1.00 15.99 N ANISOU 1 N CXM A 1 1673 2004 2399 -53 97 -126 N HETATM 2 CA CXM A 1 -0.409 -3.341 20.215 1.00 14.19 C ANISOU 2 CA CXM A 1 1454 1780 2158 -74 98 -131 C HETATM 3 CB CXM A 1 -0.542 -2.877 18.765 1.00 21.47 C ANISOU 3 CB CXM A 1 2395 2691 3072 -84 126 -142 C HETATM 4 CG CXM A 1 0.063 -1.495 18.655 1.00 25.34 C ANISOU 4 CG CXM A 1 2886 3185 3555 -107 130 -148 C HETATM 5 SD CXM A 1 1.872 -1.630 18.503 1.00 37.22 S ANISOU 5 SD CXM A 1 4348 4702 5093 -115 143 -155 S HETATM 6 CE CXM A 1 2.121 -2.039 16.766 1.00 42.43 C ANISOU 6 CE CXM A 1 5015 5350 5758 -120 183 -167 C HETATM 7 C CXM A 1 -1.595 -2.772 21.009 1.00 12.62 C ANISOU 7 C CXM A 1 1280 1581 1933 -76 79 -127 C HETATM 8 O CXM A 1 -2.685 -3.303 20.902 1.00 14.17 O ANISOU 8 O CXM A 1 1496 1771 2117 -66 78 -125 O HETATM 9 CN CXM A 1 0.628 -5.522 20.219 1.00 15.25 C ANISOU 9 CN CXM A 1 1546 1912 2334 -45 101 -127 C HETATM 10 ON1 CXM A 1 1.745 -5.119 20.531 1.00 14.08 O ANISOU 10 ON1 CXM A 1 1372 1775 2204 -52 98 -129 O HETATM 11 ON2 CXM A 1 0.419 -6.805 19.895 1.00 16.47 O ANISOU 11 ON2 CXM A 1 1700 2059 2499 -27 106 -124 O