data_3M92 # _entry.id 3M92 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3M92 RCSB RCSB058261 WWPDB D_1000058261 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc27530 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3M92 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Xu, X.' 2 'Cui, H.' 3 'Chin, S.' 4 'Savchenko, A.' 5 'Edwards, A.' 6 'Joachimiak, A.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'The structure of yciN, an unchracterized protein from Shigella flexneri.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Xu, X.' 2 primary 'Cui, H.' 3 primary 'Chin, S.' 4 primary 'Savchenko, A.' 5 primary 'Edwards, A.' 6 primary 'Joachimiak, A.' 7 # _cell.length_a 56.35 _cell.length_b 56.35 _cell.length_c 132.26 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3M92 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3M92 _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein yciN' 12253.174 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 91 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSSGRENLYFQGH(MSE)NKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYF LDEQGLPTAKSTAVFN(MSE)FKHLAHVLSEKYHLVDGS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGRENLYFQGHMNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPT AKSTAVFNMFKHLAHVLSEKYHLVDGS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier apc27530 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 ARG n 1 15 GLU n 1 16 ASN n 1 17 LEU n 1 18 TYR n 1 19 PHE n 1 20 GLN n 1 21 GLY n 1 22 HIS n 1 23 MSE n 1 24 ASN n 1 25 LYS n 1 26 GLU n 1 27 THR n 1 28 GLN n 1 29 PRO n 1 30 ILE n 1 31 ASP n 1 32 ARG n 1 33 GLU n 1 34 THR n 1 35 LEU n 1 36 LEU n 1 37 LYS n 1 38 GLU n 1 39 ALA n 1 40 ASN n 1 41 LYS n 1 42 ILE n 1 43 ILE n 1 44 ARG n 1 45 GLU n 1 46 HIS n 1 47 GLU n 1 48 ASP n 1 49 THR n 1 50 LEU n 1 51 ALA n 1 52 GLY n 1 53 ILE n 1 54 GLU n 1 55 ALA n 1 56 THR n 1 57 GLY n 1 58 VAL n 1 59 THR n 1 60 GLN n 1 61 ARG n 1 62 ASN n 1 63 GLY n 1 64 VAL n 1 65 LEU n 1 66 VAL n 1 67 PHE n 1 68 THR n 1 69 GLY n 1 70 ASP n 1 71 TYR n 1 72 PHE n 1 73 LEU n 1 74 ASP n 1 75 GLU n 1 76 GLN n 1 77 GLY n 1 78 LEU n 1 79 PRO n 1 80 THR n 1 81 ALA n 1 82 LYS n 1 83 SER n 1 84 THR n 1 85 ALA n 1 86 VAL n 1 87 PHE n 1 88 ASN n 1 89 MSE n 1 90 PHE n 1 91 LYS n 1 92 HIS n 1 93 LEU n 1 94 ALA n 1 95 HIS n 1 96 VAL n 1 97 LEU n 1 98 SER n 1 99 GLU n 1 100 LYS n 1 101 TYR n 1 102 HIS n 1 103 LEU n 1 104 VAL n 1 105 ASP n 1 106 GLY n 1 107 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'S1360, SF1275, yciN' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 2457T _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shigella flexneri 2a' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 198215 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'modified BL21' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YCIN_SHIFL _struct_ref.pdbx_db_accession P0AB64 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYH LVD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3M92 A 23 ? 105 ? P0AB64 1 ? 83 ? 1 83 2 1 3M92 B 23 ? 105 ? P0AB64 1 ? 83 ? 1 83 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3M92 MSE A 1 ? UNP P0AB64 ? ? 'expression tag' -21 1 1 3M92 GLY A 2 ? UNP P0AB64 ? ? 'expression tag' -20 2 1 3M92 SER A 3 ? UNP P0AB64 ? ? 'expression tag' -19 3 1 3M92 SER A 4 ? UNP P0AB64 ? ? 'expression tag' -18 4 1 3M92 HIS A 5 ? UNP P0AB64 ? ? 'expression tag' -17 5 1 3M92 HIS A 6 ? UNP P0AB64 ? ? 'expression tag' -16 6 1 3M92 HIS A 7 ? UNP P0AB64 ? ? 'expression tag' -15 7 1 3M92 HIS A 8 ? UNP P0AB64 ? ? 'expression tag' -14 8 1 3M92 HIS A 9 ? UNP P0AB64 ? ? 'expression tag' -13 9 1 3M92 HIS A 10 ? UNP P0AB64 ? ? 'expression tag' -12 10 1 3M92 SER A 11 ? UNP P0AB64 ? ? 'expression tag' -11 11 1 3M92 SER A 12 ? UNP P0AB64 ? ? 'expression tag' -10 12 1 3M92 GLY A 13 ? UNP P0AB64 ? ? 'expression tag' -9 13 1 3M92 ARG A 14 ? UNP P0AB64 ? ? 'expression tag' -8 14 1 3M92 GLU A 15 ? UNP P0AB64 ? ? 'expression tag' -7 15 1 3M92 ASN A 16 ? UNP P0AB64 ? ? 'expression tag' -6 16 1 3M92 LEU A 17 ? UNP P0AB64 ? ? 'expression tag' -5 17 1 3M92 TYR A 18 ? UNP P0AB64 ? ? 'expression tag' -4 18 1 3M92 PHE A 19 ? UNP P0AB64 ? ? 'expression tag' -3 19 1 3M92 GLN A 20 ? UNP P0AB64 ? ? 'expression tag' -2 20 1 3M92 GLY A 21 ? UNP P0AB64 ? ? 'expression tag' -1 21 1 3M92 HIS A 22 ? UNP P0AB64 ? ? 'expression tag' 0 22 1 3M92 GLY A 106 ? UNP P0AB64 ? ? 'expression tag' 84 23 1 3M92 SER A 107 ? UNP P0AB64 ? ? 'expression tag' 85 24 2 3M92 MSE B 1 ? UNP P0AB64 ? ? 'expression tag' -21 25 2 3M92 GLY B 2 ? UNP P0AB64 ? ? 'expression tag' -20 26 2 3M92 SER B 3 ? UNP P0AB64 ? ? 'expression tag' -19 27 2 3M92 SER B 4 ? UNP P0AB64 ? ? 'expression tag' -18 28 2 3M92 HIS B 5 ? UNP P0AB64 ? ? 'expression tag' -17 29 2 3M92 HIS B 6 ? UNP P0AB64 ? ? 'expression tag' -16 30 2 3M92 HIS B 7 ? UNP P0AB64 ? ? 'expression tag' -15 31 2 3M92 HIS B 8 ? UNP P0AB64 ? ? 'expression tag' -14 32 2 3M92 HIS B 9 ? UNP P0AB64 ? ? 'expression tag' -13 33 2 3M92 HIS B 10 ? UNP P0AB64 ? ? 'expression tag' -12 34 2 3M92 SER B 11 ? UNP P0AB64 ? ? 'expression tag' -11 35 2 3M92 SER B 12 ? UNP P0AB64 ? ? 'expression tag' -10 36 2 3M92 GLY B 13 ? UNP P0AB64 ? ? 'expression tag' -9 37 2 3M92 ARG B 14 ? UNP P0AB64 ? ? 'expression tag' -8 38 2 3M92 GLU B 15 ? UNP P0AB64 ? ? 'expression tag' -7 39 2 3M92 ASN B 16 ? UNP P0AB64 ? ? 'expression tag' -6 40 2 3M92 LEU B 17 ? UNP P0AB64 ? ? 'expression tag' -5 41 2 3M92 TYR B 18 ? UNP P0AB64 ? ? 'expression tag' -4 42 2 3M92 PHE B 19 ? UNP P0AB64 ? ? 'expression tag' -3 43 2 3M92 GLN B 20 ? UNP P0AB64 ? ? 'expression tag' -2 44 2 3M92 GLY B 21 ? UNP P0AB64 ? ? 'expression tag' -1 45 2 3M92 HIS B 22 ? UNP P0AB64 ? ? 'expression tag' 0 46 2 3M92 GLY B 106 ? UNP P0AB64 ? ? 'expression tag' 84 47 2 3M92 SER B 107 ? UNP P0AB64 ? ? 'expression tag' 85 48 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3M92 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.5M K3PO4, 0.5M NaPO4, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 273 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-03-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97945 1.0 2 0.97929 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97945, 0.97929' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3M92 _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 50.000 _reflns.number_obs 15604 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_netI_over_sigmaI 9.500 _reflns.pdbx_chi_squared 1.541 _reflns.pdbx_redundancy 12.000 _reflns.percent_possible_obs 97.300 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.number_all 15604 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 46.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.09 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.655 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.476 _reflns_shell.pdbx_redundancy 12.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 791 _reflns_shell.percent_possible_all 99.50 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3M92 _refine.ls_d_res_high 2.050 _refine.ls_d_res_low 28.180 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.620 _refine.ls_number_reflns_obs 15541 _refine.ls_number_reflns_all 15541 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all 0.200 _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_R_work 0.198 _refine.ls_wR_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.241 _refine.ls_wR_factor_R_free 0.248 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 769 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.166 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.060 _refine.aniso_B[2][2] 0.060 _refine.aniso_B[3][3] -0.090 _refine.aniso_B[1][2] 0.030 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.overall_SU_R_Cruickshank_DPI 0.160 _refine.overall_SU_R_free 0.154 _refine.pdbx_overall_ESU_R 0.160 _refine.pdbx_overall_ESU_R_Free 0.154 _refine.overall_SU_ML 0.110 _refine.overall_SU_B 8.851 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.864 _refine.B_iso_max 63.14 _refine.B_iso_min 13.41 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1253 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 1346 _refine_hist.d_res_high 2.050 _refine_hist.d_res_low 28.180 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1311 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 856 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1783 1.394 1.955 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2110 0.923 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 169 5.379 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 62 42.358 24.839 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 230 16.185 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 13.157 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 211 0.094 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1462 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 256 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 812 0.879 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 331 0.210 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1313 1.704 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 499 2.862 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 465 4.645 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.050 _refine_ls_shell.d_res_low 2.103 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.300 _refine_ls_shell.number_reflns_R_work 1077 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.226 _refine_ls_shell.R_factor_R_free 0.272 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1138 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3M92 _struct.title 'The structure of yciN, an unchracterized protein from Shigella flexneri.' _struct.pdbx_descriptor 'Protein yciN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3M92 _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text 'DUF2498, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'unknown but likely dimer in asymmetric unit.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 31 ? ALA A 51 ? ASP A 9 ALA A 29 1 ? 21 HELX_P HELX_P2 2 THR A 80 ? SER A 98 ? THR A 58 SER A 76 1 ? 19 HELX_P HELX_P3 3 ASP B 31 ? ALA B 51 ? ASP B 9 ALA B 29 1 ? 21 HELX_P HELX_P4 4 THR B 80 ? LYS B 100 ? THR B 58 LYS B 78 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 88 C ? ? ? 1_555 A MSE 89 N ? ? A ASN 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A MSE 89 C ? ? ? 1_555 A PHE 90 N ? ? A MSE 67 A PHE 68 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? B ASN 88 C ? ? ? 1_555 B MSE 89 N ? ? B ASN 66 B MSE 67 1_555 ? ? ? ? ? ? ? 1.321 ? covale4 covale ? ? B MSE 89 C ? ? ? 1_555 B PHE 90 N ? ? B MSE 67 B PHE 68 1_555 ? ? ? ? ? ? ? 1.332 ? metalc1 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? B NA 86 B HOH 133 1_555 ? ? ? ? ? ? ? 2.222 ? metalc2 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? B NA 86 B HOH 130 1_555 ? ? ? ? ? ? ? 2.301 ? metalc3 metalc ? ? B SER 98 O ? ? ? 1_555 D NA . NA ? ? B SER 76 B NA 86 1_555 ? ? ? ? ? ? ? 2.372 ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? B NA 86 A HOH 98 1_555 ? ? ? ? ? ? ? 2.421 ? metalc5 metalc ? ? B TYR 101 O ? ? ? 1_555 D NA . NA ? ? B TYR 79 B NA 86 1_555 ? ? ? ? ? ? ? 2.487 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? anti-parallel C 1 2 ? parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 28 ? ILE A 30 ? GLN A 6 ILE A 8 A 2 TYR B 101 ? LEU B 103 ? TYR B 79 LEU B 81 B 1 ALA A 55 ? GLN A 60 ? ALA A 33 GLN A 38 B 2 LEU A 65 ? GLY A 69 ? LEU A 43 GLY A 47 C 1 TYR A 101 ? LEU A 103 ? TYR A 79 LEU A 81 C 2 GLN B 28 ? ILE B 30 ? GLN B 6 ILE B 8 D 1 ALA B 55 ? ARG B 61 ? ALA B 33 ARG B 39 D 2 VAL B 64 ? GLY B 69 ? VAL B 42 GLY B 47 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 28 ? N GLN A 6 O HIS B 102 ? O HIS B 80 B 1 2 N GLY A 57 ? N GLY A 35 O THR A 68 ? O THR A 46 C 1 2 N HIS A 102 ? N HIS A 80 O GLN B 28 ? O GLN B 6 D 1 2 N THR B 59 ? N THR B 37 O VAL B 66 ? O VAL B 44 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 86' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA B 86' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 102 ? HIS A 80 . ? 1_555 ? 2 AC1 4 GLN B 60 ? GLN B 38 . ? 3_665 ? 3 AC1 4 GLY B 63 ? GLY B 41 . ? 3_665 ? 4 AC1 4 HOH F . ? HOH B 135 . ? 3_665 ? 5 AC2 5 HOH E . ? HOH A 98 . ? 1_555 ? 6 AC2 5 SER B 98 ? SER B 76 . ? 1_555 ? 7 AC2 5 TYR B 101 ? TYR B 79 . ? 1_555 ? 8 AC2 5 HOH F . ? HOH B 130 . ? 1_555 ? 9 AC2 5 HOH F . ? HOH B 133 . ? 1_555 ? # _atom_sites.entry_id 3M92 _atom_sites.fract_transf_matrix[1][1] 0.017746 _atom_sites.fract_transf_matrix[1][2] 0.010246 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020491 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007561 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 SER 3 -19 ? ? ? A . n A 1 4 SER 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 SER 11 -11 ? ? ? A . n A 1 12 SER 12 -10 ? ? ? A . n A 1 13 GLY 13 -9 ? ? ? A . n A 1 14 ARG 14 -8 ? ? ? A . n A 1 15 GLU 15 -7 ? ? ? A . n A 1 16 ASN 16 -6 ? ? ? A . n A 1 17 LEU 17 -5 ? ? ? A . n A 1 18 TYR 18 -4 ? ? ? A . n A 1 19 PHE 19 -3 ? ? ? A . n A 1 20 GLN 20 -2 ? ? ? A . n A 1 21 GLY 21 -1 ? ? ? A . n A 1 22 HIS 22 0 ? ? ? A . n A 1 23 MSE 23 1 ? ? ? A . n A 1 24 ASN 24 2 ? ? ? A . n A 1 25 LYS 25 3 3 LYS LYS A . n A 1 26 GLU 26 4 4 GLU GLU A . n A 1 27 THR 27 5 5 THR THR A . n A 1 28 GLN 28 6 6 GLN GLN A . n A 1 29 PRO 29 7 7 PRO PRO A . n A 1 30 ILE 30 8 8 ILE ILE A . n A 1 31 ASP 31 9 9 ASP ASP A . n A 1 32 ARG 32 10 10 ARG ARG A . n A 1 33 GLU 33 11 11 GLU GLU A . n A 1 34 THR 34 12 12 THR THR A . n A 1 35 LEU 35 13 13 LEU LEU A . n A 1 36 LEU 36 14 14 LEU LEU A . n A 1 37 LYS 37 15 15 LYS LYS A . n A 1 38 GLU 38 16 16 GLU GLU A . n A 1 39 ALA 39 17 17 ALA ALA A . n A 1 40 ASN 40 18 18 ASN ASN A . n A 1 41 LYS 41 19 19 LYS LYS A . n A 1 42 ILE 42 20 20 ILE ILE A . n A 1 43 ILE 43 21 21 ILE ILE A . n A 1 44 ARG 44 22 22 ARG ARG A . n A 1 45 GLU 45 23 23 GLU GLU A . n A 1 46 HIS 46 24 24 HIS HIS A . n A 1 47 GLU 47 25 25 GLU GLU A . n A 1 48 ASP 48 26 26 ASP ASP A . n A 1 49 THR 49 27 27 THR THR A . n A 1 50 LEU 50 28 28 LEU LEU A . n A 1 51 ALA 51 29 29 ALA ALA A . n A 1 52 GLY 52 30 30 GLY GLY A . n A 1 53 ILE 53 31 31 ILE ILE A . n A 1 54 GLU 54 32 32 GLU GLU A . n A 1 55 ALA 55 33 33 ALA ALA A . n A 1 56 THR 56 34 34 THR THR A . n A 1 57 GLY 57 35 35 GLY GLY A . n A 1 58 VAL 58 36 36 VAL VAL A . n A 1 59 THR 59 37 37 THR THR A . n A 1 60 GLN 60 38 38 GLN GLN A . n A 1 61 ARG 61 39 39 ARG ARG A . n A 1 62 ASN 62 40 40 ASN ASN A . n A 1 63 GLY 63 41 41 GLY GLY A . n A 1 64 VAL 64 42 42 VAL VAL A . n A 1 65 LEU 65 43 43 LEU LEU A . n A 1 66 VAL 66 44 44 VAL VAL A . n A 1 67 PHE 67 45 45 PHE PHE A . n A 1 68 THR 68 46 46 THR THR A . n A 1 69 GLY 69 47 47 GLY GLY A . n A 1 70 ASP 70 48 48 ASP ASP A . n A 1 71 TYR 71 49 49 TYR TYR A . n A 1 72 PHE 72 50 50 PHE PHE A . n A 1 73 LEU 73 51 51 LEU LEU A . n A 1 74 ASP 74 52 52 ASP ASP A . n A 1 75 GLU 75 53 53 GLU GLU A . n A 1 76 GLN 76 54 54 GLN GLN A . n A 1 77 GLY 77 55 55 GLY GLY A . n A 1 78 LEU 78 56 56 LEU LEU A . n A 1 79 PRO 79 57 57 PRO PRO A . n A 1 80 THR 80 58 58 THR THR A . n A 1 81 ALA 81 59 59 ALA ALA A . n A 1 82 LYS 82 60 60 LYS LYS A . n A 1 83 SER 83 61 61 SER SER A . n A 1 84 THR 84 62 62 THR THR A . n A 1 85 ALA 85 63 63 ALA ALA A . n A 1 86 VAL 86 64 64 VAL VAL A . n A 1 87 PHE 87 65 65 PHE PHE A . n A 1 88 ASN 88 66 66 ASN ASN A . n A 1 89 MSE 89 67 67 MSE MSE A . n A 1 90 PHE 90 68 68 PHE PHE A . n A 1 91 LYS 91 69 69 LYS LYS A . n A 1 92 HIS 92 70 70 HIS HIS A . n A 1 93 LEU 93 71 71 LEU LEU A . n A 1 94 ALA 94 72 72 ALA ALA A . n A 1 95 HIS 95 73 73 HIS HIS A . n A 1 96 VAL 96 74 74 VAL VAL A . n A 1 97 LEU 97 75 75 LEU LEU A . n A 1 98 SER 98 76 76 SER SER A . n A 1 99 GLU 99 77 77 GLU GLU A . n A 1 100 LYS 100 78 78 LYS LYS A . n A 1 101 TYR 101 79 79 TYR TYR A . n A 1 102 HIS 102 80 80 HIS HIS A . n A 1 103 LEU 103 81 81 LEU LEU A . n A 1 104 VAL 104 82 82 VAL VAL A . n A 1 105 ASP 105 83 ? ? ? A . n A 1 106 GLY 106 84 ? ? ? A . n A 1 107 SER 107 85 ? ? ? A . n B 1 1 MSE 1 -21 ? ? ? B . n B 1 2 GLY 2 -20 ? ? ? B . n B 1 3 SER 3 -19 ? ? ? B . n B 1 4 SER 4 -18 ? ? ? B . n B 1 5 HIS 5 -17 ? ? ? B . n B 1 6 HIS 6 -16 ? ? ? B . n B 1 7 HIS 7 -15 ? ? ? B . n B 1 8 HIS 8 -14 ? ? ? B . n B 1 9 HIS 9 -13 ? ? ? B . n B 1 10 HIS 10 -12 ? ? ? B . n B 1 11 SER 11 -11 ? ? ? B . n B 1 12 SER 12 -10 ? ? ? B . n B 1 13 GLY 13 -9 ? ? ? B . n B 1 14 ARG 14 -8 ? ? ? B . n B 1 15 GLU 15 -7 ? ? ? B . n B 1 16 ASN 16 -6 ? ? ? B . n B 1 17 LEU 17 -5 ? ? ? B . n B 1 18 TYR 18 -4 ? ? ? B . n B 1 19 PHE 19 -3 ? ? ? B . n B 1 20 GLN 20 -2 ? ? ? B . n B 1 21 GLY 21 -1 ? ? ? B . n B 1 22 HIS 22 0 ? ? ? B . n B 1 23 MSE 23 1 ? ? ? B . n B 1 24 ASN 24 2 2 ASN ASN B . n B 1 25 LYS 25 3 3 LYS LYS B . n B 1 26 GLU 26 4 4 GLU GLU B . n B 1 27 THR 27 5 5 THR THR B . n B 1 28 GLN 28 6 6 GLN GLN B . n B 1 29 PRO 29 7 7 PRO PRO B . n B 1 30 ILE 30 8 8 ILE ILE B . n B 1 31 ASP 31 9 9 ASP ASP B . n B 1 32 ARG 32 10 10 ARG ARG B . n B 1 33 GLU 33 11 11 GLU GLU B . n B 1 34 THR 34 12 12 THR THR B . n B 1 35 LEU 35 13 13 LEU LEU B . n B 1 36 LEU 36 14 14 LEU LEU B . n B 1 37 LYS 37 15 15 LYS LYS B . n B 1 38 GLU 38 16 16 GLU GLU B . n B 1 39 ALA 39 17 17 ALA ALA B . n B 1 40 ASN 40 18 18 ASN ASN B . n B 1 41 LYS 41 19 19 LYS LYS B . n B 1 42 ILE 42 20 20 ILE ILE B . n B 1 43 ILE 43 21 21 ILE ILE B . n B 1 44 ARG 44 22 22 ARG ARG B . n B 1 45 GLU 45 23 23 GLU GLU B . n B 1 46 HIS 46 24 24 HIS HIS B . n B 1 47 GLU 47 25 25 GLU GLU B . n B 1 48 ASP 48 26 26 ASP ASP B . n B 1 49 THR 49 27 27 THR THR B . n B 1 50 LEU 50 28 28 LEU LEU B . n B 1 51 ALA 51 29 29 ALA ALA B . n B 1 52 GLY 52 30 30 GLY GLY B . n B 1 53 ILE 53 31 31 ILE ILE B . n B 1 54 GLU 54 32 32 GLU GLU B . n B 1 55 ALA 55 33 33 ALA ALA B . n B 1 56 THR 56 34 34 THR THR B . n B 1 57 GLY 57 35 35 GLY GLY B . n B 1 58 VAL 58 36 36 VAL VAL B . n B 1 59 THR 59 37 37 THR THR B . n B 1 60 GLN 60 38 38 GLN GLN B . n B 1 61 ARG 61 39 39 ARG ARG B . n B 1 62 ASN 62 40 40 ASN ASN B . n B 1 63 GLY 63 41 41 GLY GLY B . n B 1 64 VAL 64 42 42 VAL VAL B . n B 1 65 LEU 65 43 43 LEU LEU B . n B 1 66 VAL 66 44 44 VAL VAL B . n B 1 67 PHE 67 45 45 PHE PHE B . n B 1 68 THR 68 46 46 THR THR B . n B 1 69 GLY 69 47 47 GLY GLY B . n B 1 70 ASP 70 48 48 ASP ASP B . n B 1 71 TYR 71 49 49 TYR TYR B . n B 1 72 PHE 72 50 50 PHE PHE B . n B 1 73 LEU 73 51 51 LEU LEU B . n B 1 74 ASP 74 52 52 ASP ASP B . n B 1 75 GLU 75 53 53 GLU GLU B . n B 1 76 GLN 76 54 54 GLN GLN B . n B 1 77 GLY 77 55 55 GLY GLY B . n B 1 78 LEU 78 56 56 LEU LEU B . n B 1 79 PRO 79 57 57 PRO PRO B . n B 1 80 THR 80 58 58 THR THR B . n B 1 81 ALA 81 59 59 ALA ALA B . n B 1 82 LYS 82 60 60 LYS LYS B . n B 1 83 SER 83 61 61 SER SER B . n B 1 84 THR 84 62 62 THR THR B . n B 1 85 ALA 85 63 63 ALA ALA B . n B 1 86 VAL 86 64 64 VAL VAL B . n B 1 87 PHE 87 65 65 PHE PHE B . n B 1 88 ASN 88 66 66 ASN ASN B . n B 1 89 MSE 89 67 67 MSE MSE B . n B 1 90 PHE 90 68 68 PHE PHE B . n B 1 91 LYS 91 69 69 LYS LYS B . n B 1 92 HIS 92 70 70 HIS HIS B . n B 1 93 LEU 93 71 71 LEU LEU B . n B 1 94 ALA 94 72 72 ALA ALA B . n B 1 95 HIS 95 73 73 HIS HIS B . n B 1 96 VAL 96 74 74 VAL VAL B . n B 1 97 LEU 97 75 75 LEU LEU B . n B 1 98 SER 98 76 76 SER SER B . n B 1 99 GLU 99 77 77 GLU GLU B . n B 1 100 LYS 100 78 78 LYS LYS B . n B 1 101 TYR 101 79 79 TYR TYR B . n B 1 102 HIS 102 80 80 HIS HIS B . n B 1 103 LEU 103 81 81 LEU LEU B . n B 1 104 VAL 104 82 82 VAL VAL B . n B 1 105 ASP 105 83 ? ? ? B . n B 1 106 GLY 106 84 ? ? ? B . n B 1 107 SER 107 85 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 86 1 CL CL A . D 3 NA 1 86 1 NA NA B . E 4 HOH 1 87 3 HOH HOH A . E 4 HOH 2 88 5 HOH HOH A . E 4 HOH 3 89 89 HOH HOH A . E 4 HOH 4 90 90 HOH HOH A . E 4 HOH 5 91 91 HOH HOH A . E 4 HOH 6 92 9 HOH HOH A . E 4 HOH 7 93 10 HOH HOH A . E 4 HOH 8 94 13 HOH HOH A . E 4 HOH 9 95 15 HOH HOH A . E 4 HOH 10 96 19 HOH HOH A . E 4 HOH 11 97 22 HOH HOH A . E 4 HOH 12 98 23 HOH HOH A . E 4 HOH 13 99 25 HOH HOH A . E 4 HOH 14 100 26 HOH HOH A . E 4 HOH 15 101 28 HOH HOH A . E 4 HOH 16 102 30 HOH HOH A . E 4 HOH 17 103 31 HOH HOH A . E 4 HOH 18 104 32 HOH HOH A . E 4 HOH 19 105 34 HOH HOH A . E 4 HOH 20 106 39 HOH HOH A . E 4 HOH 21 107 44 HOH HOH A . E 4 HOH 22 108 46 HOH HOH A . E 4 HOH 23 109 50 HOH HOH A . E 4 HOH 24 110 52 HOH HOH A . E 4 HOH 25 111 54 HOH HOH A . E 4 HOH 26 112 57 HOH HOH A . E 4 HOH 27 113 58 HOH HOH A . E 4 HOH 28 114 60 HOH HOH A . E 4 HOH 29 115 62 HOH HOH A . E 4 HOH 30 116 66 HOH HOH A . E 4 HOH 31 117 69 HOH HOH A . E 4 HOH 32 118 70 HOH HOH A . E 4 HOH 33 119 71 HOH HOH A . E 4 HOH 34 120 72 HOH HOH A . E 4 HOH 35 121 78 HOH HOH A . E 4 HOH 36 122 79 HOH HOH A . E 4 HOH 37 123 83 HOH HOH A . E 4 HOH 38 124 85 HOH HOH A . E 4 HOH 39 125 1 HOH HOH A . F 4 HOH 1 87 87 HOH HOH B . F 4 HOH 2 88 88 HOH HOH B . F 4 HOH 3 89 4 HOH HOH B . F 4 HOH 4 90 6 HOH HOH B . F 4 HOH 5 91 7 HOH HOH B . F 4 HOH 6 92 8 HOH HOH B . F 4 HOH 7 93 11 HOH HOH B . F 4 HOH 8 94 12 HOH HOH B . F 4 HOH 9 95 14 HOH HOH B . F 4 HOH 10 96 16 HOH HOH B . F 4 HOH 11 97 17 HOH HOH B . F 4 HOH 12 98 18 HOH HOH B . F 4 HOH 13 99 20 HOH HOH B . F 4 HOH 14 100 21 HOH HOH B . F 4 HOH 15 101 24 HOH HOH B . F 4 HOH 16 102 27 HOH HOH B . F 4 HOH 17 103 29 HOH HOH B . F 4 HOH 18 104 33 HOH HOH B . F 4 HOH 19 105 35 HOH HOH B . F 4 HOH 20 106 36 HOH HOH B . F 4 HOH 21 107 37 HOH HOH B . F 4 HOH 22 108 38 HOH HOH B . F 4 HOH 23 109 40 HOH HOH B . F 4 HOH 24 110 41 HOH HOH B . F 4 HOH 25 111 42 HOH HOH B . F 4 HOH 26 112 43 HOH HOH B . F 4 HOH 27 113 45 HOH HOH B . F 4 HOH 28 114 47 HOH HOH B . F 4 HOH 29 115 48 HOH HOH B . F 4 HOH 30 116 49 HOH HOH B . F 4 HOH 31 117 51 HOH HOH B . F 4 HOH 32 118 53 HOH HOH B . F 4 HOH 33 119 55 HOH HOH B . F 4 HOH 34 120 56 HOH HOH B . F 4 HOH 35 121 59 HOH HOH B . F 4 HOH 36 122 61 HOH HOH B . F 4 HOH 37 123 63 HOH HOH B . F 4 HOH 38 124 64 HOH HOH B . F 4 HOH 39 125 65 HOH HOH B . F 4 HOH 40 126 67 HOH HOH B . F 4 HOH 41 127 68 HOH HOH B . F 4 HOH 42 128 73 HOH HOH B . F 4 HOH 43 129 74 HOH HOH B . F 4 HOH 44 130 75 HOH HOH B . F 4 HOH 45 131 76 HOH HOH B . F 4 HOH 46 132 77 HOH HOH B . F 4 HOH 47 133 80 HOH HOH B . F 4 HOH 48 134 81 HOH HOH B . F 4 HOH 49 135 82 HOH HOH B . F 4 HOH 50 136 84 HOH HOH B . F 4 HOH 51 137 2 HOH HOH B . F 4 HOH 52 138 86 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 89 A MSE 67 ? MET SELENOMETHIONINE 2 B MSE 89 B MSE 67 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4070 ? 1 MORE -42 ? 1 'SSA (A^2)' 9540 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? B HOH 133 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? F HOH . ? B HOH 130 ? 1_555 87.0 ? 2 O ? F HOH . ? B HOH 133 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? B SER 98 ? B SER 76 ? 1_555 86.8 ? 3 O ? F HOH . ? B HOH 130 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? B SER 98 ? B SER 76 ? 1_555 121.1 ? 4 O ? F HOH . ? B HOH 133 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? E HOH . ? A HOH 98 ? 1_555 93.1 ? 5 O ? F HOH . ? B HOH 130 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? E HOH . ? A HOH 98 ? 1_555 122.3 ? 6 O ? B SER 98 ? B SER 76 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? E HOH . ? A HOH 98 ? 1_555 116.5 ? 7 O ? F HOH . ? B HOH 133 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? B TYR 101 ? B TYR 79 ? 1_555 170.7 ? 8 O ? F HOH . ? B HOH 130 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? B TYR 101 ? B TYR 79 ? 1_555 92.6 ? 9 O ? B SER 98 ? B SER 76 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? B TYR 101 ? B TYR 79 ? 1_555 85.5 ? 10 O ? E HOH . ? A HOH 98 ? 1_555 NA ? D NA . ? B NA 86 ? 1_555 O ? B TYR 101 ? B TYR 79 ? 1_555 94.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.050 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 15604 _diffrn_reflns.pdbx_Rmerge_I_obs 0.072 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.54 _diffrn_reflns.av_sigmaI_over_netI 50.44 _diffrn_reflns.pdbx_redundancy 12.00 _diffrn_reflns.pdbx_percent_possible_obs 97.30 _diffrn_reflns.number 187426 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.56 50.00 ? ? 0.068 ? 6.917 10.20 87.40 1 4.42 5.56 ? ? 0.057 ? 3.987 11.40 94.00 1 3.86 4.42 ? ? 0.060 ? 3.611 11.80 94.80 1 3.51 3.86 ? ? 0.066 ? 3.197 11.90 96.10 1 3.25 3.51 ? ? 0.065 ? 2.508 12.00 97.10 1 3.06 3.25 ? ? 0.069 ? 1.852 12.20 97.20 1 2.91 3.06 ? ? 0.072 ? 1.339 12.10 97.80 1 2.78 2.91 ? ? 0.083 ? 1.114 12.20 97.90 1 2.68 2.78 ? ? 0.094 ? 0.885 12.10 98.10 1 2.58 2.68 ? ? 0.115 ? 0.812 12.30 98.20 1 2.50 2.58 ? ? 0.134 ? 0.726 12.20 99.00 1 2.43 2.50 ? ? 0.162 ? 0.656 12.20 98.40 1 2.37 2.43 ? ? 0.189 ? 0.602 12.20 99.00 1 2.31 2.37 ? ? 0.206 ? 0.592 12.20 98.50 1 2.26 2.31 ? ? 0.240 ? 0.563 12.30 99.10 1 2.21 2.26 ? ? 0.331 ? 0.554 12.20 99.30 1 2.16 2.21 ? ? 0.376 ? 0.554 12.00 98.90 1 2.12 2.16 ? ? 0.483 ? 0.497 12.40 99.20 1 2.09 2.12 ? ? 0.643 ? 0.487 12.10 99.40 1 2.05 2.09 ? ? 0.655 ? 0.476 12.30 99.50 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 40.0982 14.7199 1.8222 0.1720 0.0719 0.1409 -0.1031 -0.0491 0.0435 2.2215 2.1921 2.1884 0.6935 -0.3794 -0.4361 0.0832 -0.1379 0.0547 -0.0773 0.0453 -0.1670 0.1897 -0.1254 0.1904 'X-RAY DIFFRACTION' 2 ? refined 34.8391 5.5072 1.7302 0.1448 0.0573 0.1628 -0.0874 -0.0375 0.0398 2.4245 2.3921 2.7320 0.4812 -0.0680 -1.2259 -0.0263 -0.0569 0.0832 -0.0573 -0.1004 -0.1294 0.0564 0.0552 0.0219 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 3 A 82 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 86 A 86 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 87 A 125 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 B 2 B 82 ? . . . . ? 'X-RAY DIFFRACTION' 5 2 B 86 B 86 ? . . . . ? 'X-RAY DIFFRACTION' 6 2 B 87 B 138 ? . . . . ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 2.05 48.80 13472 0.000 0.000 1.630 2064 0.000 0.000 1.000 2 2.05 48.80 12543 9.000 0.390 0.980 1976 13.400 0.330 0.950 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 12.67 48.80 32 0.300 0.000 1.490 29 0.100 0.000 1.000 1 7.28 12.67 196 0.200 0.000 1.030 88 0.200 0.000 1.000 1 5.11 7.28 509 0.200 0.000 1.550 163 0.100 0.000 1.000 1 3.93 5.11 1001 0.100 0.000 1.170 208 0.100 0.000 1.000 1 3.20 3.93 1614 0.100 0.000 1.260 288 0.000 0.000 1.000 1 2.70 3.20 2386 0.000 0.000 2.350 354 0.000 0.000 1.000 1 2.33 2.70 3321 0.000 0.000 10.560 419 0.000 0.000 1.000 1 2.05 2.33 4413 0.000 0.000 3.130 515 0.000 0.000 1.000 2 12.67 48.80 32 22.300 0.960 1.070 29 22.500 0.950 1.000 2 7.28 12.67 196 25.100 0.680 0.970 88 28.800 0.520 0.920 2 5.11 7.28 509 15.000 0.920 0.930 163 17.900 0.690 0.910 2 3.93 5.11 1001 19.000 0.470 0.960 208 22.200 0.360 0.930 2 3.20 3.93 1614 16.500 0.330 0.990 288 20.700 0.230 0.960 2 2.70 3.20 2386 9.400 0.320 0.980 354 13.100 0.190 0.970 2 2.33 2.70 3320 5.400 0.290 0.980 419 6.900 0.180 0.980 2 2.05 2.33 3485 3.800 0.210 0.990 427 5.200 0.120 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se -0.195 -0.860 -0.009 63.4469 0.000 4.779 2 Se -0.205 -0.798 0.046 66.7653 0.000 4.894 3 Se -0.322 -0.707 -0.138 68.4683 0.000 1.114 4 Se -0.194 -0.858 -0.009 56.8645 -0.210 2.609 5 Se -0.204 -0.797 0.046 62.1972 -0.237 2.669 6 Se -0.327 -0.711 -0.137 61.387 -0.038 0.505 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 12.67 48.80 61 0.517 29 0.396 32 0.626 7.28 12.67 284 0.486 88 0.290 196 0.574 5.11 7.28 672 0.614 163 0.412 509 0.679 3.93 5.11 1209 0.520 208 0.254 1001 0.575 3.20 3.93 1902 0.460 288 0.197 1614 0.507 2.70 3.20 2740 0.410 354 0.185 2386 0.444 2.33 2.70 3740 0.258 419 0.132 3321 0.273 2.05 2.33 4928 0.102 515 0.054 4413 0.108 # _pdbx_phasing_dm.entry_id 3M92 _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 15536 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 6.450 100.000 57.000 ? ? ? 0.769 ? ? 502 5.120 6.450 54.600 ? ? ? 0.890 ? ? 503 4.480 5.120 55.100 ? ? ? 0.917 ? ? 506 4.070 4.480 58.600 ? ? ? 0.904 ? ? 504 3.770 4.070 61.900 ? ? ? 0.916 ? ? 506 3.550 3.770 63.200 ? ? ? 0.905 ? ? 503 3.370 3.550 59.200 ? ? ? 0.907 ? ? 508 3.220 3.370 60.800 ? ? ? 0.893 ? ? 511 3.090 3.220 61.800 ? ? ? 0.892 ? ? 516 2.980 3.090 59.300 ? ? ? 0.891 ? ? 536 2.880 2.980 58.600 ? ? ? 0.882 ? ? 548 2.790 2.880 60.600 ? ? ? 0.865 ? ? 568 2.700 2.790 62.500 ? ? ? 0.882 ? ? 597 2.630 2.700 65.300 ? ? ? 0.866 ? ? 631 2.560 2.630 66.200 ? ? ? 0.869 ? ? 603 2.490 2.560 67.900 ? ? ? 0.870 ? ? 659 2.430 2.490 70.400 ? ? ? 0.856 ? ? 642 2.370 2.430 71.500 ? ? ? 0.878 ? ? 687 2.320 2.370 69.300 ? ? ? 0.886 ? ? 682 2.270 2.320 74.400 ? ? ? 0.886 ? ? 717 2.230 2.270 74.900 ? ? ? 0.881 ? ? 714 2.180 2.230 77.000 ? ? ? 0.894 ? ? 741 2.140 2.180 81.400 ? ? ? 0.894 ? ? 750 2.100 2.140 82.200 ? ? ? 0.877 ? ? 753 2.050 2.100 86.600 ? ? ? 0.838 ? ? 1149 # _phasing.method MAD # _phasing_MAD.entry_id 3M92 _phasing_MAD.pdbx_d_res_high 2.05 _phasing_MAD.pdbx_d_res_low 48.80 _phasing_MAD.pdbx_reflns 15536 _phasing_MAD.pdbx_fom 0.301 _phasing_MAD.pdbx_reflns_centric 2064 _phasing_MAD.pdbx_fom_centric 0.176 _phasing_MAD.pdbx_reflns_acentric 13472 _phasing_MAD.pdbx_fom_acentric 0.320 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MLPHARE . ? other 'Eleanor J. Dodson' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/mlphare.html Fortran_77 ? 4 DM 6.0 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 5 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 8 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 10 HKL-3000 . ? ? ? ? phasing ? ? ? 11 SHELXD . ? ? ? ? phasing ? ? ? 12 SHELXE . ? ? ? ? 'model building' ? ? ? 13 SOLVE . ? ? ? ? phasing ? ? ? 14 RESOLVE . ? ? ? ? phasing ? ? ? 15 ARP/wARP . ? ? ? ? 'model building' ? ? ? 16 CCP4 . ? ? ? ? phasing ? ? ? 17 O . ? ? ? ? 'model building' ? ? ? 18 Coot . ? ? ? ? 'model building' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 40 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -159.61 _pdbx_validate_torsion.psi 56.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 11 ? CG ? A GLU 33 CG 2 1 Y 1 A GLU 11 ? CD ? A GLU 33 CD 3 1 Y 1 A GLU 11 ? OE1 ? A GLU 33 OE1 4 1 Y 1 A GLU 11 ? OE2 ? A GLU 33 OE2 5 1 Y 1 A LYS 15 ? CG ? A LYS 37 CG 6 1 Y 1 A LYS 15 ? CD ? A LYS 37 CD 7 1 Y 1 A LYS 15 ? CE ? A LYS 37 CE 8 1 Y 1 A LYS 15 ? NZ ? A LYS 37 NZ 9 1 Y 1 A LYS 19 ? CG ? A LYS 41 CG 10 1 Y 1 A LYS 19 ? CD ? A LYS 41 CD 11 1 Y 1 A LYS 19 ? CE ? A LYS 41 CE 12 1 Y 1 A LYS 19 ? NZ ? A LYS 41 NZ 13 1 Y 1 A ARG 39 ? CG ? A ARG 61 CG 14 1 Y 1 A ARG 39 ? CD ? A ARG 61 CD 15 1 Y 1 A ARG 39 ? NE ? A ARG 61 NE 16 1 Y 1 A ARG 39 ? CZ ? A ARG 61 CZ 17 1 Y 1 A ARG 39 ? NH1 ? A ARG 61 NH1 18 1 Y 1 A ARG 39 ? NH2 ? A ARG 61 NH2 19 1 Y 1 A ASN 40 ? CG ? A ASN 62 CG 20 1 Y 1 A ASN 40 ? OD1 ? A ASN 62 OD1 21 1 Y 1 A ASN 40 ? ND2 ? A ASN 62 ND2 22 1 Y 1 B ARG 39 ? CG ? B ARG 61 CG 23 1 Y 1 B ARG 39 ? CD ? B ARG 61 CD 24 1 Y 1 B ARG 39 ? NE ? B ARG 61 NE 25 1 Y 1 B ARG 39 ? CZ ? B ARG 61 CZ 26 1 Y 1 B ARG 39 ? NH1 ? B ARG 61 NH1 27 1 Y 1 B ARG 39 ? NH2 ? B ARG 61 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -21 ? A MSE 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A SER -19 ? A SER 3 4 1 Y 1 A SER -18 ? A SER 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A SER -11 ? A SER 11 12 1 Y 1 A SER -10 ? A SER 12 13 1 Y 1 A GLY -9 ? A GLY 13 14 1 Y 1 A ARG -8 ? A ARG 14 15 1 Y 1 A GLU -7 ? A GLU 15 16 1 Y 1 A ASN -6 ? A ASN 16 17 1 Y 1 A LEU -5 ? A LEU 17 18 1 Y 1 A TYR -4 ? A TYR 18 19 1 Y 1 A PHE -3 ? A PHE 19 20 1 Y 1 A GLN -2 ? A GLN 20 21 1 Y 1 A GLY -1 ? A GLY 21 22 1 Y 1 A HIS 0 ? A HIS 22 23 1 Y 1 A MSE 1 ? A MSE 23 24 1 Y 1 A ASN 2 ? A ASN 24 25 1 Y 1 A ASP 83 ? A ASP 105 26 1 Y 1 A GLY 84 ? A GLY 106 27 1 Y 1 A SER 85 ? A SER 107 28 1 Y 1 B MSE -21 ? B MSE 1 29 1 Y 1 B GLY -20 ? B GLY 2 30 1 Y 1 B SER -19 ? B SER 3 31 1 Y 1 B SER -18 ? B SER 4 32 1 Y 1 B HIS -17 ? B HIS 5 33 1 Y 1 B HIS -16 ? B HIS 6 34 1 Y 1 B HIS -15 ? B HIS 7 35 1 Y 1 B HIS -14 ? B HIS 8 36 1 Y 1 B HIS -13 ? B HIS 9 37 1 Y 1 B HIS -12 ? B HIS 10 38 1 Y 1 B SER -11 ? B SER 11 39 1 Y 1 B SER -10 ? B SER 12 40 1 Y 1 B GLY -9 ? B GLY 13 41 1 Y 1 B ARG -8 ? B ARG 14 42 1 Y 1 B GLU -7 ? B GLU 15 43 1 Y 1 B ASN -6 ? B ASN 16 44 1 Y 1 B LEU -5 ? B LEU 17 45 1 Y 1 B TYR -4 ? B TYR 18 46 1 Y 1 B PHE -3 ? B PHE 19 47 1 Y 1 B GLN -2 ? B GLN 20 48 1 Y 1 B GLY -1 ? B GLY 21 49 1 Y 1 B HIS 0 ? B HIS 22 50 1 Y 1 B MSE 1 ? B MSE 23 51 1 Y 1 B ASP 83 ? B ASP 105 52 1 Y 1 B GLY 84 ? B GLY 106 53 1 Y 1 B SER 85 ? B SER 107 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SODIUM ION' NA 4 water HOH #