HEADER HYDROLASE/DNA 16-MAR-10 3M7K TITLE CRYSTAL STRUCTURE OF PACI-DNA ENZYME PRODUCT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESTRICTION ENDONUCLEASE PACI; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*AP*GP*GP*CP*TP*TP*AP*AP*T)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: TOP STRAND PRODUCT OF PACI; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*TP*AP*AP*GP*CP*CP*TP*C)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: BOTTOM STRAND OF PACI PRODUCT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS ALCALIGENES; SOURCE 3 ORGANISM_TAXID: 43263; SOURCE 4 STRAIN: NEB 585; SOURCE 5 GENE: PACIR; SOURCE 6 EXPRESSION_SYSTEM: PSEUDOMONAS ALCALIGENES; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 43263; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NEB 585; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVS1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS HNH RESTRICTION ENDONUCLEASE, BETA-BETA-ALPHA-METAL ACTIVE SITE, 8 KEYWDS 2 BASE-PAIR RARE CUTTER, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.W.SHEN,B.L.STODDARD REVDAT 4 21-FEB-24 3M7K 1 REMARK DBREF LINK REVDAT 3 08-NOV-17 3M7K 1 REMARK REVDAT 2 20-JUL-11 3M7K 1 JRNL REVDAT 1 21-APR-10 3M7K 0 JRNL AUTH B.W.SHEN,D.F.HEITER,S.H.CHAN,H.WANG,S.Y.XU,R.D.MORGAN, JRNL AUTH 2 G.G.WILSON,B.L.STODDARD JRNL TITL UNUSUAL TARGET SITE DISRUPTION BY THE RARE-CUTTING HNH JRNL TITL 2 RESTRICTION ENDONUCLEASE PACI. JRNL REF STRUCTURE V. 18 734 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20541511 JRNL DOI 10.1016/J.STR.2010.03.009 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 18941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1251 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1102 REMARK 3 NUCLEIC ACID ATOMS : 367 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15000 REMARK 3 B22 (A**2) : 3.55000 REMARK 3 B33 (A**2) : -4.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1608 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2259 ; 1.305 ; 2.222 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 159 ; 5.199 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;34.700 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 195 ;14.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 236 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1133 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 730 ; 1.300 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1167 ; 2.365 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 878 ; 2.767 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1084 ; 4.172 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1608 ; 1.544 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7691 32.8497 44.5516 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0260 REMARK 3 T33: 0.0025 T12: -0.0050 REMARK 3 T13: -0.0056 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0839 L22: 0.5359 REMARK 3 L33: 1.2985 L12: -0.0766 REMARK 3 L13: -0.0712 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0338 S13: -0.0030 REMARK 3 S21: 0.0831 S22: 0.0296 S23: -0.0113 REMARK 3 S31: 0.0173 S32: 0.0182 S33: -0.0406 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 10 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1873 47.2614 40.6220 REMARK 3 T TENSOR REMARK 3 T11: 0.0721 T22: 0.0101 REMARK 3 T33: 0.0302 T12: -0.0079 REMARK 3 T13: 0.0211 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.5695 L22: 0.9079 REMARK 3 L33: 1.9079 L12: -0.0365 REMARK 3 L13: -0.0125 L23: 0.9691 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.0108 S13: 0.1121 REMARK 3 S21: 0.0916 S22: -0.0281 S23: 0.0250 REMARK 3 S31: -0.1036 S32: -0.0389 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 18 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2371 49.0316 45.5685 REMARK 3 T TENSOR REMARK 3 T11: 0.0587 T22: 0.1225 REMARK 3 T33: 0.0878 T12: 0.0123 REMARK 3 T13: 0.0125 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.3975 L22: 0.1889 REMARK 3 L33: 2.0067 L12: 0.0476 REMARK 3 L13: -0.2785 L23: -0.1715 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.1312 S13: 0.0173 REMARK 3 S21: 0.0151 S22: -0.0131 S23: -0.0322 REMARK 3 S31: -0.2219 S32: 0.2622 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1916 32.4357 41.9831 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.1203 REMARK 3 T33: 0.1125 T12: 0.0216 REMARK 3 T13: -0.0305 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 0.1046 L22: 1.1584 REMARK 3 L33: 0.9493 L12: 0.0495 REMARK 3 L13: -0.1853 L23: 0.0474 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: 0.0442 S13: -0.0656 REMARK 3 S21: -0.0330 S22: -0.0780 S23: 0.0359 REMARK 3 S31: -0.0711 S32: 0.0374 S33: 0.0326 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8100 28.4772 31.1667 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.2368 REMARK 3 T33: 0.1636 T12: -0.0527 REMARK 3 T13: 0.1052 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 356.6372 L22: 481.3037 REMARK 3 L33: 38.0110 L12:-414.3076 REMARK 3 L13:-116.4308 L23: 135.2584 REMARK 3 S TENSOR REMARK 3 S11: 1.4489 S12: 1.2176 S13: 0.2026 REMARK 3 S21: -1.6642 S22: -1.4002 S23: -0.2358 REMARK 3 S31: -0.4657 S32: -0.3963 S33: -0.0487 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9571 33.6845 41.3719 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.0316 REMARK 3 T33: 0.0233 T12: -0.0025 REMARK 3 T13: -0.0053 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.8300 L22: 0.4174 REMARK 3 L33: 1.5724 L12: 0.1752 REMARK 3 L13: -0.0762 L23: 0.1458 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.0714 S13: -0.0210 REMARK 3 S21: 0.0922 S22: -0.0105 S23: -0.0359 REMARK 3 S31: -0.0008 S32: 0.0562 S33: -0.0076 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6094 22.6971 48.7351 REMARK 3 T TENSOR REMARK 3 T11: 0.5543 T22: 0.1742 REMARK 3 T33: 0.1324 T12: 0.1123 REMARK 3 T13: 0.0900 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 7.1170 L22: 8.4918 REMARK 3 L33: 1.6335 L12: -7.7731 REMARK 3 L13: 3.4093 L23: -3.7243 REMARK 3 S TENSOR REMARK 3 S11: 0.3215 S12: 0.0009 S13: -0.4596 REMARK 3 S21: -0.4219 S22: -0.0581 S23: 0.5041 REMARK 3 S31: 0.1796 S32: 0.0074 S33: -0.2634 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0383 REMARK 3 T33: 0.0383 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 10 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0383 REMARK 3 T33: 0.0383 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 18 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0383 REMARK 3 T33: 0.0383 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0383 REMARK 3 T33: 0.0383 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0383 REMARK 3 T33: 0.0383 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0383 REMARK 3 T33: 0.0383 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0383 REMARK 3 T33: 0.0383 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3M7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0718 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : DOUBLE-CRYSTAL, SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE 2.13, RESOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG3K, 2.5% ETHYLENE GLYCOL, 10 MM REMARK 280 MGSO4, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.16100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.16100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.54450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.46350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.54450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.46350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.16100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.54450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.46350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.16100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.54450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.46350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE DIMERIC ASSEMBLY IS GENERATED BY THE REMARK 300 TWO FOLD OPERATOR -X+1, Y, -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -325.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 37.08900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.16100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 48 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 11 P DT C 11 OP3 -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 3 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG B 3 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC B 5 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG C 14 C1' - O4' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -133.45 47.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 144 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 7 SG 103.6 REMARK 620 3 CYS A 24 SG 112.0 112.1 REMARK 620 4 CYS A 27 SG 113.1 105.2 110.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT A 146 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 23 SD REMARK 620 2 MET A 28 SD 93.1 REMARK 620 3 HOH C 102 O 105.6 150.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 148 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 60 O REMARK 620 2 SO4 A 156 O1 59.9 REMARK 620 3 HOH A 213 O 151.6 144.0 REMARK 620 4 HOH A 219 O 70.6 123.8 91.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 143 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 CYS A 66 SG 103.8 REMARK 620 3 CYS A 109 SG 115.1 115.6 REMARK 620 4 CYS A 112 SG 106.2 108.8 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 145 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD1 REMARK 620 2 ASN A 113 OD1 91.7 REMARK 620 3 HOH A 157 O 94.3 86.8 REMARK 620 4 HOH A 160 O 80.5 172.1 94.8 REMARK 620 5 HOH C 7 O 108.1 92.4 157.5 89.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 153 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 127 O REMARK 620 2 GLU A 130 OE1 80.6 REMARK 620 3 HOH A 202 O 122.2 108.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 150 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 198 O REMARK 620 2 HOH A 225 O 65.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 151 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 237 O REMARK 620 2 HOH A 245 O 65.7 REMARK 620 3 HOH A 246 O 152.4 87.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 152 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 221 O REMARK 620 2 HOH A 231 O 120.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 6 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 162 O REMARK 620 2 HOH C 5 O 121.6 REMARK 620 3 HOH C 36 O 93.8 98.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PT A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 156 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LDY RELATED DB: PDB REMARK 900 THE SAME PROTEIN-DNA COMPLEX, UNCLEAVED DBREF 3M7K A 1 142 PDB 3M7K 3M7K 1 142 DBREF 3M7K B 1 10 PDB 3M7K 3M7K 1 10 DBREF 3M7K C 11 18 PDB 3M7K 3M7K 11 18 SEQRES 1 A 142 MET THR GLN CYS PRO ARG CYS GLN ARG ASN LEU ALA ALA SEQRES 2 A 142 ASP GLU PHE TYR ALA GLY SER SER LYS MET CYS LYS GLY SEQRES 3 A 142 CYS MET THR TRP GLN ASN LEU SER TYR ASN ALA ASN LYS SEQRES 4 A 142 GLU GLY HIS ALA ASN THR PHE THR LYS ALA THR PHE LEU SEQRES 5 A 142 ALA TRP TYR GLY LEU SER ALA GLN ARG HIS CYS GLY TYR SEQRES 6 A 142 CYS GLY ILE SER GLU ALA GLY PHE THR SER LEU HIS ARG SEQRES 7 A 142 THR ASN PRO ARG GLY TYR HIS ILE GLN CYS LEU GLY VAL SEQRES 8 A 142 ASP ARG SER ASP SER PHE GLU GLY TYR SER PRO GLN ASN SEQRES 9 A 142 ALA ARG LEU ALA CYS PHE ILE CYS ASN ARG ILE LYS SER SEQRES 10 A 142 ASN ILE PHE SER ALA SER GLU MET ASP VAL LEU GLY GLU SEQRES 11 A 142 ALA ILE SER LYS ALA TRP HIS GLY ARG GLY ILE ALA SEQRES 1 B 10 DG DA DG DG DC DT DT DA DA DT SEQRES 1 C 8 DT DA DA DG DC DC DT DC HET ZN A 143 1 HET ZN A 144 1 HET MG A 145 1 HET PT A 146 1 HET NA A 147 1 HET NA A 148 1 HET NA A 149 1 HET NA A 150 1 HET NA A 151 1 HET NA A 152 1 HET NA A 153 1 HET EDO A 154 4 HET SO4 A 155 5 HET SO4 A 156 5 HET NA B 11 1 HET NA C 6 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM PT PLATINUM (II) ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN 2(ZN 2+) FORMUL 6 MG MG 2+ FORMUL 7 PT PT 2+ FORMUL 8 NA 9(NA 1+) FORMUL 15 EDO C2 H6 O2 FORMUL 16 SO4 2(O4 S 2-) FORMUL 20 HOH *114(H2 O) HELIX 1 1 ALA A 12 PHE A 16 5 5 HELIX 2 2 CYS A 24 GLY A 41 1 18 HELIX 3 3 THR A 47 GLY A 56 1 10 HELIX 4 4 LEU A 57 ARG A 61 5 5 HELIX 5 5 SER A 69 SER A 75 1 7 HELIX 6 6 CYS A 109 SER A 117 1 9 HELIX 7 7 SER A 121 ARG A 139 1 19 SHEET 1 A 2 THR A 2 GLN A 3 0 SHEET 2 A 2 ASN A 10 LEU A 11 -1 O LEU A 11 N THR A 2 SHEET 1 B 2 GLY A 90 ARG A 93 0 SHEET 2 B 2 ALA A 105 ALA A 108 -1 O ARG A 106 N ASP A 92 LINK SG CYS A 4 ZN ZN A 144 1555 1555 2.28 LINK SG CYS A 7 ZN ZN A 144 1555 1555 2.45 LINK SD MET A 23 PT PT A 146 1555 1555 2.01 LINK SG CYS A 24 ZN ZN A 144 1555 1555 2.31 LINK SG CYS A 27 ZN ZN A 144 1555 1555 2.30 LINK SD MET A 28 PT PT A 146 1555 1555 2.10 LINK O GLN A 60 NA NA A 148 1555 1555 3.13 LINK SG CYS A 63 ZN ZN A 143 1555 1555 2.41 LINK SG CYS A 66 ZN ZN A 143 1555 1555 2.29 LINK OD1 ASP A 92 MG MG A 145 1555 1555 2.37 LINK SG CYS A 109 ZN ZN A 143 1555 1555 2.34 LINK SG CYS A 112 ZN ZN A 143 1555 1555 2.35 LINK OD1 ASN A 113 MG MG A 145 1555 1555 2.33 LINK O VAL A 127 NA NA A 153 1555 1555 2.94 LINK OE1BGLU A 130 NA NA A 153 1555 1555 3.17 LINK MG MG A 145 O HOH A 157 1555 1555 2.37 LINK MG MG A 145 O HOH A 160 1555 1555 2.31 LINK MG MG A 145 O HOH C 7 1555 1555 2.78 LINK PT PT A 146 O HOH C 102 1555 1555 2.72 LINK NA NA A 147 O HOH A 244 1555 1555 2.32 LINK NA NA A 148 O1 SO4 A 156 1555 1555 2.55 LINK NA NA A 148 O HOH A 213 1555 1555 3.06 LINK NA NA A 148 O HOH A 219 1555 1555 2.52 LINK NA NA A 149 O HOH A 211 1555 1555 2.41 LINK NA NA A 150 O HOH A 198 1555 1555 3.09 LINK NA NA A 150 O HOH A 225 1555 1555 2.42 LINK NA NA A 151 O HOH A 237 1555 1555 2.12 LINK NA NA A 151 O HOH A 245 1555 1555 2.75 LINK NA NA A 151 O HOH A 246 1555 1555 1.98 LINK NA NA A 152 O HOH A 221 1555 1555 2.55 LINK NA NA A 152 O HOH A 231 1555 1555 2.34 LINK NA NA A 153 O HOH A 202 1555 1555 2.66 LINK O HOH A 162 NA NA C 6 1555 1555 2.21 LINK O HOH A 171 NA NA B 11 1555 1555 2.44 LINK O HOH C 5 NA NA C 6 1555 1555 3.03 LINK NA NA C 6 O HOH C 36 1555 1555 2.10 SITE 1 AC1 4 CYS A 63 CYS A 66 CYS A 109 CYS A 112 SITE 1 AC2 4 CYS A 4 CYS A 7 CYS A 24 CYS A 27 SITE 1 AC3 6 ASP A 92 ASN A 113 HOH A 157 HOH A 160 SITE 2 AC3 6 DT B 10 HOH C 7 SITE 1 AC4 4 MET A 23 MET A 28 DG C 14 HOH C 102 SITE 1 AC5 2 HIS A 77 HOH A 244 SITE 1 AC6 4 HOH A 162 HOH C 5 DA C 12 HOH C 36 SITE 1 AC7 2 HOH A 171 DA B 8 SITE 1 AC8 5 GLN A 60 HIS A 62 SO4 A 156 HOH A 213 SITE 2 AC8 5 HOH A 219 SITE 1 AC9 1 HOH A 211 SITE 1 BC1 4 ALA A 12 THR A 50 HOH A 198 HOH A 225 SITE 1 BC2 4 HIS A 85 HOH A 237 HOH A 245 HOH A 246 SITE 1 BC3 2 HOH A 221 HOH A 231 SITE 1 BC4 3 VAL A 127 GLU A 130 HOH A 202 SITE 1 BC5 4 ILE A 119 SER A 121 ARG A 139 HOH A 172 SITE 1 BC6 3 HOH A 213 HOH A 216 HOH A 238 SITE 1 BC7 6 MET A 1 TRP A 54 TYR A 55 GLN A 60 SITE 2 BC7 6 ARG A 61 NA A 148 CRYST1 37.089 114.927 114.322 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026962 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008747 0.00000