HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-MAR-10 3M92 TITLE THE STRUCTURE OF YCIN, AN UNCHRACTERIZED PROTEIN FROM SHIGELLA TITLE 2 FLEXNERI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YCIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A; SOURCE 3 ORGANISM_TAXID: 198215; SOURCE 4 STRAIN: 2457T; SOURCE 5 GENE: S1360, SF1275, YCIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MODIFIED BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DUF2498, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,X.XU,H.CUI,S.CHIN,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 08-NOV-17 3M92 1 REMARK REVDAT 2 13-JUL-11 3M92 1 VERSN REVDAT 1 19-MAY-10 3M92 0 JRNL AUTH M.E.CUFF,X.XU,H.CUI,S.CHIN,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE STRUCTURE OF YCIN, AN UNCHRACTERIZED PROTEIN FROM JRNL TITL 2 SHIGELLA FLEXNERI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 15541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1077 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 46.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1311 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 856 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1783 ; 1.394 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2110 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 169 ; 5.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;42.358 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 230 ;16.185 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.157 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 211 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1462 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 256 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 812 ; 0.879 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 331 ; 0.210 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 1.704 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 499 ; 2.862 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 465 ; 4.645 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 82 REMARK 3 RESIDUE RANGE : A 86 A 86 REMARK 3 RESIDUE RANGE : A 87 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0982 14.7199 1.8222 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.0719 REMARK 3 T33: 0.1409 T12: -0.1031 REMARK 3 T13: -0.0491 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 2.2215 L22: 2.1921 REMARK 3 L33: 2.1884 L12: 0.6935 REMARK 3 L13: -0.3794 L23: -0.4361 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: -0.0773 S13: 0.0453 REMARK 3 S21: 0.1897 S22: -0.1379 S23: -0.1670 REMARK 3 S31: -0.1254 S32: 0.1904 S33: 0.0547 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 82 REMARK 3 RESIDUE RANGE : B 86 B 86 REMARK 3 RESIDUE RANGE : B 87 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8391 5.5072 1.7302 REMARK 3 T TENSOR REMARK 3 T11: 0.1448 T22: 0.0573 REMARK 3 T33: 0.1628 T12: -0.0874 REMARK 3 T13: -0.0375 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 2.4245 L22: 2.3921 REMARK 3 L33: 2.7320 L12: 0.4812 REMARK 3 L13: -0.0680 L23: -1.2259 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.0573 S13: -0.1004 REMARK 3 S21: 0.0564 S22: -0.0569 S23: -0.1294 REMARK 3 S31: 0.0552 S32: 0.0219 S33: 0.0832 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3M92 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945, 0.97929 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M K3PO4, 0.5M NAPO4, PH 6.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.17333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.08667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.08667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.17333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: UNKNOWN BUT LIKELY DIMER IN ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 83 REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 MSE B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 ARG B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 83 REMARK 465 GLY B 84 REMARK 465 SER B 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 56.16 -159.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 86 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 133 O REMARK 620 2 HOH B 130 O 87.0 REMARK 620 3 SER B 76 O 86.8 121.1 REMARK 620 4 HOH A 98 O 93.1 122.3 116.5 REMARK 620 5 TYR B 79 O 170.7 92.6 85.5 94.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 86 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 86 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC27530 RELATED DB: TARGETDB DBREF 3M92 A 1 83 UNP P0AB64 YCIN_SHIFL 1 83 DBREF 3M92 B 1 83 UNP P0AB64 YCIN_SHIFL 1 83 SEQADV 3M92 MSE A -21 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLY A -20 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER A -19 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER A -18 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS A -17 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS A -16 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS A -15 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS A -14 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS A -13 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS A -12 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER A -11 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER A -10 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLY A -9 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 ARG A -8 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLU A -7 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 ASN A -6 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 LEU A -5 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 TYR A -4 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 PHE A -3 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLN A -2 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLY A -1 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS A 0 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLY A 84 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER A 85 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 MSE B -21 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLY B -20 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER B -19 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER B -18 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS B -17 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS B -16 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS B -15 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS B -14 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS B -13 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS B -12 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER B -11 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER B -10 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLY B -9 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 ARG B -8 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLU B -7 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 ASN B -6 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 LEU B -5 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 TYR B -4 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 PHE B -3 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLN B -2 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLY B -1 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 HIS B 0 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 GLY B 84 UNP P0AB64 EXPRESSION TAG SEQADV 3M92 SER B 85 UNP P0AB64 EXPRESSION TAG SEQRES 1 A 107 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 107 ARG GLU ASN LEU TYR PHE GLN GLY HIS MSE ASN LYS GLU SEQRES 3 A 107 THR GLN PRO ILE ASP ARG GLU THR LEU LEU LYS GLU ALA SEQRES 4 A 107 ASN LYS ILE ILE ARG GLU HIS GLU ASP THR LEU ALA GLY SEQRES 5 A 107 ILE GLU ALA THR GLY VAL THR GLN ARG ASN GLY VAL LEU SEQRES 6 A 107 VAL PHE THR GLY ASP TYR PHE LEU ASP GLU GLN GLY LEU SEQRES 7 A 107 PRO THR ALA LYS SER THR ALA VAL PHE ASN MSE PHE LYS SEQRES 8 A 107 HIS LEU ALA HIS VAL LEU SER GLU LYS TYR HIS LEU VAL SEQRES 9 A 107 ASP GLY SER SEQRES 1 B 107 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 107 ARG GLU ASN LEU TYR PHE GLN GLY HIS MSE ASN LYS GLU SEQRES 3 B 107 THR GLN PRO ILE ASP ARG GLU THR LEU LEU LYS GLU ALA SEQRES 4 B 107 ASN LYS ILE ILE ARG GLU HIS GLU ASP THR LEU ALA GLY SEQRES 5 B 107 ILE GLU ALA THR GLY VAL THR GLN ARG ASN GLY VAL LEU SEQRES 6 B 107 VAL PHE THR GLY ASP TYR PHE LEU ASP GLU GLN GLY LEU SEQRES 7 B 107 PRO THR ALA LYS SER THR ALA VAL PHE ASN MSE PHE LYS SEQRES 8 B 107 HIS LEU ALA HIS VAL LEU SER GLU LYS TYR HIS LEU VAL SEQRES 9 B 107 ASP GLY SER MODRES 3M92 MSE A 67 MET SELENOMETHIONINE MODRES 3M92 MSE B 67 MET SELENOMETHIONINE HET MSE A 67 13 HET MSE B 67 8 HET CL A 86 1 HET NA B 86 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 NA NA 1+ FORMUL 5 HOH *91(H2 O) HELIX 1 1 ASP A 9 ALA A 29 1 21 HELIX 2 2 THR A 58 SER A 76 1 19 HELIX 3 3 ASP B 9 ALA B 29 1 21 HELIX 4 4 THR B 58 LYS B 78 1 21 SHEET 1 A 2 GLN A 6 ILE A 8 0 SHEET 2 A 2 TYR B 79 LEU B 81 1 O HIS B 80 N GLN A 6 SHEET 1 B 2 ALA A 33 GLN A 38 0 SHEET 2 B 2 LEU A 43 GLY A 47 -1 O THR A 46 N GLY A 35 SHEET 1 C 2 TYR A 79 LEU A 81 0 SHEET 2 C 2 GLN B 6 ILE B 8 1 O GLN B 6 N HIS A 80 SHEET 1 D 2 ALA B 33 ARG B 39 0 SHEET 2 D 2 VAL B 42 GLY B 47 -1 O VAL B 44 N THR B 37 LINK C ASN A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N PHE A 68 1555 1555 1.33 LINK C ASN B 66 N MSE B 67 1555 1555 1.32 LINK C MSE B 67 N PHE B 68 1555 1555 1.33 LINK NA NA B 86 O HOH B 133 1555 1555 2.22 LINK NA NA B 86 O HOH B 130 1555 1555 2.30 LINK O SER B 76 NA NA B 86 1555 1555 2.37 LINK NA NA B 86 O HOH A 98 1555 1555 2.42 LINK O TYR B 79 NA NA B 86 1555 1555 2.49 SITE 1 AC1 4 HIS A 80 GLN B 38 GLY B 41 HOH B 135 SITE 1 AC2 5 HOH A 98 SER B 76 TYR B 79 HOH B 130 SITE 2 AC2 5 HOH B 133 CRYST1 56.350 56.350 132.260 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017746 0.010246 0.000000 0.00000 SCALE2 0.000000 0.020491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007561 0.00000