HEADER ISOMERASE 17-MAR-10 3M7V TITLE CRYSTAL STRUCTURE OF PHOSPHOPENTOMUTASE FROM STREPTOCOCCUS MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPENTOMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHODEOXYRIBOMUTASE; COMPND 5 EC: 5.4.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 GENE: DEOB, SMU_1233; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NYSGRC, CYTOPLASM, ISOMERASE, MANGANESE, METAL- KEYWDS 2 BINDING, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,J.BONANNO,E.V.FEDOROV,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 21-FEB-24 3M7V 1 REMARK REVDAT 3 10-FEB-21 3M7V 1 AUTHOR JRNL REMARK LINK REVDAT 2 16-JUN-10 3M7V 1 SPRSDE REVDAT 1 07-APR-10 3M7V 0 SPRSDE 16-JUN-10 3M7V 2I09 JRNL AUTH A.A.FEDOROV,J.BONANNO,E.V.FEDOROV,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PHOSPHOPENTOMUTASE FROM STREPTOCOCCUS JRNL TITL 2 MUTANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 56682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3975 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.74000 REMARK 3 B22 (A**2) : 1.89000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.393 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6294 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4140 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8574 ; 1.375 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10115 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 804 ; 6.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;38.437 ;24.107 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 973 ;14.276 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.939 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 966 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7120 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1265 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3988 ; 0.659 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1630 ; 0.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6434 ; 1.143 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2306 ; 1.902 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2138 ; 2.924 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4311 31.3038 18.9547 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0459 REMARK 3 T33: 0.0872 T12: -0.0033 REMARK 3 T13: 0.0037 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.7939 L22: 0.6140 REMARK 3 L33: 1.2897 L12: 0.0548 REMARK 3 L13: -0.2369 L23: -0.2601 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: -0.1680 S13: 0.3133 REMARK 3 S21: 0.0842 S22: 0.0139 S23: -0.0289 REMARK 3 S31: -0.2519 S32: 0.0670 S33: -0.0710 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 403 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0883 15.3613 33.0492 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.0352 REMARK 3 T33: 0.0358 T12: -0.0055 REMARK 3 T13: -0.0148 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.4833 L22: 0.9114 REMARK 3 L33: 1.1274 L12: 0.2253 REMARK 3 L13: -0.6299 L23: -0.3769 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: -0.1101 S13: 0.0698 REMARK 3 S21: 0.2057 S22: -0.0348 S23: 0.0259 REMARK 3 S31: -0.0806 S32: -0.0130 S33: 0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.1M BIS-TRIS, 0.2M REMARK 280 LITHIUM SULFATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.84350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 SER A 2 REMARK 465 GLU A 404 REMARK 465 GLY A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 SER B 2 REMARK 465 GLU B 404 REMARK 465 GLY B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 465 HIS B 409 REMARK 465 HIS B 410 REMARK 465 HIS B 411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 3 OG1 CG2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ILE A 145 CG1 CG2 CD1 REMARK 470 ASN A 214 CG OD1 ND2 REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 THR B 3 OG1 CG2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 ILE B 145 CG1 CG2 CD1 REMARK 470 GLU B 154 CG CD OE1 OE2 REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 214 CG OD1 ND2 REMARK 470 LYS B 278 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 6.01 85.36 REMARK 500 ASP A 37 87.18 -175.38 REMARK 500 LEU A 48 109.57 -165.57 REMARK 500 THR A 81 -168.42 -166.24 REMARK 500 ARG A 206 77.26 -118.28 REMARK 500 ASN A 214 61.24 -174.42 REMARK 500 HIS A 340 -174.51 172.55 REMARK 500 ASN A 342 73.73 -162.64 REMARK 500 THR A 349 20.24 -140.85 REMARK 500 ALA A 392 -121.92 -92.59 REMARK 500 SER B 14 6.79 86.49 REMARK 500 ASP B 37 93.38 -170.71 REMARK 500 LEU B 48 114.12 -163.11 REMARK 500 THR B 81 -167.98 -163.24 REMARK 500 ARG B 213 -32.35 84.21 REMARK 500 HIS B 340 -175.07 176.64 REMARK 500 ASN B 342 79.38 -160.01 REMARK 500 THR B 349 21.52 -140.33 REMARK 500 ALA B 392 -119.57 -92.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 412 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD2 REMARK 620 2 ASP A 13 OD1 55.3 REMARK 620 3 ASP A 339 OD2 119.7 86.9 REMARK 620 4 HIS A 340 NE2 103.7 156.1 96.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 413 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 298 OD1 REMARK 620 2 HIS A 303 NE2 106.3 REMARK 620 3 HIS A 351 NE2 117.4 99.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 412 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 13 OD2 REMARK 620 2 ASP B 13 OD1 54.2 REMARK 620 3 ASP B 339 OD2 118.3 84.0 REMARK 620 4 HIS B 340 NE2 101.6 153.0 100.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 413 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 298 OD1 REMARK 620 2 HIS B 303 NE2 104.8 REMARK 620 3 HIS B 351 NE2 113.3 100.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-6197F RELATED DB: TARGETDB DBREF 3M7V A 2 403 UNP Q8DTU0 DEOB_STRMU 2 403 DBREF 3M7V B 2 403 UNP Q8DTU0 DEOB_STRMU 2 403 SEQADV 3M7V MET A -1 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V SER A 0 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V LEU A 1 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V GLU A 404 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V GLY A 405 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS A 406 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS A 407 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS A 408 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS A 409 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS A 410 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS A 411 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V MET B -1 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V SER B 0 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V LEU B 1 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V GLU B 404 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V GLY B 405 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS B 406 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS B 407 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS B 408 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS B 409 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS B 410 UNP Q8DTU0 EXPRESSION TAG SEQADV 3M7V HIS B 411 UNP Q8DTU0 EXPRESSION TAG SEQRES 1 A 413 MET SER LEU SER THR PHE ASN ARG ILE HIS LEU VAL VAL SEQRES 2 A 413 LEU ASP SER VAL GLY ILE GLY ALA ALA PRO ASP ALA ASN SEQRES 3 A 413 ASN PHE SER ASN ALA GLY VAL PRO ASP GLY ALA SER ASP SEQRES 4 A 413 THR LEU GLY HIS ILE SER LYS THR VAL GLY LEU ASN VAL SEQRES 5 A 413 PRO ASN MET ALA LYS ILE GLY LEU GLY ASN ILE PRO ARG SEQRES 6 A 413 ASP THR PRO LEU LYS THR VAL PRO ALA GLU ASN HIS PRO SEQRES 7 A 413 THR GLY TYR VAL THR LYS LEU GLU GLU VAL SER LEU GLY SEQRES 8 A 413 LYS ASP THR MET THR GLY HIS TRP GLU ILE MET GLY LEU SEQRES 9 A 413 ASN ILE THR GLU PRO PHE ASP THR PHE TRP ASN GLY PHE SEQRES 10 A 413 PRO GLU GLU ILE ILE SER LYS ILE GLU LYS PHE SER GLY SEQRES 11 A 413 ARG LYS VAL ILE ARG GLU ALA ASN LYS PRO TYR SER GLY SEQRES 12 A 413 THR ALA VAL ILE ASP ASP PHE GLY PRO ARG GLN MET GLU SEQRES 13 A 413 THR GLY GLU LEU ILE ILE TYR THR SER ALA ASP PRO VAL SEQRES 14 A 413 LEU GLN ILE ALA ALA HIS GLU ASP VAL ILE PRO LEU ASP SEQRES 15 A 413 GLU LEU TYR ARG ILE CYS GLU TYR ALA ARG SER ILE THR SEQRES 16 A 413 LEU GLU ARG PRO ALA LEU LEU GLY ARG ILE ILE ALA ARG SEQRES 17 A 413 PRO TYR VAL GLY LYS PRO ARG ASN PHE THR ARG THR ALA SEQRES 18 A 413 ASN ARG HIS ASP TYR ALA LEU SER PRO PHE ALA PRO THR SEQRES 19 A 413 VAL LEU ASN LYS LEU ALA ASP ALA GLY VAL SER THR TYR SEQRES 20 A 413 ALA VAL GLY LYS ILE ASN ASP ILE PHE ASN GLY SER GLY SEQRES 21 A 413 ILE THR ASN ASP MET GLY HIS ASN LYS SER ASN SER HIS SEQRES 22 A 413 GLY VAL ASP THR LEU ILE LYS THR MET GLY LEU SER ALA SEQRES 23 A 413 PHE THR LYS GLY PHE SER PHE THR ASN LEU VAL ASP PHE SEQRES 24 A 413 ASP ALA LEU TYR GLY HIS ARG ARG ASN ALA HIS GLY TYR SEQRES 25 A 413 ARG ASP CYS LEU HIS GLU PHE ASP GLU ARG LEU PRO GLU SEQRES 26 A 413 ILE ILE ALA ALA MET LYS VAL ASP ASP LEU LEU LEU ILE SEQRES 27 A 413 THR ALA ASP HIS GLY ASN ASP PRO THR TYR ALA GLY THR SEQRES 28 A 413 ASP HIS THR ARG GLU TYR VAL PRO LEU LEU ALA TYR SER SEQRES 29 A 413 PRO SER PHE THR GLY ASN GLY VAL LEU PRO VAL GLY HIS SEQRES 30 A 413 TYR ALA ASP ILE SER ALA THR ILE ALA ASP ASN PHE GLY SEQRES 31 A 413 VAL ASP THR ALA MET ILE GLY GLU SER PHE LEU ASP LYS SEQRES 32 A 413 LEU ILE GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 413 MET SER LEU SER THR PHE ASN ARG ILE HIS LEU VAL VAL SEQRES 2 B 413 LEU ASP SER VAL GLY ILE GLY ALA ALA PRO ASP ALA ASN SEQRES 3 B 413 ASN PHE SER ASN ALA GLY VAL PRO ASP GLY ALA SER ASP SEQRES 4 B 413 THR LEU GLY HIS ILE SER LYS THR VAL GLY LEU ASN VAL SEQRES 5 B 413 PRO ASN MET ALA LYS ILE GLY LEU GLY ASN ILE PRO ARG SEQRES 6 B 413 ASP THR PRO LEU LYS THR VAL PRO ALA GLU ASN HIS PRO SEQRES 7 B 413 THR GLY TYR VAL THR LYS LEU GLU GLU VAL SER LEU GLY SEQRES 8 B 413 LYS ASP THR MET THR GLY HIS TRP GLU ILE MET GLY LEU SEQRES 9 B 413 ASN ILE THR GLU PRO PHE ASP THR PHE TRP ASN GLY PHE SEQRES 10 B 413 PRO GLU GLU ILE ILE SER LYS ILE GLU LYS PHE SER GLY SEQRES 11 B 413 ARG LYS VAL ILE ARG GLU ALA ASN LYS PRO TYR SER GLY SEQRES 12 B 413 THR ALA VAL ILE ASP ASP PHE GLY PRO ARG GLN MET GLU SEQRES 13 B 413 THR GLY GLU LEU ILE ILE TYR THR SER ALA ASP PRO VAL SEQRES 14 B 413 LEU GLN ILE ALA ALA HIS GLU ASP VAL ILE PRO LEU ASP SEQRES 15 B 413 GLU LEU TYR ARG ILE CYS GLU TYR ALA ARG SER ILE THR SEQRES 16 B 413 LEU GLU ARG PRO ALA LEU LEU GLY ARG ILE ILE ALA ARG SEQRES 17 B 413 PRO TYR VAL GLY LYS PRO ARG ASN PHE THR ARG THR ALA SEQRES 18 B 413 ASN ARG HIS ASP TYR ALA LEU SER PRO PHE ALA PRO THR SEQRES 19 B 413 VAL LEU ASN LYS LEU ALA ASP ALA GLY VAL SER THR TYR SEQRES 20 B 413 ALA VAL GLY LYS ILE ASN ASP ILE PHE ASN GLY SER GLY SEQRES 21 B 413 ILE THR ASN ASP MET GLY HIS ASN LYS SER ASN SER HIS SEQRES 22 B 413 GLY VAL ASP THR LEU ILE LYS THR MET GLY LEU SER ALA SEQRES 23 B 413 PHE THR LYS GLY PHE SER PHE THR ASN LEU VAL ASP PHE SEQRES 24 B 413 ASP ALA LEU TYR GLY HIS ARG ARG ASN ALA HIS GLY TYR SEQRES 25 B 413 ARG ASP CYS LEU HIS GLU PHE ASP GLU ARG LEU PRO GLU SEQRES 26 B 413 ILE ILE ALA ALA MET LYS VAL ASP ASP LEU LEU LEU ILE SEQRES 27 B 413 THR ALA ASP HIS GLY ASN ASP PRO THR TYR ALA GLY THR SEQRES 28 B 413 ASP HIS THR ARG GLU TYR VAL PRO LEU LEU ALA TYR SER SEQRES 29 B 413 PRO SER PHE THR GLY ASN GLY VAL LEU PRO VAL GLY HIS SEQRES 30 B 413 TYR ALA ASP ILE SER ALA THR ILE ALA ASP ASN PHE GLY SEQRES 31 B 413 VAL ASP THR ALA MET ILE GLY GLU SER PHE LEU ASP LYS SEQRES 32 B 413 LEU ILE GLU GLY HIS HIS HIS HIS HIS HIS HET MN A 412 1 HET MN A 413 1 HET GOL A 414 6 HET MN B 412 1 HET MN B 413 1 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 4(MN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *315(H2 O) HELIX 1 1 ASP A 22 ASN A 25 5 4 HELIX 2 2 GLY A 34 SER A 36 5 3 HELIX 3 3 ASP A 37 VAL A 46 1 10 HELIX 4 4 VAL A 50 GLY A 57 1 8 HELIX 5 5 LEU A 58 ILE A 61 5 4 HELIX 6 6 ASP A 91 MET A 100 1 10 HELIX 7 7 PRO A 116 GLY A 128 1 13 HELIX 8 8 ILE A 132 ASN A 136 5 5 HELIX 9 9 SER A 140 GLY A 156 1 17 HELIX 10 10 PRO A 178 ILE A 192 1 15 HELIX 11 11 THR A 232 ALA A 240 1 9 HELIX 12 12 LYS A 249 ASN A 255 1 7 HELIX 13 13 SER A 268 GLY A 281 1 14 HELIX 14 14 VAL A 295 TYR A 301 1 7 HELIX 15 15 ASN A 306 ALA A 327 1 22 HELIX 16 16 ALA A 377 GLY A 388 1 12 HELIX 17 17 PHE A 398 ILE A 403 1 6 HELIX 18 18 ASP B 22 ASN B 25 5 4 HELIX 19 19 GLY B 34 SER B 36 5 3 HELIX 20 20 ASP B 37 GLY B 47 1 11 HELIX 21 21 VAL B 50 GLY B 57 1 8 HELIX 22 22 LEU B 58 ILE B 61 5 4 HELIX 23 23 ASP B 91 MET B 100 1 10 HELIX 24 24 PRO B 116 GLY B 128 1 13 HELIX 25 25 ILE B 132 ASN B 136 5 5 HELIX 26 26 SER B 140 GLY B 156 1 17 HELIX 27 27 PRO B 178 ILE B 192 1 15 HELIX 28 28 THR B 232 ALA B 240 1 9 HELIX 29 29 LYS B 249 PHE B 254 1 6 HELIX 30 30 SER B 268 LEU B 282 1 15 HELIX 31 31 VAL B 295 TYR B 301 1 7 HELIX 32 32 ASN B 306 MET B 328 1 23 HELIX 33 33 ALA B 377 GLY B 388 1 12 HELIX 34 34 PHE B 398 ILE B 403 1 6 SHEET 1 A 8 ASN A 261 ASP A 262 0 SHEET 2 A 8 SER A 243 VAL A 247 1 N ALA A 246 O ASN A 261 SHEET 3 A 8 GLY A 288 LEU A 294 1 O PHE A 289 N TYR A 245 SHEET 4 A 8 ARG A 6 LEU A 12 1 N VAL A 11 O THR A 292 SHEET 5 A 8 ASP A 332 THR A 337 1 O LEU A 335 N VAL A 10 SHEET 6 A 8 VAL A 356 TYR A 361 -1 O TYR A 361 N LEU A 334 SHEET 7 A 8 TYR A 79 GLU A 84 -1 N LEU A 83 O VAL A 356 SHEET 8 A 8 GLY A 369 VAL A 370 1 O GLY A 369 N VAL A 80 SHEET 1 B 8 ASN A 261 ASP A 262 0 SHEET 2 B 8 SER A 243 VAL A 247 1 N ALA A 246 O ASN A 261 SHEET 3 B 8 GLY A 288 LEU A 294 1 O PHE A 289 N TYR A 245 SHEET 4 B 8 ARG A 6 LEU A 12 1 N VAL A 11 O THR A 292 SHEET 5 B 8 ASP A 332 THR A 337 1 O LEU A 335 N VAL A 10 SHEET 6 B 8 VAL A 356 TYR A 361 -1 O TYR A 361 N LEU A 334 SHEET 7 B 8 TYR A 79 GLU A 84 -1 N LEU A 83 O VAL A 356 SHEET 8 B 8 GLY A 374 HIS A 375 1 O GLY A 374 N LYS A 82 SHEET 1 C 2 SER A 27 ASN A 28 0 SHEET 2 C 2 VAL A 31 PRO A 32 -1 O VAL A 31 N ASN A 28 SHEET 1 D 4 ILE A 159 TYR A 161 0 SHEET 2 D 4 VAL A 167 HIS A 173 -1 O GLN A 169 N TYR A 161 SHEET 3 D 4 ARG A 202 LYS A 211 1 O ARG A 206 N ILE A 170 SHEET 4 D 4 ASN A 214 THR A 216 -1 O THR A 216 N VAL A 209 SHEET 1 E 4 ILE A 159 TYR A 161 0 SHEET 2 E 4 VAL A 167 HIS A 173 -1 O GLN A 169 N TYR A 161 SHEET 3 E 4 ARG A 202 LYS A 211 1 O ARG A 206 N ILE A 170 SHEET 4 E 4 HIS A 222 ALA A 225 -1 O HIS A 222 N ALA A 205 SHEET 1 F 8 ASN B 261 ASP B 262 0 SHEET 2 F 8 THR B 244 VAL B 247 1 N THR B 244 O ASN B 261 SHEET 3 F 8 GLY B 288 LEU B 294 1 O PHE B 289 N TYR B 245 SHEET 4 F 8 ARG B 6 LEU B 12 1 N VAL B 11 O THR B 292 SHEET 5 F 8 ASP B 332 THR B 337 1 O LEU B 335 N HIS B 8 SHEET 6 F 8 VAL B 356 TYR B 361 -1 O TYR B 361 N LEU B 334 SHEET 7 F 8 TYR B 79 GLU B 84 -1 N LEU B 83 O VAL B 356 SHEET 8 F 8 GLY B 369 VAL B 370 1 O GLY B 369 N VAL B 80 SHEET 1 G 8 ASN B 261 ASP B 262 0 SHEET 2 G 8 THR B 244 VAL B 247 1 N THR B 244 O ASN B 261 SHEET 3 G 8 GLY B 288 LEU B 294 1 O PHE B 289 N TYR B 245 SHEET 4 G 8 ARG B 6 LEU B 12 1 N VAL B 11 O THR B 292 SHEET 5 G 8 ASP B 332 THR B 337 1 O LEU B 335 N HIS B 8 SHEET 6 G 8 VAL B 356 TYR B 361 -1 O TYR B 361 N LEU B 334 SHEET 7 G 8 TYR B 79 GLU B 84 -1 N LEU B 83 O VAL B 356 SHEET 8 G 8 GLY B 374 HIS B 375 1 O GLY B 374 N LYS B 82 SHEET 1 H 2 SER B 27 ASN B 28 0 SHEET 2 H 2 VAL B 31 PRO B 32 -1 O VAL B 31 N ASN B 28 SHEET 1 I 4 ILE B 159 TYR B 161 0 SHEET 2 I 4 VAL B 167 HIS B 173 -1 O GLN B 169 N TYR B 161 SHEET 3 I 4 ARG B 202 LYS B 211 1 O ILE B 204 N LEU B 168 SHEET 4 I 4 ASN B 214 ARG B 217 -1 O THR B 216 N VAL B 209 SHEET 1 J 4 ILE B 159 TYR B 161 0 SHEET 2 J 4 VAL B 167 HIS B 173 -1 O GLN B 169 N TYR B 161 SHEET 3 J 4 ARG B 202 LYS B 211 1 O ILE B 204 N LEU B 168 SHEET 4 J 4 HIS B 222 ALA B 225 -1 O HIS B 222 N ALA B 205 SHEET 1 K 2 LEU B 194 GLU B 195 0 SHEET 2 K 2 ALA B 198 LEU B 199 -1 O ALA B 198 N GLU B 195 LINK OD2 ASP A 13 MN MN A 412 1555 1555 1.95 LINK OD1 ASP A 13 MN MN A 412 1555 1555 2.64 LINK OD1 ASP A 298 MN MN A 413 1555 1555 1.99 LINK NE2 HIS A 303 MN MN A 413 1555 1555 2.18 LINK OD2 ASP A 339 MN MN A 412 1555 1555 2.01 LINK NE2 HIS A 340 MN MN A 412 1555 1555 2.12 LINK NE2 HIS A 351 MN MN A 413 1555 1555 1.99 LINK OD2 ASP B 13 MN MN B 412 1555 1555 2.02 LINK OD1 ASP B 13 MN MN B 412 1555 1555 2.70 LINK OD1 ASP B 298 MN MN B 413 1555 1555 2.02 LINK NE2 HIS B 303 MN MN B 413 1555 1555 2.05 LINK OD2 ASP B 339 MN MN B 412 1555 1555 1.97 LINK NE2 HIS B 340 MN MN B 412 1555 1555 2.10 LINK NE2 HIS B 351 MN MN B 413 1555 1555 2.11 CISPEP 1 ARG A 196 PRO A 197 0 6.33 CISPEP 2 ARG B 196 PRO B 197 0 9.76 SITE 1 AC1 3 ASP B 13 ASP B 339 HIS B 340 SITE 1 AC2 4 ASP A 13 THR A 92 ASP A 339 HIS A 340 SITE 1 AC3 3 ASP A 298 HIS A 303 HIS A 351 SITE 1 AC4 3 ASP B 298 HIS B 303 HIS B 351 SITE 1 AC5 5 HIS A 41 LYS A 44 HOH A 487 HIS B 41 SITE 2 AC5 5 LYS B 44 CRYST1 69.788 63.687 104.765 90.00 98.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014329 0.000000 0.002231 0.00000 SCALE2 0.000000 0.015702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009660 0.00000